View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13824_high_12 (Length: 278)
Name: NF13824_high_12
Description: NF13824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13824_high_12 |
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| [»] chr2 (3 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 2 - 278
Target Start/End: Complemental strand, 41447729 - 41447453
Alignment:
| Q |
2 |
atcaaattagcatcaaaattaacaaggtaaagaaattaaggaacttttttattattgaaacttagaaaccagagttacataaattcatctcatatctgtg |
101 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
41447729 |
atcaaactagcatcaaaattaacaaggtaaagaaattaaggaacttttttattattgaaacttagaaaccagagttacatagattcatctcatatctatg |
41447630 |
T |
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| Q |
102 |
taccaaaaacatacacagaagcaaaagaatgccattaacaaatcaaaggagttaaacaactcaaagaaaaaggaaaccaaacataaatcaattttaccaa |
201 |
Q |
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| T |
41447629 |
taccaaaaacatacacagaagcaaaagaatgccattaacaaatcaaaggagttaaacaactcgaagaggaaggaaaccaaacaaaaatcaattttaccaa |
41447530 |
T |
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| Q |
202 |
aagtatattctccatgcagtctttttaaaaacacagaaggtaaatgaggaatgctcaaacaacttggagaaaataaa |
278 |
Q |
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| T |
41447529 |
aagtatattctcgatgcagtctttttaaaaacacagaaggtaaatgaggaatgatcaaacaacttggagaaaataaa |
41447453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 120 - 278
Target Start/End: Complemental strand, 41457797 - 41457639
Alignment:
| Q |
120 |
aagcaaaagaatgccattaacaaatcaaaggagttaaacaactcaaagaaaaaggaaaccaaacataaatcaattttaccaaaagtatattctccatgca |
219 |
Q |
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| T |
41457797 |
aagcaaaagaatgtcattaacaaatcaaaggagttaaacaactcgaagaggaaggaaaccaaacataaatcaattttaccaaaagtatattctccatgca |
41457698 |
T |
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| Q |
220 |
gtctttttaaaaacacagaaggtaaatgaggaatgctcaaacaacttggagaaaataaa |
278 |
Q |
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| T |
41457697 |
gtctttttaaaaacacagaaggtaaaggaggaatgatcaaacaacttggagaaaataaa |
41457639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 41457947 - 41457815
Alignment:
| Q |
4 |
caaattagcatcaaaattaacaaggtaaagaaattaaggaacttttttattattgaaacttagaaaccagagttacataaattcatctcatatctgtgta |
103 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||||||| || ||||||||||||||||||||| ||||||| |||||||||||| |||||| |
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| T |
41457947 |
caaattagcatcaaacttaacaaggtaaaggaattaaggaacttttgaat-attgaaacttagaaaccagagctacataagttcatctcatatttgtgta |
41457849 |
T |
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| Q |
104 |
ccaaaaacatacacagaagcaaaagaatgccatt |
137 |
Q |
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| T |
41457848 |
ccataaacataaacagaagcaaaagaatgtcatt |
41457815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 120 - 278
Target Start/End: Original strand, 16418858 - 16419013
Alignment:
| Q |
120 |
aagcaaaagaatgccattaacaaatcaaaggagttaaacaactcaaagaaaaaggaaaccaaacataaatcaattttaccaaaagtatattctccatgca |
219 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16418858 |
aagcaaaagaacatcattaacaaatcaaaggagttaaacaactcgaagaggaaggaaaccaaacataaatcaattttaccaaaagtatattctccatgca |
16418957 |
T |
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| Q |
220 |
gtctttttaaaaacacagaaggtaaatgaggaatgctcaaacaacttggagaaaataaa |
278 |
Q |
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|||||||||||||||||||||||||| | |||||| ||| ||||||||||||||||| |
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| T |
16418958 |
gtctttttaaaaacacagaaggtaaaggtggaatgatca---aacttggagaaaataaa |
16419013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 16418706 - 16418838
Alignment:
| Q |
4 |
caaattagcatcaaaattaacaaggtaaagaaattaaggaacttttttattattgaaacttagaaaccagagttacataaattcatctcatatctgtgta |
103 |
Q |
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||||| ||||||||| |||||||||||||| ||||||||||||||| || ||||||||||||||||||||| ||||||| |||||||||||| |||||| |
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| T |
16418706 |
caaatcagcatcaaacttaacaaggtaaaggaattaaggaacttttgaat-attgaaacttagaaaccagagctacataagttcatctcatatttgtgta |
16418804 |
T |
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| Q |
104 |
ccaaaaacatacacagaagcaaaagaatgccatt |
137 |
Q |
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| T |
16418805 |
ccaaaaacataaacagaagcaaaagaatgtcatt |
16418838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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