View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13824_high_6 (Length: 504)
Name: NF13824_high_6
Description: NF13824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13824_high_6 |
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| [»] scaffold0164 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 9 - 485
Target Start/End: Original strand, 9797987 - 9798463
Alignment:
| Q |
9 |
gagatgaaccaatatggtcacttgcaccagaatccacaatccatgatccaatatttgagtgattcaaggaataagagaactttgttatacctgatgtaac |
108 |
Q |
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| T |
9797987 |
gagatgaaccaatatggtcacttgcaccagaatccacaatccatgatccaatatttgagtgattcaaggaataagagaactttgttatacctgatgtaac |
9798086 |
T |
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| Q |
109 |
atgtgaaactagattaaccttgctagaagatgctgattgattagctgcagatcatgaacactgaagcagattcaccaactactcatattgatctttggtg |
208 |
Q |
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| T |
9798087 |
atgtgaaactagattaaccttgctagaagatgctgattgattagctgcagatcatgaacactgaagcagattcaccaactactcatattgatctttggtg |
9798186 |
T |
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| Q |
209 |
aaaccataagattcagttccttttacactccttgaatcatcaatgtcctccctgtcttcattcgtctcaagggaagagtgactttccatagcagaattct |
308 |
Q |
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| T |
9798187 |
aaaccataagattcagttccttttacactccttgaatcatcaatgtcctccctgtcttcattcgtctcaagggaagagtgacttgccatagcagaattct |
9798286 |
T |
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| Q |
309 |
ttccaaaatttggatgaaaacaatgtttcctataacaagtttcaatggtatgcccatttctaccacataaagaacaggtatgcgtctgatttgaggggaa |
408 |
Q |
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| T |
9798287 |
ttccaaaatttggatgaaaacaatgtttcctataacaagtttcaatggtatgcccatttctaccacaaaaagaacaggtatgcgtctgatttgaggggaa |
9798386 |
T |
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| Q |
409 |
tgaaggaccattgccacgtcccctaccttgtgatctcccataagaagcagcatttatgagaatttcggactcataaa |
485 |
Q |
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| T |
9798387 |
tgaaggaccattgccacgtcccctaccttgtgatttcccataagaagcagcatttatgagaattttggactcataaa |
9798463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 380
Target Start/End: Original strand, 6755046 - 6755130
Alignment:
| Q |
296 |
atagcagaattctttccaaaatttggatgaaaacaatgtttcctataacaagtttcaatggtatgcccatttctaccacataaag |
380 |
Q |
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| T |
6755046 |
atagcaggtttcttaccaaaatgtggaggaaaaccatgtttcttataacagctttcaattgtgtggccatttctaccacaaaaag |
6755130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 384
Target Start/End: Original strand, 17954 - 18030
Alignment:
| Q |
308 |
tttccaaaatttggatgaaaacaatgtttcctataacaagtttcaatggtatgcccatttctaccacataaagaaca |
384 |
Q |
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| T |
17954 |
tttccataatttggaggaaaaccatgtttcctataacatatatcaatggtgtggccatctctgccacagaaagaaca |
18030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 384
Target Start/End: Complemental strand, 15192020 - 15191944
Alignment:
| Q |
308 |
tttccaaaatttggatgaaaacaatgtttcctataacaagtttcaatggtatgcccatttctaccacataaagaaca |
384 |
Q |
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| T |
15192020 |
tttccataatttggaggaaaaccatgtttcctataacatatatcaatggtgtggccatctctgccacagaaagaaca |
15191944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 1615903 - 1615982
Alignment:
| Q |
191 |
tcatattgatctttggtgaaaccataagattcagttccttttacactccttgaatcatcaatgtcctccctgtcttcatt |
270 |
Q |
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| T |
1615903 |
tcatgttgttctttggtgaaaccatatgaatcattgcctttgtaaatctttgaatcatcaatgtcctccctttcttcatt |
1615982 |
T |
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