View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13824_low_10 (Length: 449)

Name: NF13824_low_10
Description: NF13824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13824_low_10
NF13824_low_10
[»] chr8 (22 HSPs)
chr8 (18-430)||(32924238-32924650)
chr8 (22-217)||(2524258-2524454)
chr8 (337-430)||(26046982-26047075)
chr8 (337-398)||(16706010-16706071)
chr8 (357-430)||(34545634-34545705)
chr8 (337-414)||(11988296-11988372)
chr8 (337-430)||(16706126-16706219)
chr8 (342-430)||(19327839-19327926)
chr8 (18-97)||(11658711-11658790)
chr8 (335-388)||(19328015-19328068)
chr8 (353-417)||(13131413-13131477)
chr8 (199-242)||(11658890-11658933)
chr8 (375-430)||(28280714-28280769)
chr8 (337-398)||(24866861-24866922)
chr8 (353-398)||(32131423-32131468)
chr8 (337-370)||(38895640-38895673)
chr8 (326-398)||(14262441-14262512)
chr8 (335-418)||(14942389-14942472)
chr8 (353-417)||(16972396-16972460)
chr8 (334-370)||(19925295-19925331)
chr8 (343-431)||(31459019-31459107)
chr8 (337-412)||(38195454-38195529)
[»] chr3 (17 HSPs)
chr3 (335-430)||(10448739-10448834)
chr3 (337-406)||(33946592-33946661)
chr3 (354-430)||(40581103-40581179)
chr3 (353-430)||(53218066-53218143)
chr3 (353-415)||(29270344-29270406)
chr3 (349-430)||(27769625-27769705)
chr3 (353-430)||(34707739-34707816)
chr3 (335-430)||(28741240-28741335)
chr3 (337-397)||(43971757-43971817)
chr3 (351-430)||(11528872-11528951)
chr3 (337-430)||(25341249-25341345)
chr3 (337-418)||(36266211-36266292)
chr3 (353-398)||(21296749-21296794)
chr3 (357-430)||(30383755-30383828)
chr3 (337-406)||(32901198-32901267)
chr3 (325-398)||(37243581-37243654)
chr3 (334-398)||(20174847-20174911)
[»] chr1 (19 HSPs)
chr1 (347-430)||(49971227-49971311)
chr1 (338-412)||(20169232-20169306)
chr1 (347-430)||(12256583-12256667)
chr1 (337-406)||(46473061-46473130)
chr1 (355-431)||(46689575-46689651)
chr1 (339-398)||(22593319-22593378)
chr1 (367-430)||(26542970-26543033)
chr1 (335-389)||(16708923-16708976)
chr1 (337-430)||(13038914-13039007)
chr1 (337-398)||(28122733-28122794)
chr1 (349-430)||(46501027-46501108)
chr1 (336-400)||(19220286-19220350)
chr1 (352-430)||(10850097-10850175)
chr1 (353-430)||(26946130-26946208)
chr1 (361-415)||(35897664-35897718)
chr1 (357-430)||(15631891-15631964)
chr1 (355-430)||(9572810-9572886)
chr1 (328-400)||(17814303-17814375)
chr1 (342-430)||(28122588-28122676)
[»] chr6 (15 HSPs)
chr6 (336-430)||(6632625-6632719)
chr6 (355-430)||(29623503-29623578)
chr6 (340-430)||(30533950-30534040)
chr6 (337-418)||(23239214-23239295)
chr6 (355-430)||(6758612-6758687)
chr6 (337-398)||(22816495-22816556)
chr6 (348-411)||(3829964-3830027)
chr6 (355-400)||(21609977-21610022)
chr6 (357-430)||(21610075-21610148)
chr6 (337-398)||(22816643-22816703)
chr6 (355-418)||(2040224-2040287)
chr6 (353-430)||(3211027-3211104)
chr6 (353-430)||(24625834-24625911)
chr6 (335-398)||(12816809-12816872)
chr6 (337-369)||(30534082-30534114)
[»] chr2 (15 HSPs)
chr2 (335-418)||(21788422-21788505)
chr2 (336-430)||(38471817-38471911)
chr2 (343-430)||(8441446-8441533)
chr2 (335-430)||(15155778-15155873)
chr2 (353-430)||(33321338-33321415)
chr2 (337-397)||(37409610-37409670)
chr2 (337-394)||(23956314-23956371)
chr2 (353-414)||(27703500-27703561)
chr2 (355-418)||(34913428-34913491)
chr2 (348-430)||(35515506-35515589)
chr2 (335-389)||(8441582-8441636)
chr2 (353-418)||(755780-755845)
chr2 (337-430)||(5516043-5516135)
chr2 (365-430)||(25836738-25836803)
chr2 (337-389)||(1768737-1768789)
[»] chr7 (15 HSPs)
chr7 (349-430)||(48021673-48021754)
chr7 (335-430)||(22032727-22032822)
chr7 (355-430)||(44613499-44613574)
chr7 (334-430)||(18855296-18855392)
chr7 (338-417)||(12473174-12473253)
chr7 (340-398)||(10412869-10412927)
chr7 (337-389)||(23119987-23120039)
chr7 (335-430)||(47654440-47654535)
chr7 (327-369)||(12473483-12473525)
chr7 (337-418)||(22575553-22575634)
chr7 (335-400)||(991612-991677)
chr7 (337-398)||(22032877-22032938)
chr7 (353-430)||(30181533-30181610)
chr7 (353-417)||(38372541-38372605)
chr7 (336-372)||(42083387-42083423)
[»] chr5 (28 HSPs)
chr5 (347-430)||(43318979-43319063)
chr5 (337-430)||(2878702-2878795)
chr5 (337-398)||(29657965-29658026)
chr5 (338-430)||(7364335-7364427)
chr5 (335-431)||(7565292-7565391)
chr5 (353-430)||(1372019-1372096)
chr5 (325-398)||(29418650-29418723)
chr5 (353-430)||(29922215-29922292)
chr5 (375-430)||(13625547-13625602)
chr5 (351-430)||(22573634-22573713)
chr5 (328-418)||(26002955-26003045)
chr5 (355-417)||(10537258-10537320)
chr5 (359-417)||(11991294-11991352)
chr5 (345-430)||(22201962-22202048)
chr5 (347-428)||(9477284-9477362)
chr5 (335-400)||(26003110-26003175)
chr5 (353-417)||(1473339-1473403)
chr5 (335-398)||(29659175-29659238)
chr5 (342-409)||(35078704-35078771)
chr5 (334-389)||(43010723-43010778)
chr5 (353-411)||(17128261-17128319)
chr5 (336-414)||(33757187-33757264)
chr5 (337-398)||(32964460-32964521)
chr5 (353-398)||(41059715-41059760)
chr5 (353-398)||(41125687-41125732)
chr5 (334-430)||(12467228-12467324)
chr5 (338-398)||(40152787-40152847)
chr5 (353-417)||(42852005-42852069)
[»] chr4 (18 HSPs)
chr4 (353-430)||(29877622-29877699)
chr4 (337-411)||(36298298-36298372)
chr4 (338-430)||(27368178-27368270)
chr4 (355-430)||(212974-213048)
chr4 (337-406)||(7206636-7206705)
chr4 (353-430)||(18424303-18424380)
chr4 (353-430)||(43699509-43699586)
chr4 (355-430)||(41228888-41228963)
chr4 (353-417)||(29996678-29996742)
chr4 (339-398)||(18630807-18630866)
chr4 (355-430)||(46704296-46704370)
chr4 (348-398)||(9319034-9319084)
chr4 (337-375)||(24101998-24102036)
chr4 (353-430)||(23297421-23297498)
chr4 (349-398)||(39116975-39117024)
chr4 (353-417)||(42611906-42611971)
chr4 (348-400)||(4603253-4603305)
chr4 (353-429)||(43415316-43415392)
[»] scaffold0332 (1 HSPs)
scaffold0332 (325-395)||(14645-14714)
[»] scaffold0191 (1 HSPs)
scaffold0191 (337-396)||(31245-31306)
[»] scaffold0012 (2 HSPs)
scaffold0012 (335-389)||(178626-178680)
scaffold0012 (328-412)||(178458-178542)


Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 32924650 - 32924238
Alignment:
Q  18 cttggaagaagaaatgtcaaatccatcggtgttgggactatgtggaggagattgaacatctaaattggagatttttgcacggttgcaaccatttatggtt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32924650 cttggaagaagaaatgtcaaatccatcggtgttgggactatgtgaaggagattgaacatctaaattggagatttttgcacggttgcaaccatttatggtt 32924551  T
Q  118 acatgagctcctgggctattactgattctcacgttacgaacactaagatcattgcaggcatggaaagataatatctgcaccatcaacataaaagtaatat 217  Q
     |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32924550 ccatgagctcctgggctattagtgattctcacgttacgaacactaagatcattgcaggcatagaaagataatatctgcaccatcaacataaaagtaatat 32924451  T
Q  218 gatatacaatcacttaaaatttatatcagttatttgagaatgcaaatctatttgttgggggaaaatagttttttaagttgctatacaatgtaaaaaataa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32924450 gatatacaatcacttaaaatttatatcagttatttgagaatgcaaatctatttgttgggggaaaatagttttttaaggtgctatacaatgtaaaaaataa 32924351  T
Q  318 tttgtctgtttaaggctctgtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgt 417  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  32924350 tttgtctgtttaaggctctgtttgaattaagtttattttgagcttatgcaaaacagcttatgcgaataaatatgcttttatttgttatttataagcttgt 32924251  T
Q  418 ttatgtagtttat 430  Q
    |||||||||||||    
T  32924250 ttatgtagtttat 32924238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 2524454 - 2524258
Alignment:
Q  22 gaagaagaaatgtcaaatccatcggtgttgggactatgtggaggagattgaacatctaaattggagatttttgcacggttgcaaccatttatggttacat 121  Q
    |||| |||||||||||||||||| |||||||| ||||| | |||||| | ||   ||| |||||||| |||||||| || |||||||||||||| || ||    
T  2524454 gaagcagaaatgtcaaatccatcagtgttggggctatgagcaggagaatcaattactacattggagaattttgcaccgtagcaaccatttatggctatat 2524355  T
Q  122 gagctcctgggctattactgattctcacgttacgaacactaagatcattgcaggcatggaaagataatatctgcacca-tcaacataaaagtaatat 217  Q
    || |||| ||||||||  ||||  | |  || | |||||||||||||||||| | ||||||||| || | ||| |||| ||||||||||| ||||||    
T  2524354 gacctcccgggctattggtgatctttagttttctaacactaagatcattgcaagaatggaaagacaagacctgtaccattcaacataaaattaatat 2524258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 337 - 430
Target Start/End: Complemental strand, 26047075 - 26046982
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||| ||||||||||||||||||| ||||||| |||||| || || || |||||||||| ||||| | ||||||||| | |||||||||    
T  26047075 gtttggattgagcttattttgagcttatgtaaaacaacttatgcaaaaaagtaagcttttatttattattaacaagcttgttgaggtagtttat 26046982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 398
Target Start/End: Original strand, 16706010 - 16706071
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    |||||||||| |||||||||||||||||||||||||  |||||| |||||||| ||||||||    
T  16706010 gtttggattaggcttattttgagcttatgcaaaacagcttatgcaaataaatacgcttttat 16706071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 357 - 430
Target Start/End: Complemental strand, 34545705 - 34545634
Alignment:
Q  357 gagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||||||| ||||||||| ||||||||||  ||||  ||||||||||||| ||||| |||||||||||    
T  34545705 gagcttatgcaaaataatttatgcaaataaatatgtcttta--tgttatttataagtttgttaatgtagtttat 34545634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 414
Target Start/End: Complemental strand, 11988372 - 11988296
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagct 414  Q
    |||||| || ||||||||||||||||||| |||| || |||||  ||||||||||||||||||| | |||||||||||    
T  11988372 gtttggtttgagcttattttgagcttatgaaaaataacttatgtaaataaatatgcttttattt-taatttataagct 11988296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 430
Target Start/End: Complemental strand, 16706219 - 16706126
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||| | ||||||||||||||||||||||   |||||| |||||||||| |||||| | ||||| ||||| |||   |||||||||||    
T  16706219 gtttggattaggtttattttgagcttatgcaaaacggcttatgcaaataaatatgtttttatgtattattcataagtttgaaaatgtagtttat 16706126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 430
Target Start/End: Original strand, 19327839 - 19327926
Alignment:
Q  342 gattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||| ||||||||| |||||||||||||||| |||||| ||||||||  ||||||| | ||||| ||||| ||| | |||||||||||    
T  19327839 gattatgcttatttttagcttatgcaaaacaacttatgcaaataaataaacttttatgtattattcataagtttg-taatgtagtttat 19327926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 11658711 - 11658790
Alignment:
Q  18 cttggaagaagaaatgtcaaatccatcggtgttgggactatgtggaggagattgaacatctaaattggagatttttgcac 97  Q
    |||||||| |||||| ||||||||||||||||| || ||||  | ||||||||||| ||||| |||||||| ||| ||||    
T  11658711 cttggaagtagaaatatcaaatccatcggtgttagggctataagaaggagattgaatatctatattggagaatttcgcac 11658790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 19328068 - 19328015
Alignment:
Q  335 ctgtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaat 388  Q
    ||||||||| ||  |||||||||||||||||||||||| ||||||| |||||||    
T  19328068 ctgtttggactagtcttattttgagcttatgcaaaacattttatgcaaataaat 19328015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 13131413 - 13131477
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgt 417  Q
    |||| |||||||||||||||| |||||| |||||||| |||||||| | ||||| ||||| ||||    
T  13131413 tttttagcttatgcaaaacaaattatgcaaataaataagcttttatgtattattcataagtttgt 13131477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 11658890 - 11658933
Alignment:
Q  199 atcaacataaaagtaatatgatatacaatcacttaaaatttata 242  Q
    |||||||| ||| |||||||||||||||||| ||||||||||||    
T  11658890 atcaacatgaaattaatatgatatacaatcatttaaaatttata 11658933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 430
Target Start/End: Original strand, 28280714 - 28280769
Alignment:
Q  375 ttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||| ||||||||||| ||||| | ||||||||||| ||||| |||||||||||    
T  28280714 ttatgcaaataaatatgcatttatgtattatttataagtttgttaatgtagtttat 28280769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 398
Target Start/End: Original strand, 24866861 - 24866922
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    ||||||||| ||||||||||||||||||| |||| |  |||||| |||||||| | ||||||    
T  24866861 gtttggattgagcttattttgagcttatgaaaaagagcttatgcaaataaataagtttttat 24866922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 398
Target Start/End: Original strand, 32131423 - 32131468
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    ||||||||||||||||||||  |||||| |||||||| ||||||||    
T  32131423 ttttgagcttatgcaaaacagcttatgcaaataaataagcttttat 32131468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 370
Target Start/End: Original strand, 38895640 - 38895673
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaa 370  Q
    ||||||||||||||||||| ||||||||||||||    
T  38895640 gtttggattaagcttatttcgagcttatgcaaaa 38895673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 14262512 - 14262441
Alignment:
Q  326 tttaaggctctgtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    |||||||| ||||||||||| ||||||||||||||||||  |||| || |||||| || ||||| | ||||||    
T  14262512 tttaaggc-ctgtttggattgagcttattttgagcttataaaaaagaacttatgcaaaaaaataagtttttat 14262441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 418
Target Start/End: Original strand, 14942389 - 14942472
Alignment:
Q  335 ctgtttggattaagcttatttt-gagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtt 418  Q
    |||||||||||  ||||||||| ||||||||| ||||||| |||||   ||||||| |||||| | | |||||||||||||||||    
T  14942389 ctgtttggattg-gcttattttagagcttatgtaaaacaacttatgtatataaataagcttttgtgtattatttataagcttgtt 14942472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 417
Target Start/End: Complemental strand, 16972460 - 16972396
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgt 417  Q
    |||| ||||||||||||||||||| ||| |||||||| |||| ||| | ||||| ||||| ||||    
T  16972460 tttttagcttatgcaaaacaatttttgcaaataaataagcttgtatgtattattcataagtttgt 16972396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 370
Target Start/End: Original strand, 19925295 - 19925331
Alignment:
Q  334 tctgtttggattaagcttattttgagcttatgcaaaa 370  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  19925295 tctgtttggattgagcttattttgagcttatgaaaaa 19925331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 431
Target Start/End: Original strand, 31459019 - 31459107
Alignment:
Q  343 attaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttata 431  Q
    |||||| |||||||||||||||| ||| || ||||||  ||||||||   |||||| | ||||||||||| ||||  || |||||||||    
T  31459019 attaagtttattttgagcttatgaaaagcagtttatgtaaataaataaatttttatatattatttataagtttgtcaatatagtttata 31459107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 412
Target Start/End: Original strand, 38195454 - 38195529
Alignment:
Q  337 gtttggattaagcttatttt-gagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataag 412  Q
    |||||||||| ||||||||| ||||||||  ||||||| |||||| |||||||| | |||||| | |||||||||||    
T  38195454 gtttggatta-gcttattttagagcttatataaaacaacttatgcaaataaataagtttttatatattatttataag 38195529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 335 - 430
Target Start/End: Original strand, 10448739 - 10448834
Alignment:
Q  335 ctgtttggattaagcttatttt-gagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||||| ||||||||| ||||||||||||||||| |||||| ||||||||||| ||||| | ||||||||||||||||| |||||||||||    
T  10448739 ctgtttggatta-gcttattttagagcttatgcaaaacaacttatgcaaataaatatgcctttatgtattatttataagcttgttaatgtagtttat 10448834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 406
Target Start/End: Complemental strand, 33946661 - 33946592
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatt 406  Q
    ||||||||| |||||||||||||||||||||||| |  |||||| |||||||| |||||||||| |||||    
T  33946661 gtttggattgagcttattttgagcttatgcaaaatagcttatgcaaataaataagcttttatttattatt 33946592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 430
Target Start/End: Complemental strand, 40581179 - 40581103
Alignment:
Q  354 tttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||||||||||||| |||||| |||||||| |||||||| | ||||| ||||||||||  | |||||||||    
T  40581179 tttgagcttatgcaaaacaacttatgcaaataaataagcttttatgtattattaataagcttgtcaaggtagtttat 40581103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 430
Target Start/End: Complemental strand, 53218143 - 53218066
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||| |||||||||||||||| ||||||||||||||| | |||||| | ||||| ||||||||||  | |||||||||    
T  53218143 tttttagcttatgcaaaacaacttatgcgaataaataagattttatgtattattcataagcttgtcaaggtagtttat 53218066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 415
Target Start/End: Original strand, 29270344 - 29270406
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagctt 415  Q
    ||||||||||||||||||||| ||||  ||||||||| |||||||| | ||||| ||||||||    
T  29270344 ttttgagcttatgcaaaacaacttataggaataaataagcttttatgtattattcataagctt 29270406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 430
Target Start/End: Original strand, 27769625 - 27769705
Alignment:
Q  349 cttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||||| ||||||||||||| |||||| |||||||   ||||| | | ||||||||||||||||  |||||||||||    
T  27769625 cttattttgagtttatgcaaaacaacttatgcaaataaatgaactttt-tatattatttataagcttgtcaatgtagtttat 27769705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 430
Target Start/End: Complemental strand, 34707816 - 34707739
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||||||||||||||| ||| |  |||| ||| |||||||| | ||||| ||||||||||| | |||||||||    
T  34707816 ttttgagcttatgcaaaacaacttacgtaaatatataagcttttatgtattattcataagcttgttaaggtagtttat 34707739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 430
Target Start/End: Complemental strand, 28741335 - 28741240
Alignment:
Q  335 ctgtttggattaagcttatttt-gagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||||| ||||||||| ||| | ||||||||||  |||||| ||||||||| | ||||| | ||| ||||||||||||| | |||||||||    
T  28741335 ctgtttggatta-gcttattttagagttcatgcaaaacagcttatgcaaataaatattcctttatgtattacttataagcttgttaaagtagtttat 28741240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 397
Target Start/End: Original strand, 43971757 - 43971817
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgctttta 397  Q
    ||||||||| || |||||||||||||||| |||| || |||||| |||||||||| |||||    
T  43971757 gtttggattgagtttattttgagcttatgaaaaataacttatgcaaataaatatgttttta 43971817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 430
Target Start/End: Original strand, 11528872 - 11528951
Alignment:
Q  351 tattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||| |||||||||||||| |||||  | |||||| |||||||| | ||||| ||||  ||||| |||||||||||    
T  11528872 tattttgaacttatgcaaaacaacttatgtaagtaaataagcttttatgtattattcataaatttgttaatgtagtttat 11528951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 430
Target Start/End: Original strand, 25341249 - 25341345
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttat---ttataagcttgtttatgtagtttat 430  Q
    ||||||||| ||| ||||||||||||||| ||||||   ||||| |||||||| ||||| |||| ||||   | ||||||||||| | |||||||||    
T  25341249 gtttggattgagcgtattttgagcttatgtaaaacagcatatgcaaataaataagctttcatttattattactcataagcttgttaaggtagtttat 25341345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 418
Target Start/End: Original strand, 36266211 - 36266292
Alignment:
Q  337 gtttggattaagcttatttt-gagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtt 418  Q
    |||||||||| ||||||||| ||||||||  |||||| ||||||| ||||||||  ||||||| | ||||||||||| |||||    
T  36266211 gtttggatta-gcttattttagagcttatataaaacagtttatgcaaataaataaacttttatgtattatttataagtttgtt 36266292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 398
Target Start/End: Original strand, 21296749 - 21296794
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    ||||||| |||||||||||||||||||| |||||||| | ||||||    
T  21296749 ttttgagattatgcaaaacaatttatgcaaataaataagtttttat 21296794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 430
Target Start/End: Original strand, 30383755 - 30383828
Alignment:
Q  357 gagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||||||| | |||||||||||||| | || || || ||||||||||||  ||||| | |||||||||    
T  30383755 gagcttatgcaaaatagtttatgcgaataaagaagcattaatgtgttatttataaatttgttaaggtagtttat 30383828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 406
Target Start/End: Complemental strand, 32901267 - 32901198
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatt 406  Q
    |||| |||| |||||||||| ||  |||||||||||| |||||  |||||||| |||||||||| |||||    
T  32901267 gtttagattgagcttattttaagtatatgcaaaacaacttatgtaaataaataagcttttatttattatt 32901198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 398
Target Start/End: Complemental strand, 37243654 - 37243581
Alignment:
Q  325 gtttaaggctctgtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    ||||||||| | ||||||||  ||||||||||||||||||| |||| |  |||||| ||||| || ||||||||    
T  37243654 gtttaaggccccgtttggatagagcttattttgagcttatgaaaaagagcttatgcaaataagtaagcttttat 37243581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 20174847 - 20174911
Alignment:
Q  334 tctgtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    |||||||||||| ||||| ||||||| ||||| |||| |  |||||| |||||||| ||||||||    
T  20174847 tctgtttggattgagcttcttttgaggttatgaaaaagagcttatgcaaataaataagcttttat 20174911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 347 - 430
Target Start/End: Original strand, 49971227 - 49971311
Alignment:
Q  347 agcttatttt-gagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||| ||||||||||||||||| |||||| ||||||||| | ||||||| ||||||||||||||||| |||||||||||    
T  49971227 agcttattttagagcttatgcaaaacaacttatgcaaataaatattcctttatttattatttataagcttgttaatgtagtttat 49971311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 412
Target Start/End: Original strand, 20169232 - 20169306
Alignment:
Q  338 tttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataag 412  Q
    |||||||||||||||||||||||||||| ||||||  |||||| |||||||| |||||||| | |||||||||||    
T  20169232 tttggattaagcttattttgagcttatgaaaaacagcttatgcaaataaataagcttttatgtattatttataag 20169306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 430
Target Start/End: Original strand, 12256583 - 12256667
Alignment:
Q  347 agcttatttt-gagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||| ||||||||||||||||| |||||  ||||| ||||||||||| | ||||||||||| ||||| |||||||||||    
T  12256583 agcttattttagagcttatgcaaaacaacttatgtaaataattatgcttttatatattatttataagattgttgatgtagtttat 12256667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 406
Target Start/End: Original strand, 46473061 - 46473130
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatt 406  Q
    ||||||||| ||||||||||||||||||||||||||  || ||  |||||||| |||||||||| |||||    
T  46473061 gtttggattgagcttattttgagcttatgcaaaacagcttgtgtaaataaataagcttttatttattatt 46473130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 431
Target Start/End: Complemental strand, 46689651 - 46689575
Alignment:
Q  355 ttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttata 431  Q
    |||||||||||||||||| ||||||| |||||| | |||||||||| ||||| || |||||||| | ||| ||||||    
T  46689651 ttgagcttatgcaaaacagtttatgcaaataaaaaagcttttatttattattcatgagcttgttaaggtattttata 46689575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 398
Target Start/End: Original strand, 22593319 - 22593378
Alignment:
Q  339 ttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    ||||||||||||||| | ||||||||||||||||  |||||| |||||||| ||||||||    
T  22593319 ttggattaagcttatctggagcttatgcaaaacagcttatgcaaataaataagcttttat 22593378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 430
Target Start/End: Original strand, 26542970 - 26543033
Alignment:
Q  367 aaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||| |||||| ||||||||||||||||| | |||| |||||| ||||| |||||||||||    
T  26542970 aaaacaacttatgcaaataaatatgcttttatgtattatatataagtttgttaatgtagtttat 26543033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 16708976 - 16708923
Alignment:
Q  335 ctgtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaata 389  Q
    ||||||||||||||||||||||||||||||| ||||  |||||||| ||||||||    
T  16708976 ctgtttggattaagcttattttgagcttatg-aaaaagatttatgcaaataaata 16708923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 430
Target Start/End: Original strand, 13038914 - 13039007
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||| ||||||| ||||| |||||||||||   | |||| |||||||| |||||||| | ||||| || |||||||| | |||||||||    
T  13038914 gtttggattgagcttatgttgaggttatgcaaaacggctgatgcaaataaataagcttttatatattattcatgagcttgttaaggtagtttat 13039007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 28122794 - 28122733
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    ||||| ||||||||||||||||||||||| |||| | ||||||  |||||||| ||||||||    
T  28122794 gtttgtattaagcttattttgagcttatgaaaaatagtttatgaaaataaataagcttttat 28122733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 430
Target Start/End: Complemental strand, 46501108 - 46501027
Alignment:
Q  349 cttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||||||||||  |||||||||||||  |||||||  |||||| | | ||||||||||||||||   ||||||||||    
T  46501108 cttattttgagcttatataaaacaatttatgtaaataaatgagcttttttgtattatttataagcttgtcattgtagtttat 46501027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 400
Target Start/End: Complemental strand, 19220350 - 19220286
Alignment:
Q  336 tgtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttattt 400  Q
    ||||||| || || |||||||||||||||| |||| | ||||||| |||||||| ||||||||||    
T  19220350 tgtttggtttgagtttattttgagcttatgaaaaatagtttatgcaaataaataagcttttattt 19220286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 430
Target Start/End: Complemental strand, 10850175 - 10850097
Alignment:
Q  352 attttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||||||||||||| | ||| ||| |||||||| |||||||| | ||||| ||||| ||||  | |||||||||    
T  10850175 attttgagcttatgcaaaatagtttttgcaaataaataagcttttatgtattattcataaggttgtcaacgtagtttat 10850097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 430
Target Start/End: Complemental strand, 26946208 - 26946130
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgctttt-atttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||||||||||||   |||||  |||||||| |||||| || ||||||| ||||||||||| | |||||||||    
T  26946208 ttttgagcttatgcaaaacggcttatgtaaataaataagctttttatgtgttattcataagcttgttaaggtagtttat 26946130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 35897718 - 35897664
Alignment:
Q  361 ttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagctt 415  Q
    ||||||||||||| |||||| |||||||| | |||||||| ||||| ||||||||    
T  35897718 ttatgcaaaacaacttatgcaaataaataagtttttatttattattcataagctt 35897664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 430
Target Start/End: Original strand, 15631891 - 15631964
Alignment:
Q  357 gagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||| |||||||| |||| | |||||||| | |||||| | ||||||||||| ||||| ||||| |||||    
T  15631891 gagcttatacaaaacaacttatacaaataaataagtttttatgtattatttataagtttgttaatgtattttat 15631964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 430
Target Start/End: Complemental strand, 9572886 - 9572810
Alignment:
Q  355 ttgagcttatgcaaaacaatttatgcgaataaatatgc-ttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||||||||||||  || ||| |||||||| || |||||||| ||||| ||||| ||||| | |||||||||    
T  9572886 ttgagcttatgcaaaacagcttttgcaaataaataagctttttatttattattcataagtttgttaaggtagtttat 9572810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 400
Target Start/End: Complemental strand, 17814375 - 17814303
Alignment:
Q  328 taaggctctgtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttattt 400  Q
    |||||||| |||||  || ||||||||||||||||||| |||| |  |||||  |||||||| ||||||||||    
T  17814375 taaggctccgtttgatttgagcttattttgagcttatgaaaaatagcttatgtaaataaataagcttttattt 17814303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 430
Target Start/End: Original strand, 28122588 - 28122676
Alignment:
Q  342 gattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||| ||||||||||||  ||||||||| ||  |||||| |||||||  |||||||||| ||||| || ||||| || | |||||||||    
T  28122588 gattcagcttattttgaatttatgcaaatcagcttatgcaaataaattagcttttatttattattcatgagcttcttaaggtagtttat 28122676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 336 - 430
Target Start/End: Original strand, 6632625 - 6632719
Alignment:
Q  336 tgtttggattaagcttatttt-gagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||||| ||||||||| |||||||| |||||||| |||||| ||||||||||||||||| | |||||||||| |||||| |||||||||||    
T  6632625 tgtttggatta-gcttattttagagcttattcaaaacaacttatgcaaataaatatgcttttatgtattatttataaacttgttaatgtagtttat 6632719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 355 - 430
Target Start/End: Complemental strand, 29623578 - 29623503
Alignment:
Q  355 ttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||||||||||||| |||||| ||||||||  ||||||||| |||||||| || ||||| |||||||||||    
T  29623578 ttgagcttatgcaaaacaacttatgcaaataaataaccttttatttattatttatgagtttgttaatgtagtttat 29623503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 340 - 430
Target Start/End: Original strand, 30533950 - 30534040
Alignment:
Q  340 tggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||| ||||||||||||||| |||||||||  |||||| |||||||| |||||||| | ||||| ||||| ||||  |||||||||||    
T  30533950 tggattaggcttattttgagcttgtgcaaaacagcttatgcaaataaataagcttttatgtattattcataagtttgtaaatgtagtttat 30534040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 418
Target Start/End: Original strand, 23239214 - 23239295
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtt 418  Q
    ||||||||| || |||||||||||||||| |||| || |||| | |||||||| |||||||||| ||||| |||||||||||    
T  23239214 gtttggattgagtttattttgagcttatgaaaaataacttatacaaataaataagcttttatttattattcataagcttgtt 23239295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 430
Target Start/End: Original strand, 6758612 - 6758687
Alignment:
Q  355 ttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||||||||||||| |||||| |||||||| |||||| ||| ||||  ||||||||||| | |||||||||    
T  6758612 ttgagcttatgcaaaacaacttatgcaaataaataagcttttgtttattatccataagcttgttaaggtagtttat 6758687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 398
Target Start/End: Original strand, 22816495 - 22816556
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    |||||||||| |||||||||||||||| |||||||| ||||||| |||||||| | ||||||    
T  22816495 gtttggattatgcttattttgagcttaagcaaaacagtttatgcaaataaataagtttttat 22816556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 411
Target Start/End: Complemental strand, 3830027 - 3829964
Alignment:
Q  348 gcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataa 411  Q
    |||||||||||||||||| |||||   |||||| |||||||| |||||||||||||||| ||||    
T  3830027 gcttattttgagcttatgaaaaacggcttatgcaaataaatacgcttttatttgttattcataa 3829964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 400
Target Start/End: Original strand, 21609977 - 21610022
Alignment:
Q  355 ttgagcttatgcaaaacaatttatgcgaataaatatgcttttattt 400  Q
    |||||||||||||||||||||||||| |||||||| | ||||||||    
T  21609977 ttgagcttatgcaaaacaatttatgcaaataaataagtttttattt 21610022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 430
Target Start/End: Complemental strand, 21610148 - 21610075
Alignment:
Q  357 gagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||||||||||  |||||| |||||||||   |||||   ||||||||||||||||| |||||||||||    
T  21610148 gagcttatgcaaaacagcttatgcaaataaatatttctttatgaattatttataagcttgttaatgtagtttat 21610075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 22816703 - 22816643
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    ||||||||||||||||||| ||||||||  |||||||||||||| |||||||| | ||||||    
T  22816703 gtttggattaagcttattt-gagcttataaaaaacaatttatgcaaataaataagtttttat 22816643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 418
Target Start/End: Complemental strand, 2040287 - 2040224
Alignment:
Q  355 ttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtt 418  Q
    ||||||||||||||||||| ||||   |||||||| |||||||||| ||||| ||||| |||||    
T  2040287 ttgagcttatgcaaaacaacttatataaataaataagcttttatttattattcataagtttgtt 2040224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 430
Target Start/End: Complemental strand, 3211104 - 3211027
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||| ||||| |||||||||  |||||| |||||||| |||||||| | ||| | ||||||||||  |||||||||||    
T  3211104 tttttagcttgtgcaaaacagcttatgcaaataaataagcttttatgtattactgataagcttgtcaatgtagtttat 3211027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 430
Target Start/End: Original strand, 24625834 - 24625911
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||| ||| |||| ||||  ||||| |||||||| |||||||| | ||||| ||||||||||| | |||||||||    
T  24625834 ttttgaggttaggcaagacaacatatgcaaataaatacgcttttatgtattattcataagcttgttaaggtagtttat 24625911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 12816809 - 12816872
Alignment:
Q  335 ctgtttggattaagctta-ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    ||||||||||||| |||| ||||||||||||| |||| | ||||||| |||||||| ||||||||    
T  12816809 ctgtttggattaa-cttatttttgagcttatgaaaaatagtttatgcaaataaataagcttttat 12816872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 30534114 - 30534082
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaa 369  Q
    |||||||||| ||||||||||||||||||||||    
T  30534114 gtttggattaggcttattttgagcttatgcaaa 30534082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 335 - 418
Target Start/End: Original strand, 21788422 - 21788505
Alignment:
Q  335 ctgtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtt 418  Q
    ||||||||||| ||||||||||||| ||||||||||||  |||||| |||||||| |||||||||| ||||| |||||||||||    
T  21788422 ctgtttggattgagcttattttgagtttatgcaaaacatcttatgcaaataaataagcttttatttattattcataagcttgtt 21788505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 336 - 430
Target Start/End: Complemental strand, 38471911 - 38471817
Alignment:
Q  336 tgtttggattaagcttatttt-gagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||||| ||||||||| ||||||||||||||||  |||||| ||||||||||||||||| |||||| ||||||||| || |||||||||||    
T  38471911 tgtttggatta-gcttattttcgagcttatgcaaaacagcttatgcaaataaatatgcttttatgtgttatgtataagcttcttgatgtagtttat 38471817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 343 - 430
Target Start/End: Original strand, 8441446 - 8441533
Alignment:
Q  343 attaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||| |||| ||||||||||||| ||  |||||| |||||||||| |||||| | ||||||||||| ||||| |||||||||||    
T  8441446 attaagctcatttagagcttatgcaaagcagcttatgcaaataaatatgtttttatgtattatttataagtttgttaatgtagtttat 8441533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 430
Target Start/End: Original strand, 15155778 - 15155873
Alignment:
Q  335 ctgtttggattaagcttattttgag-cttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||||| ||||||||| || |||||| ||||||| |||||  ||||||||||||||||| | |||||||||| |||||| ||| |||||||    
T  15155778 ctgtttggatta-gcttattttaaggcttatgtaaaacaacttatgaaaataaatatgcttttatgtattatttataatcttgttaatgaagtttat 15155873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 430
Target Start/End: Complemental strand, 33321415 - 33321338
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||||||||||||||| || ||| |||||||| |||||||| | ||||| ||||||||||  | |||||||||    
T  33321415 ttttgagcttatgcaaaacaacttgtgcaaataaataagcttttatgtcttattcataagcttgtcaaggtagtttat 33321338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 397
Target Start/End: Original strand, 37409610 - 37409670
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgctttta 397  Q
    ||||||||||  |||||||||||| |||||||||||| |||||| |||||||| |||||||    
T  37409610 gtttggattagtcttattttgagcgtatgcaaaacaacttatgcaaataaataagctttta 37409670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 394
Target Start/End: Complemental strand, 23956371 - 23956314
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgctt 394  Q
    |||||||||| ||||||||| |||||||||||||||  |||||| |||||||| ||||    
T  23956371 gtttggattaggcttattttaagcttatgcaaaacagcttatgcaaataaataagctt 23956314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 414
Target Start/End: Complemental strand, 27703561 - 27703500
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagct 414  Q
    ||||||||||||||||||||  |||||| |||||||| |||||||| | ||||| |||||||    
T  27703561 ttttgagcttatgcaaaacagcttatgcaaataaataagcttttatatattattcataagct 27703500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 418
Target Start/End: Complemental strand, 34913491 - 34913428
Alignment:
Q  355 ttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtt 418  Q
    ||||||||||||||||||  |||||| |||||||| |||||||| | ||||| ||||| |||||    
T  34913491 ttgagcttatgcaaaacagcttatgcaaataaataagcttttatgtattattcataagtttgtt 34913428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 430
Target Start/End: Complemental strand, 35515589 - 35515506
Alignment:
Q  348 gcttatttt-gagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||| ||||||||| |||||| |||| |  ||||||||||  ||||| | ||||||||||| ||||| |||||||||||    
T  35515589 gcttattttagagcttatgtaaaacagtttacgtaaataaatatgtctttatgtattatttataagtttgttaatgtagtttat 35515506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 8441636 - 8441582
Alignment:
Q  335 ctgtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaata 389  Q
    ||||||||||| ||||||||||||||||||| ||||   ||||||| ||||||||    
T  8441636 ctgtttggattgagcttattttgagcttatgaaaaagtgtttatgcaaataaata 8441582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 755845 - 755780
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtt 418  Q
    ||||||||||||||||||||| ||| || ||||| || |||||||| | ||||| | |||||||||    
T  755845 ttttgagcttatgcaaaacaacttacgcaaataattaagcttttatgtattattcagaagcttgtt 755780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 430
Target Start/End: Original strand, 5516043 - 5516135
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||| ||| ||||||||||| |||||||||  |||||  || ||||| |||| ||| ||||||| ||||| ||||  |||||||||||    
T  5516043 gtttggattaggct-attttgagcttttgcaaaacagcttatgtaaaaaaataagcttctatgtgttattcataagtttgtaaatgtagtttat 5516135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 430
Target Start/End: Complemental strand, 25836803 - 25836738
Alignment:
Q  365 gcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||  |||||| ||||||||||||||||| | ||||| ||||||||||  | |||||||||    
T  25836803 gcaaaacagcttatgcaaataaatatgcttttatgtattattcataagcttgtcaaggtagtttat 25836738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 389
Target Start/End: Original strand, 1768737 - 1768789
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaata 389  Q
    ||||| |||| |||||||||||| ||||||||||||  |||||| ||||||||    
T  1768737 gtttgaattaggcttattttgagtttatgcaaaacagcttatgcaaataaata 1768789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 349 - 430
Target Start/End: Complemental strand, 48021754 - 48021673
Alignment:
Q  349 cttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||| |||||| ||||| ||||||||||| | |||||||||    
T  48021754 cttattttgagcttatacaaaacaatttatgcaaataaataagctcttatttattattcataagcttgttaaagtagtttat 48021673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 335 - 430
Target Start/End: Original strand, 22032727 - 22032822
Alignment:
Q  335 ctgtttggattaagcttatttt-gagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||||| ||||||||| ||||||||| ||||||| |||||| |||||||||| |||||| | |||||||||||| |||| |||||||||||    
T  22032727 ctgtttggatta-gcttattttagagcttatgtaaaacaacttatgcaaataaatatgtttttatgtattatttataagcatgttaatgtagtttat 22032822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 355 - 430
Target Start/End: Complemental strand, 44613574 - 44613499
Alignment:
Q  355 ttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||||||||||||  |||||| |||||||| |||||||||| ||||| ||||||||||| | |||||||||    
T  44613574 ttgagcttatgcaaaacagcttatgcaaataaataagcttttatttattattcataagcttgttaaggtagtttat 44613499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 430
Target Start/End: Complemental strand, 18855392 - 18855296
Alignment:
Q  334 tctgtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||||| | ||||||||||||||||| |||||||||||||   |||||||  |||||| | |  ||| |||||||||||  |||||||||||    
T  18855392 tctgtttggataaggcttattttgagcttattcaaaacaatttatataaataaatgagcttttttgtaatatgtataagcttgtcaatgtagtttat 18855296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 417
Target Start/End: Original strand, 12473174 - 12473253
Alignment:
Q  338 tttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgt 417  Q
    ||||||||| | |||||||||||||||||||||||| |||||| || ||||| | |||||| | ||||| ||||| ||||    
T  12473174 tttggattaggtttattttgagcttatgcaaaacaacttatgcaaacaaataagtttttatgtattattcataagtttgt 12473253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 10412927 - 10412869
Alignment:
Q  340 tggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    ||||||| ||||||||||| |||||| |||||||||||||| |||||||| | ||||||    
T  10412927 tggattatgcttattttgaacttatgtaaaacaatttatgcaaataaataagtttttat 10412869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 389
Target Start/End: Complemental strand, 23120039 - 23119987
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaata 389  Q
    |||||||| | ||||||||||||||||||||||||||  ||||| ||||||||    
T  23120039 gtttggataaggcttattttgagcttatgcaaaacaacctatgcaaataaata 23119987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 430
Target Start/End: Complemental strand, 47654535 - 47654440
Alignment:
Q  335 ctgtttggattaagcttatttt-gagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||||| ||||||||| |||||| |||||||||  |||||  |||||||||||  | || | |||| |||||||||||| |||||||||||    
T  47654535 ctgtttggatta-gcttattttagagcttttgcaaaacagcttatgtaaataaatatgccctgatgtattatatataagcttgttaatgtagtttat 47654440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 12473525 - 12473483
Alignment:
Q  327 ttaaggctctgtttggattaagcttattttgagcttatgcaaa 369  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||    
T  12473525 ttaagggtctgtttggattaggcttattttgagcttattcaaa 12473483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 418
Target Start/End: Original strand, 22575553 - 22575634
Alignment:
Q  337 gtttggattaagcttatttt-gagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtt 418  Q
    ||||||||||| |||||||| ||||||||| ||||||  |||||| |||||||| | |||||| | ||||||||||| |||||    
T  22575553 gtttggattaa-cttattttagagcttatgtaaaacatcttatgcaaataaatacgtttttatgtattatttataagtttgtt 22575634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 400
Target Start/End: Complemental strand, 991677 - 991612
Alignment:
Q  335 ctgtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttattt 400  Q
    |||||||| || ||||||||||||||||||| |||| |  |||||  |||||||| ||||||||||    
T  991677 ctgtttggtttgagcttattttgagcttatgaaaaatagcttatgtaaataaataagcttttattt 991612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 22032938 - 22032877
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    ||||||||| ||||||||||||||||||| |||| |  |||||| |||||||| | ||||||    
T  22032938 gtttggattgagcttattttgagcttatgaaaaaaagcttatgcaaataaataagtttttat 22032877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 430
Target Start/End: Original strand, 30181533 - 30181610
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||||||||| |||| ||| || |||||| | |||||||| | ||||| ||||||||||  | |||||||||    
T  30181533 ttttgagcttatgcaatacaacttaggcaaataaagaagcttttatgtattattcataagcttgtcaaggtagtttat 30181610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 38372541 - 38372605
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgt 417  Q
    ||||||||||||||||||||  |||||| |||||||| ||| |||| | ||||| ||||| ||||    
T  38372541 ttttgagcttatgcaaaacagcttatgcaaataaataagctcttatgtattattcataagtttgt 38372605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 42083387 - 42083423
Alignment:
Q  336 tgtttggattaagcttattttgagcttatgcaaaaca 372  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  42083387 tgtttggatttagcttgttttgagcttatgcaaaaca 42083423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 347 - 430
Target Start/End: Original strand, 43318979 - 43319063
Alignment:
Q  347 agcttatttt-gagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||| ||||||||||||||||| |||||| ||||||||||  ||||| | ||||||||||||||||| |||||||||||    
T  43318979 agcttattttagagcttatgcaaaacaacttatgcaaataaatatgtctttatgtattatttataagcttgttaatgtagtttat 43319063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 430
Target Start/End: Complemental strand, 2878795 - 2878702
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||| ||||||||||||||||||| |||||  |||||| |||||||| |||||||| | ||||| ||||| ||||  |||| ||||||    
T  2878795 gtttggattaggcttattttgagcttatgctaaacagcttatgcaaataaataagcttttatctattattcataagtttgtcaatgtggtttat 2878702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 398
Target Start/End: Original strand, 29657965 - 29658026
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    |||||||||| |||||||||||||||||||||||||| |||||| || ||||| ||||||||    
T  29657965 gtttggattaggcttattttgagcttatgcaaaacaacttatgcaaaaaaataagcttttat 29658026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 430
Target Start/End: Complemental strand, 7364427 - 7364335
Alignment:
Q  338 tttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||| ||||||||||||||||||| ||||||  | |||| || ||||| |||| ||||| ||||| ||||||||||| | |||||||||    
T  7364427 tttggattgagcttattttgagcttatgtaaaacagctgatgcaaaaaaataagcttctatttattattcataagcttgttaaggtagtttat 7364335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 431
Target Start/End: Complemental strand, 7565391 - 7565292
Alignment:
Q  335 ctgtttggattaagcttatttt-gagcttatgcaaaacaatttatgcgaataaatatgcttttat---ttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||||||  |||||||| ||||| ||||||||||| | |||| |||||||||||||||||   || ||||||||||||||||| | |||||||||    
T  7565391 ctgtttggattac-cttattttagagctaatgcaaaacaactgatgcaaataaatatgcttttatgtattattatttataagcttgttaacgtagtttat 7565293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 430
Target Start/End: Complemental strand, 1372096 - 1372019
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||||||||||||| ||||||  ||||||||  ||||||| | ||||||||||||||||  |||| ||||||    
T  1372096 ttttgagcttatgcaaaacagtttatgtaaataaatacacttttatgtattatttataagcttgtaaatgtggtttat 1372019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 398
Target Start/End: Original strand, 29418650 - 29418723
Alignment:
Q  325 gtttaaggctctgtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    ||||||||| || |||||||| ||||||||||||||||||| |||| | ||||||| |||||||| | ||||||    
T  29418650 gtttaaggccctatttggattgagcttattttgagcttatgaaaaaaagtttatgcaaataaataagtttttat 29418723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 430
Target Start/End: Complemental strand, 29922292 - 29922215
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||||||||||||| ||||||| |||||||| | |||||| | ||||| ||||||||||  | |||||||||    
T  29922292 ttttgagcttatgcaaaacagtttatgcaaataaataagtttttatgtattattcataagcttgtcaaggtagtttat 29922215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 375 - 430
Target Start/End: Complemental strand, 13625602 - 13625547
Alignment:
Q  375 ttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||| ||||||||||||||||||| ||||| ||||||||||| | |||||||||    
T  13625602 ttatgcaaataaatatgcttttatttattattcataagcttgttgaggtagtttat 13625547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 430
Target Start/End: Original strand, 22573634 - 22573713
Alignment:
Q  351 tattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||||||||||||||||| |||||| |||||||  | |||| | | ||||||||||| ||||  |||||||||||    
T  22573634 tattttgagcttatgcaaaacaacttatgcaaataaatgagtttttttgtattatttataagtttgtaaatgtagtttat 22573713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 418
Target Start/End: Original strand, 26002955 - 26003045
Alignment:
Q  328 taaggctctgtttggattaagcttatttt-gagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtt 418  Q
    ||||| || ||||||||||| |||||||| |||||||| ||||||| ||||||| |||||||| | |||||| | ||||||||||| |||||    
T  26002955 taagggtccgtttggattaa-cttattttagagcttatacaaaacagtttatgcaaataaataagtttttatgtattatttataagtttgtt 26003045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 417
Target Start/End: Complemental strand, 10537320 - 10537258
Alignment:
Q  355 ttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgt 417  Q
    ||||||||||| ||||||  |||||| |||||||| |||||||| | ||||||||||||||||    
T  10537320 ttgagcttatgtaaaacagcttatgcaaataaataagcttttatgtattatttataagcttgt 10537258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 417
Target Start/End: Original strand, 11991294 - 11991352
Alignment:
Q  359 gcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgt 417  Q
    ||||||||||||||| |||||  |||||||| |||||||| | ||||||||||||||||    
T  11991294 gcttatgcaaaacaacttatgtaaataaataagcttttatgtattatttataagcttgt 11991352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 430
Target Start/End: Complemental strand, 22202048 - 22201962
Alignment:
Q  345 taagcttatttt-gagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||||| ||||||||||||||||  |||||  |||||||| |||||||| | ||||| ||||||||||  | |||||||||    
T  22202048 taagcttatttttgagcttatgcaaaacagcttatgtaaataaataagcttttatgtattattcataagcttgtcaaggtagtttat 22201962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 428
Target Start/End: Original strand, 9477284 - 9477362
Alignment:
Q  347 agcttatttt-gagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagttt 428  Q
    |||||||||| ||||||||||||| ||| |||||    ||||||||||||||| | |||||||||| |||||| |||||||||    
T  9477284 agcttattttagagcttatgcaaagcaacttatg----taaatatgcttttatgtattatttataaacttgttaatgtagttt 9477362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 400
Target Start/End: Complemental strand, 26003175 - 26003110
Alignment:
Q  335 ctgtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttattt 400  Q
    ||||||||||| ||||||||||||||||||| |||| || |||||  |||||||| | ||||||||    
T  26003175 ctgtttggattgagcttattttgagcttatgaaaaataacttatgtaaataaataagtttttattt 26003110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 1473339 - 1473403
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgt 417  Q
    |||||||||||| || ||||| |||||| |||||||| |||||||| | ||||| ||||||||||    
T  1473339 ttttgagcttatacagaacaacttatgcaaataaataagcttttatgtattattcataagcttgt 1473403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 29659238 - 29659175
Alignment:
Q  335 ctgtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    ||||||||||| ||||||||||||||||||| |||| |  |||||| |||||||| | ||||||    
T  29659238 ctgtttggattgagcttattttgagcttatgaaaaagagcttatgcaaataaataagtttttat 29659175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 409
Target Start/End: Original strand, 35078704 - 35078771
Alignment:
Q  342 gattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttat 409  Q
    |||||| |||||||||| |||||||||||||| |||| | |||||||| ||| |||| | ||||||||    
T  35078704 gattaaacttattttgaacttatgcaaaacaacttatacaaataaataagctattatgtattatttat 35078771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 389
Target Start/End: Complemental strand, 43010778 - 43010723
Alignment:
Q  334 tctgtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaata 389  Q
    |||||||||||||  ||||||||||| ||||||||||||| ||| || ||||||||    
T  43010778 tctgtttggattagacttattttgagtttatgcaaaacaacttacgcaaataaata 43010723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 411
Target Start/End: Original strand, 17128261 - 17128319
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataa 411  Q
    ||||||||||||||||||||  |||||| |||||||| |||||||| | ||||| ||||    
T  17128261 ttttgagcttatgcaaaacagcttatgcaaataaataagcttttatgtattattcataa 17128319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 414
Target Start/End: Complemental strand, 33757264 - 33757187
Alignment:
Q  336 tgtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagct 414  Q
    ||||||| || |||||||||||||| |||| ||||||| |||||  |||| ||| |||||||||| | |||||||||||    
T  33757264 tgtttggtttgagcttattttgagcatatgaaaaacaacttatgtaaatatataagcttttattt-taatttataagct 33757187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 32964521 - 32964460
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    ||||||| || |||| |||||||||||||||||||||  ||| | |||||||| ||||||||    
T  32964521 gtttggaataggcttgttttgagcttatgcaaaacaacgtattcaaataaataagcttttat 32964460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 398
Target Start/End: Original strand, 41059715 - 41059760
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    ||||||||||||| |||||| ||||||| |||||||| ||||||||    
T  41059715 ttttgagcttatgaaaaacagtttatgcaaataaataagcttttat 41059760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 398
Target Start/End: Original strand, 41125687 - 41125732
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    ||||||||||||||||||||| |||||| |||||| | ||||||||    
T  41125687 ttttgagcttatgcaaaacaacttatgcaaataaacaggcttttat 41125732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 430
Target Start/End: Original strand, 12467228 - 12467324
Alignment:
Q  334 tctgtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||||||||  |  ||||||| |||| ||||| |  |||||| |||||||| |||||||| | ||||| ||||||||||  | |||||||||    
T  12467228 tctgtttggattaaattatttttgagtttattcaaaaaatgttatgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttat 12467324  T

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Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 398
Target Start/End: Original strand, 40152787 - 40152847
Alignment:
Q  338 tttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    |||||||| |||||||||||| |||||| ||||||  |||||| ||||||||  |||||||    
T  40152787 tttggattgagcttattttgaacttatgaaaaacatcttatgcaaataaataatcttttat 40152847  T

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Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 42852005 - 42852069
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgt 417  Q
    ||||| ||||||||||||||  |||| | |||||||| |||||||| | ||||| ||||||||||    
T  42852005 ttttgggcttatgcaaaacagcttattcaaataaataagcttttatgtattattcataagcttgt 42852069  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 353 - 430
Target Start/End: Original strand, 29877622 - 29877699
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| | ||||| ||||||||| | | |||||||||    
T  29877622 ttttgagcttatgcaaaacaatttatgcaaataaataagcttttatgtattattcataagcttgctaaggtagtttat 29877699  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 411
Target Start/End: Original strand, 36298298 - 36298372
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataa 411  Q
    ||||| ||| || ||||||| | ||||||||||| ||||||| || |||||||||||||||||||||||||||||    
T  36298298 gtttgaattgagtttattttaaacttatgcaaaataatttatacgtataaatatgcttttatttgttatttataa 36298372  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 430
Target Start/End: Complemental strand, 27368270 - 27368178
Alignment:
Q  338 tttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||| ||||||||||| |||||| ||||||| |||||| |||||||| |||||||| | ||||| ||||| ||||  |||||| ||||    
T  27368270 tttggattaggcttattttgaacttatgtaaaacaacttatgcaaataaataagcttttatatattattcataagtttgtcaatgtagcttat 27368178  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 430
Target Start/End: Complemental strand, 213048 - 212974
Alignment:
Q  355 ttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||||||||||||| |||||| |||||||| | |||||||| ||||| ||||||||||| | |||||||||    
T  213048 ttgagcttatgcaaaacaacttatgcaaataaataag-ttttatttattattcataagcttgttaaggtagtttat 212974  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 406
Target Start/End: Complemental strand, 7206705 - 7206636
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatt 406  Q
    ||||||||| ||||||||||||||||||||| ||||  |||||| ||| |||| |||||||||| |||||    
T  7206705 gtttggattgagcttattttgagcttatgcagaacagcttatgcaaatgaataagcttttatttattatt 7206636  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 430
Target Start/End: Complemental strand, 18424380 - 18424303
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||||||||||||||||||| | |||||||| |||||||| | ||||| |||| |||||  | |||||||||    
T  18424380 ttttgagcttatgcaaaacaatttatacaaataaataagcttttatgtattattcataaacttgtgaaggtagtttat 18424303  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 430
Target Start/End: Complemental strand, 43699586 - 43699509
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||||||| ||||||| |||| | |||||||| |||||||| | ||||| ||||||||||  |||||||||||    
T  43699586 ttttgagcttatgaaaaacaacttatacaaataaataagcttttatgtcttattcataagcttgtcaatgtagtttat 43699509  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 430
Target Start/End: Original strand, 41228888 - 41228963
Alignment:
Q  355 ttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||||||||||||  ||||||   |||||| |||||||||| ||||| ||||||||||| | |||||||||    
T  41228888 ttgagcttatgcaaaacagcttatgcaggtaaataggcttttatttattattcataagcttgttaaggtagtttat 41228963  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 417
Target Start/End: Complemental strand, 29996742 - 29996678
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgt 417  Q
    ||||||| || ||||||||||||||||| |||||||| |||||||| | ||||| ||||| ||||    
T  29996742 ttttgagtttttgcaaaacaatttatgcaaataaataagcttttatatattattcataagtttgt 29996678  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 398
Target Start/End: Original strand, 18630807 - 18630866
Alignment:
Q  339 ttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    ||||||| ||||||||||||||||||| |||| |  |||||| |||||||| ||||||||    
T  18630807 ttggattgagcttattttgagcttatgaaaaatagcttatgcaaataaataagcttttat 18630866  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 430
Target Start/End: Complemental strand, 46704370 - 46704296
Alignment:
Q  355 ttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    ||||||||||| ||||||| |||||| ||| |||| |||||||||| ||||| || |||||||| | |||||||||    
T  46704370 ttgagcttatgtaaaacaacttatgcaaat-aataagcttttatttattattcatgagcttgttaaggtagtttat 46704296  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 398
Target Start/End: Original strand, 9319034 - 9319084
Alignment:
Q  348 gcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    |||||||||||||||||||||||||| |||| | |||||||| | ||||||    
T  9319034 gcttattttgagcttatgcaaaacaacttatacaaataaataagtttttat 9319084  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 375
Target Start/End: Complemental strand, 24102036 - 24101998
Alignment:
Q  337 gtttggattaagcttattttgagcttatgcaaaacaatt 375  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  24102036 gtttggattaggattattttgagcttatgcaaaacaatt 24101998  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 430
Target Start/End: Original strand, 23297421 - 23297498
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagtttat 430  Q
    |||||||||||||||||| |  |||||| |||||||| |||||||| | ||||| ||||| ||||  | |||||||||    
T  23297421 ttttgagcttatgcaaaatagcttatgcaaataaataagcttttatgtattattcataagtttgtcaaggtagtttat 23297498  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 39117024 - 39116975
Alignment:
Q  349 cttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttat 398  Q
    ||||||||||||||||||||||||| |||||  | ||||| |||||||||    
T  39117024 cttattttgagcttatgcaaaacaacttatgtaactaaatctgcttttat 39116975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 417
Target Start/End: Complemental strand, 42611971 - 42611906
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttt-tatttgttatttataagcttgt 417  Q
    |||| |||||||||||||||| |||||| |||||||| ||||| ||| | ||||| ||||||||||    
T  42611971 tttttagcttatgcaaaacaacttatgcaaataaataagctttatatgtattattcataagcttgt 42611906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 400
Target Start/End: Original strand, 4603253 - 4603305
Alignment:
Q  348 gcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttttattt 400  Q
    |||||||||||||||||| |||| | ||||||  |||||||| ||||||||||    
T  4603253 gcttattttgagcttatgaaaaatattttatgtaaataaataagcttttattt 4603305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 429
Target Start/End: Complemental strand, 43415392 - 43415316
Alignment:
Q  353 ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataagcttgtttatgtagttta 429  Q
    ||||||||||| | ||||||| || ||| |||||||| | |||||| | ||||| ||||| ||||| ||||||||||    
T  43415392 ttttgagcttaagtaaaacaacttctgcaaataaataagtttttatgtattattcataaggttgttaatgtagttta 43415316  T

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Target: scaffold0332 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 14645 - 14714
Alignment:
Q  325 gtttaaggctctgtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaatatgcttt 395  Q
    |||||||| || |||||||||| ||||||| |||||||||||||||| | |||||| |||||||| |||||    
T  14645 gtttaagggtccgtttggattaggcttattatgagcttatgcaaaac-acttatgcaaataaataagcttt 14714  T

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Target: scaffold0191 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 396
Target Start/End: Complemental strand, 31306 - 31245
Alignment:
Q  337 gtttggattaagcttatttt--gagcttatgcaaaacaatttatgcgaataaatatgctttt 396  Q
    |||||||||| |||||||||  ||||||||| ||||||| |||||| |||||||| ||||||    
T  31306 gtttggattaggcttattttttgagcttatgtaaaacaacttatgcaaataaataagctttt 31245  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 178680 - 178626
Alignment:
Q  335 ctgtttggattaagcttattttgagcttatgcaaaacaatttatgcgaataaata 389  Q
    |||||||| |||||||||||||||||||||| |||| | ||||||  ||||||||    
T  178680 ctgtttgggttaagcttattttgagcttatgaaaaatagtttatgtaaataaata 178626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 412
Target Start/End: Original strand, 178458 - 178542
Alignment:
Q  328 taaggctctgtttggattaagctta-ttttgagcttatgcaaaacaatttatgcgaataaatatgcttttatttgttatttataag 412  Q
    ||||| || ||||||||||| |||| |||||| ||||| | |||||| |||||| |||||||| |||||||| | |||||||||||    
T  178458 taagggtccgtttggattaa-cttatttttgaacttatactaaacaacttatgcaaataaataagcttttatgtattatttataag 178542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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