View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13824_low_11 (Length: 445)

Name: NF13824_low_11
Description: NF13824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13824_low_11
NF13824_low_11
[»] chr2 (32 HSPs)
chr2 (15-426)||(10348391-10348802)
chr2 (8-197)||(10372699-10372888)
chr2 (40-322)||(9283349-9283628)
chr2 (40-268)||(10336560-10336782)
chr2 (1-267)||(7114786-7115047)
chr2 (8-197)||(10353962-10354149)
chr2 (85-308)||(9329305-9329528)
chr2 (43-195)||(9316844-9316999)
chr2 (39-195)||(9060269-9060428)
chr2 (79-299)||(12018128-12018345)
chr2 (82-298)||(9275241-9275455)
chr2 (83-257)||(12011811-12011982)
chr2 (83-268)||(12005383-12005565)
chr2 (85-197)||(9321808-9321920)
chr2 (64-195)||(9357935-9358066)
chr2 (83-268)||(11986743-11986925)
chr2 (80-197)||(9292745-9292862)
chr2 (85-197)||(8572722-8572833)
chr2 (85-213)||(7612697-7612825)
chr2 (85-269)||(17565334-17565514)
chr2 (358-426)||(9357789-9357857)
chr2 (115-164)||(9365445-9365494)
chr2 (118-193)||(14551140-14551215)
chr2 (359-426)||(10353730-10353797)
chr2 (360-397)||(7115107-7115144)
chr2 (92-164)||(8578752-8578824)
chr2 (359-392)||(8572959-8572992)
chr2 (359-396)||(9321615-9321652)
chr2 (359-394)||(9283644-9283679)
chr2 (363-394)||(10372502-10372533)
chr2 (359-397)||(9292566-9292604)
chr2 (345-423)||(9316640-9316718)
[»] chr4 (3 HSPs)
chr4 (8-197)||(26575696-26575880)
chr4 (118-219)||(561965-562066)
chr4 (359-422)||(26575486-26575549)
[»] scaffold0667 (2 HSPs)
scaffold0667 (40-197)||(5276-5436)
scaffold0667 (359-390)||(5122-5153)
[»] chr3 (3 HSPs)
chr3 (64-195)||(37463341-37463472)
chr3 (359-426)||(37463107-37463174)
chr3 (83-268)||(39428633-39428809)
[»] chr8 (1 HSPs)
chr8 (40-188)||(41965897-41966045)
[»] chr1 (4 HSPs)
chr1 (100-197)||(29452586-29452683)
chr1 (100-188)||(29467060-29467148)
chr1 (64-188)||(29424040-29424164)
chr1 (64-188)||(29442558-29442682)
[»] chr5 (1 HSPs)
chr5 (83-193)||(36225571-36225681)


Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 15 - 426
Target Start/End: Complemental strand, 10348802 - 10348391
Alignment:
Q  15 ctaaaccctagcagaaccttccttctccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatca 114  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10348802 ctaaaccctagcagaaccttccttctcattccttggaatggcggctgaacttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatca 10348703  T
Q  115 cttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattctctaaatttcaacctca 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10348702 cttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattcatcaaccttcacctaaaaaattctctaaatttcaacctca 10348603  T
Q  215 tcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaaccaaatctatcattccactcaaccatcccttcaccaccaacatcgatcc 314  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  10348602 tcctccgtcacaacaccaccgatttctaccaactccatttccctaacctaaccaaatctatcattccactcaactatcccttcactaccaacatcgatcc 10348503  T
Q  315 ttccacgcggagccccaccgacctcctccgtaacagtaaaatgtctcttatcggttcatgtaacggcctcctcgccatctccactggggtaatcgttttc 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10348502 ttccacgcggagccccaccgacctcctccgtaacagtaaaatgtctcttatcggttcatgtaacggcctcctcgccatctccacaggggtaatcgttttc 10348403  T
Q  415 acgcatcctaac 426  Q
    ||||||||||||    
T  10348402 acgcatcctaac 10348391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 8 - 197
Target Start/End: Complemental strand, 10372888 - 10372699
Alignment:
Q  8 aaaaaccctaaaccctagcagaaccttccttctccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggt 107  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||    
T  10372888 aaaaaccctaagccctagcagaaccttccttctccttctttgcaatggcggctgaacttccgcctgatattctcgccgaagtcttctcccgcttaccggt 10372789  T
Q  108 aaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattc 197  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| | |||||||||||||||||||||  |||||||    
T  10372788 aaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatcaaccttcacctccaaaattc 10372699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 40 - 322
Target Start/End: Original strand, 9283349 - 9283628
Alignment:
Q  40 tccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaa 139  Q
    ||||||||| |||||||| | || ||||||||||| || || ||||||||||||||| ||||||| || |||||||| ||||||||||||||||| || |    
T  9283349 tccttccttccaatggcgtccgatcttccgccggacatacttgccgaaatcttctcctgcttaccagttaaatcactactccgattccgatcaacttcta 9283448  T
Q  140 aatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgattt 239  Q
    ||||||||  |||| |||| ||||| | ||||||||||||||||||||| |||| ||| || || ||||| ||||||||||||||||| ||||   || |    
T  9283449 aatcacttcgatccctaatagattctcacaaattcatcaaccttcacctcaaaagttccctcaacttcaaactcatcctccgtcacaagacca---atct 9283545  T
Q  240 ctaccaactccatttcccttacctaaccaaatctatcattccactcaaccatcccttcaccaccaacatcgatccttccacgc 322  Q
    |||||||||| |||||||| ||||||||||||| || || || ||||||||||| |||||||||||||||||||||| |||||    
T  9283546 ctaccaactcgatttccctaacctaaccaaatccataataccgctcaaccatcctttcaccaccaacatcgatcctttcacgc 9283628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 40 - 268
Target Start/End: Complemental strand, 10336782 - 10336560
Alignment:
Q  40 tccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaa 139  Q
    ||||||||| ||||||||| |   ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10336782 tccttccttacaatggcggat---cttccgccggaaattctctccgaaatcttctcccgtttaccggtaaaatcacttctccgattccgatcaacctcaa 10336686  T
Q  140 aatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgattt 239  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||  ||||||| || ||||| |||||||||||||||| |||    |||||  |    
T  10336685 aatcacttaaatccttaatcgattctcacaaattcatcaaccttcaccttcaaaattccctcaattttaacctcatcctccgtcgcaa---aaccgacct 10336589  T
Q  240 ctaccaactccatttcccttacctaacca 268  Q
    |||||| |||||||||||| |||||||||    
T  10336588 ctaccacctccatttccctaacctaacca 10336560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 7114786 - 7115047
Alignment:
Q  1 agaaacaaaaaaccctaaaccctagca-gaaccttccttctccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgc 99  Q
    ||||||||||||||||||||||||| | ||||||| |  ||||||||    |||||||||||| ||||||||||| || ||  ||||||||||||| |||    
T  7114786 agaaacaaaaaaccctaaaccctagaacgaaccttgc--ctccttcc----aatggcggctgatcttccgccggaaatactatccgaaatcttctctcgc 7114879  T
Q  100 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattctc 199  Q
     |||| |||  ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| || ||||||||      
T  7114880 ctaccagtacgatcacttcttcgattccgatcaacttcaaaatcacttaaatccttaatcgattcccacaaattcatcaaccttcatcttaaaaattcct 7114979  T
Q  200 taaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaacc 267  Q
    | ||||||||| |||||||||||||||| | || |||| |||||||||||||||||||| ||||||||    
T  7114980 tcaatttcaacttcatcctccgtcacaagaacaacgatctctaccaactccatttccctaacctaacc 7115047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 8 - 197
Target Start/End: Complemental strand, 10354149 - 10353962
Alignment:
Q  8 aaaaaccctaaaccctagcagaaccttccttctccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggt 107  Q
    |||||||||||||||||||||||||||| |||  ||||||| ||||||||||||| ||||| ||||| |||||| |||||||| | ||||||||||||||    
T  10354149 aaaaaccctaaaccctagcagaaccttcattc--cttccttacaatggcggctgaacttccaccggaaattctcaccgaaatcctttcccgcttaccggt 10354052  T
Q  108 aaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattc 197  Q
    || |||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||   ||||||||||||||||||||| | ||||||    
T  10354051 aatatcacttctcagattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaaccttcacctcagaaattc 10353962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 85 - 308
Target Start/End: Complemental strand, 9329528 - 9329305
Alignment:
Q  85 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 184  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| | ||| ||||  |||||||    
T  9329528 gaaatcctctcccgcttaccggtaaaatcacttctccgattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttc 9329429  T
Q  185 acct---aaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaaccaaatctatcattcc 281  Q
    ||||   ||| ||||| || |||||||||||||||||   |||   ||  |||||| ||||||||||| || | ||| | ||||||||||| || |||||    
T  9329428 acctcaaaaataattccctcaatttcaacctcatcct---tcagctcaataccgatctctaccaactcgatcttcctaatctaaccaaatccatgattcc 9329332  T
Q  282 actcaaccatcccttcaccaccaacat 308  Q
    |||||||||||| |||| |||||||||    
T  9329331 actcaaccatcctttcagcaccaacat 9329305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 43 - 195
Target Start/End: Complemental strand, 9316999 - 9316844
Alignment:
Q  43 ttccttgcaatggcggctgag---cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaa 139  Q
    |||||| |||||||||||||    ||||||||||| || ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  9316999 ttccttccaatggcggctgacggtcttccgccggaaatactcgccgaaatcttctcccacttaccagtaaaatcacttctccgattccgatcaacttcaa 9316900  T
Q  140 aatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaat 195  Q
    ||||||||||||| ||||| ||||| | ||| ||||||||||||||||| ||||||    
T  9316899 aatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaat 9316844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 39 - 195
Target Start/End: Original strand, 9060269 - 9060428
Alignment:
Q  39 ctccttccttgcaatggcggctgag---cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacc 135  Q
    |||||||||| |||||||||||||    ||||||||||| || || ||||||||||||||||||||||||||  |||||||||||||||||||||||||     
T  9060269 ctccttccttccaatggcggctgatgttcttccgccggaaatacttgccgaaatcttctcccgcttaccggttcaatcacttctccgattccgatcaact 9060368  T
Q  136 tcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaat 195  Q
    ||||||||||||||||||||||||||||| | ||| ||||  |||||| |||| ||||||    
T  9060369 tcaaaatcacttaaatccttaatcgattctcacaacttcactaacctttacctcaaaaat 9060428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 79 - 299
Target Start/End: Original strand, 12018128 - 12018345
Alignment:
Q  79 ctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatca 178  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||| | ||| |||| ||    
T  12018128 ctcgccgaaatcttctcccgcttaccagtaaaatcacttcttcgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcacca 12018227  T
Q  179 accttcacctaaaaaa---ttctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaaccaaatctat 275  Q
    | ||||| || |||||    || || |||||||||||||||||||||||| |   |||| || ||||||||||||||||||||  ||||||||   |  |    
T  12018228 atcttcaactcaaaaactcatccctcaatttcaacctcatcctccgtcacga---cacccatctctaccaactccatttccctaccctaacca---ccgt 12018321  T
Q  276 cattccactcaaccatcccttcac 299  Q
    ||| |||||||||||||| |||||    
T  12018322 catcccactcaaccatcctttcac 12018345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 82 - 298
Target Start/End: Complemental strand, 9275455 - 9275241
Alignment:
Q  82 gccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacc 181  Q
    ||||||||||||||||| ||||| ||| ||||||||||| |||||||||||| |||||||||||||||||| || || ||||| | ||| ||||||||||    
T  9275455 gccgaaatcttctcccggttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaacc 9275356  T
Q  182 ttcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaaccaaatctatcattcc 281  Q
    |||| || |||||||| || |||||||||||||| || |  ||||||||  || |  ||||| ||||| |||||||| ||||||||||||  || || |     
T  9275355 ttcatctcaaaaattccctcaatttcaacctcattcttcaacacaacac--ccaaactctacgaactcaatttccctaacctaaccaaattcataataca 9275258  T
Q  282 actcaaccatcccttca 298  Q
    |||||||||||| ||||    
T  9275257 actcaaccatcctttca 9275241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 83 - 257
Target Start/End: Original strand, 12011811 - 12011982
Alignment:
Q  83 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 182  Q
    |||||||||||||||||||||    | ||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| | ||| |||| ||| ||    
T  12011811 ccgaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatct 12011910  T
Q  183 tcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttccc 257  Q
    |||||| ||||| ||||  || ||||||||||||||||| ||||||||||   || |||| ||||||||||||||    
T  12011911 tcacctcaaaaactctcacaacttcaacctcatcctccgccacaacacca---atctctatcaactccatttccc 12011982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 83 - 268
Target Start/End: Original strand, 12005383 - 12005565
Alignment:
Q  83 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 182  Q
    ||||||||||||||||||||||   | ||||||||||||||||||| ||||| ||| |||| ||||||||| |||||||||| | ||| |||| ||||||    
T  12005383 ccgaaatcttctcccgcttacctccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataatcgattctcacaacttcaccaacct 12005482  T
Q  183 tcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaacca 268  Q
    ||| |||||||||||||| ||| ||||||| |||||| | ||||| ||||   || ||| ||| |||||||||||| | |||||||    
T  12005483 tcatctaaaaaattctctcaatctcaaccttatcctcggccacaaaacca---atctcttccacctccatttccctaatctaacca 12005565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 85 - 197
Target Start/End: Complemental strand, 9321920 - 9321808
Alignment:
Q  85 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 184  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||| | | | |||||||||||||    
T  9321920 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttc 9321821  T
Q  185 acctaaaaaattc 197  Q
    | || ||||||||    
T  9321820 atctcaaaaattc 9321808  T

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Target: chr2; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 9358066 - 9357935
Alignment:
Q  64 cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 163  Q
    ||||||||||| || |||||| |||| || | ||||||||| ||||||||||||||||| ||  ||||||| ||||||||||||||||||||||||||||    
T  9358066 cttccgccggaaatactcgccaaaattttgttccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgatt 9357967  T
Q  164 cactcaaattcatcaaccttcacctaaaaaat 195  Q
    | | ||| ||||| ||||||||||| ||||||    
T  9357966 ctcacaacttcataaaccttcacctcaaaaat 9357935  T

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Target: chr2; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 83 - 268
Target Start/End: Original strand, 11986743 - 11986925
Alignment:
Q  83 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 182  Q
    |||||||||||||||||||||    | ||||||||||||||||||| ||||| ||| |||| ||||||||| |||| ||||| | ||| |||| ||| ||    
T  11986743 ccgaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataattgattctcacaacttcaccaatct 11986842  T
Q  183 tcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaacca 268  Q
    |||||| | ||| |||   || ||||||||||||||||||||||||||||   || |||| ||||||||||||||| |||||||||    
T  11986843 tcacctcagaaactctgacaacttcaacctcatcctccgtcacaacacca---atctctatcaactccatttccctaacctaacca 11986925  T

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Target: chr2; HSP #17
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 9292862 - 9292745
Alignment:
Q  80 tcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaa 179  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||| | ||  ||||  ||    
T  9292862 tcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaa 9292763  T
Q  180 ccttcacctaaaaaattc 197  Q
    ||||||||| ||||||||    
T  9292762 ccttcacctcaaaaattc 9292745  T

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Target: chr2; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 85 - 197
Target Start/End: Original strand, 8572722 - 8572833
Alignment:
Q  85 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 184  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||  |||||||||| | ||| |||| ||||||||    
T  8572722 gaaatcttctcccgcataccagtaaa-tcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttc 8572820  T
Q  185 acctaaaaaattc 197  Q
    |||| ||||||||    
T  8572821 acctcaaaaattc 8572833  T

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Target: chr2; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 85 - 213
Target Start/End: Complemental strand, 7612825 - 7612697
Alignment:
Q  85 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 184  Q
    |||||| |||| |||||||||||| || | || ||||||||||||||||  || ||||| |||||||||||||| ||||| | ||| ||||  |||||||    
T  7612825 gaaatcctctctcgcttaccggtacaaaccctcctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttc 7612726  T
Q  185 acctaaaaaattctctaaatttcaacctc 213  Q
    |||| ||||| ||| ||||||||||||||    
T  7612725 acctcaaaaactctttaaatttcaacctc 7612697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 85 - 269
Target Start/End: Original strand, 17565334 - 17565514
Alignment:
Q  85 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 184  Q
    |||||| |||| |||||||| ||| |||| || |||||| |||||||||| || |||||||||||||  ||||| ||||| |  || |||| ||||||||    
T  17565334 gaaatcctctctcgcttaccagtacaatccctcctccgactccgatcaacgtcgaaatcacttaaatttttaattgattcccataacttcaccaaccttc 17565433  T
Q  185 acctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaaccaa 269  Q
    |||  ||||| ||| |||||||||||||||| ||||| |||||| |||   | ||||||||| |  |||||||| ||||||||||    
T  17565434 acc-caaaaactctttaaatttcaacctcattctccgccacaactcca---aattctaccaagttgatttccctaacctaaccaa 17565514  T

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Target: chr2; HSP #21
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 9357857 - 9357789
Alignment:
Q  358 tctcttatcggttcatgtaacggcctcctcgccatctccactggggtaatcgttttcacgcatcctaac 426  Q
    |||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||| ||||||||||    
T  9357857 tctcttatcggttcatgtaacggcctcctcgccatctccaatggcgaaatcgctttcaggcatcctaac 9357789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 9365494 - 9365445
Alignment:
Q  115 cttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattc 164  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9365494 cttctccgattccgatcaacctcaaaatcacttaaatccataatcgattc 9365445  T

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Target: chr2; HSP #23
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 14551215 - 14551140
Alignment:
Q  118 ctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaa 193  Q
    |||| |||||||||||| |||||||||||| ||||| |||||||||| | ||| |||||||| |||||||||||||    
T  14551215 ctccaattccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctaaaaa 14551140  T

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Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 426
Target Start/End: Complemental strand, 10353797 - 10353730
Alignment:
Q  359 ctcttatcggttcatgtaacggcctcctcgccatctccactggggtaatcgttttcacgcatcctaac 426  Q
    |||||||||||||||||||||||||||||||||| |||   || ||||| | ||||||||||||||||    
T  10353797 ctcttatcggttcatgtaacggcctcctcgccatgtcccacggcgtaatagctttcacgcatcctaac 10353730  T

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Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 360 - 397
Target Start/End: Original strand, 7115107 - 7115144
Alignment:
Q  360 tcttatcggttcatgtaacggcctcctcgccatctcca 397  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7115107 tcttatcggttcatgtaacggcctcctcgccatctcca 7115144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 8578752 - 8578824
Alignment:
Q  92 tctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattc 164  Q
    ||||||||||||||||| |||| |||||||||||||||||||  || |||||||||  |||||| || |||||    
T  8578752 tctcccgcttaccggtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattc 8578824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 392
Target Start/End: Original strand, 8572959 - 8572992
Alignment:
Q  359 ctcttatcggttcatgtaacggcctcctcgccat 392  Q
    ||||||||||||||||||||||||||||||||||    
T  8572959 ctcttatcggttcatgtaacggcctcctcgccat 8572992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 9321652 - 9321615
Alignment:
Q  359 ctcttatcggttcatgtaacggcctcctcgccatctcc 396  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  9321652 ctcttatcggttcctgtaacggcctcctcgccatctcc 9321615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 394
Target Start/End: Original strand, 9283644 - 9283679
Alignment:
Q  359 ctcttatcggttcatgtaacggcctcctcgccatct 394  Q
    ||||||| ||||||||||||||||||||||||||||    
T  9283644 ctcttattggttcatgtaacggcctcctcgccatct 9283679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 394
Target Start/End: Complemental strand, 10372533 - 10372502
Alignment:
Q  363 tatcggttcatgtaacggcctcctcgccatct 394  Q
    ||||||||||||||||||||||||||||||||    
T  10372533 tatcggttcatgtaacggcctcctcgccatct 10372502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 397
Target Start/End: Complemental strand, 9292604 - 9292566
Alignment:
Q  359 ctcttatcggttcatgtaacggcctcctcgccatctcca 397  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  9292604 ctcttattggttcatgtaacggcctcctcgccatttcca 9292566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 423
Target Start/End: Complemental strand, 9316718 - 9316640
Alignment:
Q  345 taacagtaaaatgtctcttatcggttcatgtaacggcctcctcgccatctccactggggtaatcgttttcacgcatcct 423  Q
    |||||| | |||| ||||| ||||||||||||||||||| |||||||| |||| |||   ||||| ||||| |||||||    
T  9316718 taacagcataatggctcttctcggttcatgtaacggccttctcgccatttccaatggtcaaatcgctttcatgcatcct 9316640  T

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Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 8 - 197
Target Start/End: Complemental strand, 26575880 - 26575696
Alignment:
Q  8 aaaaaccctaaaccctagcagaaccttccttctccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggt 107  Q
    ||||||||||||||||||   ||||||| |||  ||||||| ||||||||||||| ||||| ||||| |||||| |||||||||||||||| ||||||||    
T  26575880 aaaaaccctaaaccctag---aaccttcattc--cttccttacaatggcggctgaacttccaccggaaattctcaccgaaatcttctcccgtttaccggt 26575786  T
Q  108 aaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattc 197  Q
    || |||||||||||||||||||||||| |||||||||||||||| ||||||||||||   ||||||||||||||||||||| | ||||||    
T  26575785 aatatcacttctccgattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaaccttcacctcagaaattc 26575696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 562066 - 561965
Alignment:
Q  118 ctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattctctaaatttcaacctcatcc 217  Q
    ||||||||||||| ||  |||||||  ||||||||| |||||||||| | ||| ||||  ||||||||||| ||||| || || ||||| ||||||||||    
T  562066 ctccgattccgattaagttcaaaatggcttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaactccctcaattttaacctcatcc 561967  T
Q  218 tc 219  Q
    ||    
T  561966 tc 561965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 422
Target Start/End: Complemental strand, 26575549 - 26575486
Alignment:
Q  359 ctcttatcggttcatgtaacggcctcctcgccatctccactggggtaatcgttttcacgcatcc 422  Q
    |||||||||||||||||||||||||||||||||| |||   || ||||| | ||||||||||||    
T  26575549 ctcttatcggttcatgtaacggcctcctcgccatgtcccacggcgtaatggctttcacgcatcc 26575486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 40 - 197
Target Start/End: Complemental strand, 5436 - 5276
Alignment:
Q  40 tccttccttgcaatggcggctgagc---ttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacct 136  Q
    ||||||||| |||||||| |||| |   |||||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5436 tccttccttccaatggcgtctgaccgccttccgccggacacactcgcagaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaactt 5337  T
Q  137 caaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattc 197  Q
    ||||||||||||||||| |||||||||| | ||| ||||||||||||||||  ||||||||    
T  5336 caaaatcacttaaatccataatcgattctcacaacttcatcaaccttcaccgcaaaaattc 5276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 390
Target Start/End: Complemental strand, 5153 - 5122
Alignment:
Q  359 ctcttatcggttcatgtaacggcctcctcgcc 390  Q
    ||||||||||||||||||||||||||||||||    
T  5153 ctcttatcggttcatgtaacggcctcctcgcc 5122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 37463472 - 37463341
Alignment:
Q  64 cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 163  Q
    ||||||||||| || |||||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  37463472 cttccgccggaaatactcgccgaaatcctctcccgtttaccagtagaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgatt 37463373  T
Q  164 cactcaaattcatcaaccttcacctaaaaaat 195  Q
    | | ||| |||||||||||||| || ||||||    
T  37463372 ctcacaacttcatcaaccttcatctcaaaaat 37463341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 359 - 426
Target Start/End: Complemental strand, 37463174 - 37463107
Alignment:
Q  359 ctcttatcggttcatgtaacggcctcctcgccatctccactggggtaatcgttttcacgcatcctaac 426  Q
    ||||||||||||||||||||||||||||||| ||||||| |||   ||||| ||||||||||||||||    
T  37463174 ctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaac 37463107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 83 - 268
Target Start/End: Complemental strand, 39428809 - 39428633
Alignment:
Q  83 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 182  Q
    |||||||| ||||||||||||||||  |||| || |||| |||||||||||| ||||||| | |||||||||||||| |||| | ||| ||||     ||    
T  39428809 ccgaaatcctctcccgcttaccggtgcaatccctcctccaattccgatcaacttcaaaatgagttaaatccttaatc-attcccacaacttca-----ct 39428716  T
Q  183 tcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaacca 268  Q
    |||||| ||||| |  || || |||||||||||||| || ||||||  ||   || ||||||||||| |||||||| |||||||||    
T  39428715 tcacctcaaaaactacctcaacttcaacctcatccttcgccacaactgca---atctctaccaactcgatttccctaacctaacca 39428633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 40 - 188
Target Start/End: Original strand, 41965897 - 41966045
Alignment:
Q  40 tccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaa 139  Q
    ||||||||  ||||| ||| ||| || ||||| || || ||||| |||||||||||||  ||||||||||||||| |||||||||||||||||||||| |    
T  41965897 tccttcctcacaatgacggttgatctaccgccagaaatactcgctgaaatcttctccctattaccggtaaaatcagttctccgattccgatcaacctcga 41965996  T
Q  140 aatcacttaaatccttaatcgattcactcaaattcatcaaccttcacct 188  Q
    ||||||||  ||||||||||||||| | ||| |||||||||||||||||    
T  41965997 aatcacttcgatccttaatcgattcccacaacttcatcaaccttcacct 41966045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 29452586 - 29452683
Alignment:
Q  100 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattc 197  Q
    ||||||||| |||| || ||||||||||| |||||||||||||||||| ||||| |||||||||| | ||| |||||||| ||||||||  |||||||    
T  29452586 ttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattc 29452683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 29467060 - 29467148
Alignment:
Q  100 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacct 188  Q
    ||||||||| |||| || ||||||||||| |||||||||||||||||| ||||| |||||||||| | ||| |||||||| ||||||||    
T  29467060 ttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacct 29467148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 188
Target Start/End: Complemental strand, 29424164 - 29424040
Alignment:
Q  64 cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 163  Q
    ||||||||||| || ||| ||| |||| |||| |  ||||||||| |||| || ||||||||||| |||||||||||||||||| ||||  |||||||||    
T  29424164 cttccgccggagatactcaccggaatcctctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatctctaatcgatt 29424065  T
Q  164 cactcaaattcatcaaccttcacct 188  Q
    | | ||  |||||||| ||||||||    
T  29424064 cccacagcttcatcaagcttcacct 29424040  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 188
Target Start/End: Original strand, 29442558 - 29442682
Alignment:
Q  64 cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 163  Q
    ||||||||||| || ||  ||| |||| |||| |  ||||||| | |||| || ||||||||||| ||||| || ||||||||| ||||| |||||||||    
T  29442558 cttccgccggagatacttaccggaatcctctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgatt 29442657  T
Q  164 cactcaaattcatcaaccttcacct 188  Q
    | |  || |||||||| ||||||||    
T  29442658 cccataacttcatcaaacttcacct 29442682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 36225681 - 36225571
Alignment:
Q  83 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 182  Q
    |||||||| ||||||||||||  ||  |||| || ||||||||||||||||| ||||||||||||||||| ||||||||||| | ||| ||||  || ||    
T  36225681 ccgaaatcctctcccgcttactagtgcaatccctcctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatct 36225582  T
Q  183 tcacctaaaaa 193  Q
    |||||| ||||    
T  36225581 tcacctcaaaa 36225571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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