View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13824_low_12 (Length: 444)

Name: NF13824_low_12
Description: NF13824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13824_low_12
NF13824_low_12
[»] chr2 (9 HSPs)
chr2 (20-431)||(5576485-5576894)
chr2 (91-329)||(5586954-5587192)
chr2 (83-350)||(5573403-5573669)
chr2 (90-352)||(5593165-5593429)
chr2 (82-323)||(12051689-12051934)
chr2 (89-192)||(5582835-5582938)
chr2 (240-329)||(12064683-12064772)
chr2 (240-350)||(12059272-12059381)
chr2 (292-352)||(5582733-5582793)
[»] chr8 (1 HSPs)
chr8 (156-323)||(36357884-36358051)
[»] chr3 (1 HSPs)
chr3 (158-318)||(7017550-7017710)


Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 20 - 431
Target Start/End: Complemental strand, 5576894 - 5576485
Alignment:
Q  20 tatattattgctcccgaaggatttggtagcttcattagttttcctgcttagatggcatgtgagatcaaaacatggttgatggttcttattcttatctttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5576894 tatattattgctcccgaaggatttggtagcttcattagttttcctgcttagatggcatgtgagatcaaaacatggttgatggttcttattcttatctttt 5576795  T
Q  120 ctgcaaactatttgcaacaatttgtcaatggaaaatcccaagtgccatgtctttttatctttggagattctttatctgatagtggaaacaataacaacct 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5576794 ctgcaaactatttgcaacaatttgtcaatggaaaatcccaagtgccatgtctttttatctttggagattctttatctgatagtggaaacaataacaacct 5576695  T
Q  220 tcccacctctgcaaaatctaattacaaaccttatggaatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaacttcaattgacataata 319  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5576694 tcccacctctgcaaaatctaattacaaaccttatggaattgacttcccgatgggcccaaccggaagatttaccaacggtcgaacttcaattgacataata 5576595  T
Q  320 agtagcattccgttcaacttatctatattatgattatgaaatctgattctctcnnnnnnnnngtaagagtaaactatactgattgaatctataagtgttt 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  5576594 agtagcattccgttcaacttatctatattatgattatgaaatctgattctctc--tttttttgtaagagtaaactatactgattgaatctataagtgttt 5576497  T
Q  420 ttcattattctt 431  Q
    ||||||||||||    
T  5576496 ttcattattctt 5576485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 91 - 329
Target Start/End: Complemental strand, 5587192 - 5586954
Alignment:
Q  91 atggttgatggttcttattcttatcttttctgcaaactatttgcaacaatttgtcaatggaaaatcccaagtgccatgtctttttatctttggagattct 190  Q
    ||||||| | ||||||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||| |||||||||||||| |||    
T  5587192 atggttggtagttcttattgttttcttttctgcaaactatttgcaacaatgtgtcaatgggaaatcccaagtgccttgtctatttatctttggagactct 5587093  T
Q  191 ttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatggaatcgacttcccgatgggcccaaccggaagattta 290  Q
    |||||||||||||||||||| || |||||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||    
T  5587092 ttatctgatagtggaaacaacaataaccttcctacctctgcaaaatctaattacaatccctatggaatcgactttccgatgggcccaactggaagattta 5586993  T
Q  291 ccaacggtcgaacttcaattgacataataagtagcattc 329  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  5586992 ccaacggtcgaacttcaattgacataatcagtaacattc 5586954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 83 - 350
Target Start/End: Complemental strand, 5573669 - 5573403
Alignment:
Q  83 atcaaaacatggttgatggttcttattcttatcttttctgcaaactatttgcaacaatttgtcaatggaaaatcccaagtgccatgtctttttatctttg 182  Q
    ||||||||||||||| ||||||||||| || |||| ||||||||||||||  |||||| ||||||||| ||||| |||||||| ||| | ||||||||||    
T  5573669 atcaaaacatggttggtggttcttattgttttcttgtctgcaaactattttaaacaatgtgtcaatgggaaatctcaagtgccttgtgtatttatctttg 5573570  T
Q  183 gagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatggaatcgacttcccgatgggcccaaccgg 282  Q
    |||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  5573569 gagattctttatctgatagtggaaacaacaataaccttcctacctctgcaaaatctaattacaaaccttatggaattgactttccgatgggtccaaccgg 5573470  T
Q  283 aagatttaccaacggtcgaacttcaattgacataataagtagcattccgttcaacttatctatattat 350  Q
    |||||||||||||||| ||||| |||||||||||||||||| |||| | ||||||||  |||||||||    
T  5573469 aagatttaccaacggtagaactgcaattgacataataagtaacatt-ctttcaacttggctatattat 5573403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 90 - 352
Target Start/End: Complemental strand, 5593429 - 5593165
Alignment:
Q  90 catggttgatggttcttattcttatcttttctgcaaactatttgcaacaatttgtcaatggaaaatcccaagtgccatgtctttttatctttggagattc 189  Q
    |||||||| || ||| ||||||| |||| ||||||||||||||||| |||| ||||||||| ||||||||||| || |||||||||||||||||||||||    
T  5593429 catggttggtgtttcctattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattc 5593330  T
Q  190 tttatctgatagtggaaacaataacaaccttcccac---ctctgcaaaatctaattacaaaccttatggaatcgacttcccgatgggcccaaccggaaga 286  Q
    |||||||||| |||||||||| |||||||||||  |   |||| ||| ||| |||||||| ||||| || ||||||||||||||||||||||||||||||    
T  5593329 tttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaaga 5593230  T
Q  287 tttaccaacggtcgaacttcaattgacataataagtagcattccgttcaacttatctatattatga 352  Q
    |||||||||||||||||| |||||||||||||||||| |||| | || |||||||| |||||||||    
T  5593229 tttaccaacggtcgaactacaattgacataataagtaacatt-cttttaacttatccatattatga 5593165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 82 - 323
Target Start/End: Original strand, 12051689 - 12051934
Alignment:
Q  82 gatcaaaacatggttgatggttcttattcttatcttttctgcaaactatttgcaacaatttgtcaatggaaaatcccaagtgccatgtctttttatcttt 181  Q
    |||||| ||||||||| || | ||||||||| || | || ||||||||||| |||||   |||| |||  ||||  ||||| ||  |||| |||||||||    
T  12051689 gatcaagacatggttggtgatgcttattcttttcatgtccgcaaactatttacaacacagtgtctatgagaaatatcaagtacctagtctgtttatcttt 12051788  T
Q  182 ggagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatggaatcga---cttcc-cgatgggccca 277  Q
    || || ||||||| |||||||| |||||| || |||||||| |||| |||  ||| | ||||||||||||||||||||||   ||||| || | ||| ||    
T  12051789 ggggactctttatatgatagtgaaaacaacaataaccttcctacctttgcttaatttgattacaaaccttatggaatcgattccttcctcgctcggcgca 12051888  T
Q  278 accggaagatttaccaacggtcgaacttcaattgacataataagta 323  Q
    ||| ||||||||||||||||||||||| ||||| ||||||||||||    
T  12051889 accagaagatttaccaacggtcgaactgcaattaacataataagta 12051934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 89 - 192
Target Start/End: Complemental strand, 5582938 - 5582835
Alignment:
Q  89 acatggttgatggttcttattcttatcttttctgcaaactatttgcaacaatttgtcaatggaaaatcccaagtgccatgtctttttatctttggagatt 188  Q
    ||||||||| || ||| ||||||| |||| ||||||||||||||||| |||| ||||||||| ||||||||||| || ||||||||||||||||||||||    
T  5582938 acatggttggtgtttcctattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagatt 5582839  T
Q  189 cttt 192  Q
    ||||    
T  5582838 cttt 5582835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 329
Target Start/End: Original strand, 12064683 - 12064772
Alignment:
Q  240 attacaaaccttatggaatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaacttcaattgacataataagtagcattc 329  Q
    ||||||||||||||||||| |||| |||||| ||  ||||||||||||||||||| ||||||||| |||||||||||||||||| |||||    
T  12064683 attacaaaccttatggaattgactccccgatcggaacaaccggaagatttaccaatggtcgaactacaattgacataataagtaacattc 12064772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 350
Target Start/End: Original strand, 12059272 - 12059381
Alignment:
Q  240 attacaaaccttatggaatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaacttcaattgacataataagtagcattccgttcaactt 339  Q
    |||| ||||||||||||||||||| ||||||  |  || || ||||||||||||| ||||||||| |||||||||||||||||| |||| | ||||| ||    
T  12059272 attagaaaccttatggaatcgactccccgatcagtgcagccagaagatttaccaatggtcgaactgcaattgacataataagtaacatt-ctttcaattt 12059370  T
Q  340 atctatattat 350  Q
    | |||||||||    
T  12059371 aactatattat 12059381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 352
Target Start/End: Complemental strand, 5582793 - 5582733
Alignment:
Q  292 caacggtcgaacttcaattgacataataagtagcattccgttcaacttatctatattatga 352  Q
    ||||||||||||| |||||||||||||||||| || | | ||||| |||||||||||||||    
T  5582793 caacggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattatga 5582733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 156 - 323
Target Start/End: Complemental strand, 36358051 - 36357884
Alignment:
Q  156 cccaagtgccatgtctttttatctttggagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatgg 255  Q
    ||||||| ||||||||||| || ||||||||||||||||| || ||||||||||| || |||||  | |||  ||| |||  ||||||||  ||||||||    
T  36358051 cccaagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacctagctaccgatgccaaagttaattacaggccttatgg 36357952  T
Q  256 aatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaacttcaattgacataataagta 323  Q
     || || || ||    || || ||||||||||||||||| || || ||||||||||||||||| ||||    
T  36357951 gattgattttccagctggtcctaccggaagatttaccaatggccgtacttcaattgacataatcagta 36357884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 318
Target Start/End: Complemental strand, 7017710 - 7017550
Alignment:
Q  158 caagtgccatgtctttttatctttggagattctttatctgatagtggaaacaataacaaccttcccacctctgcaaaatctaattacaaaccttatggaa 257  Q
    |||||||| ||||||||| | ||||| || ||||||||||| ||||||||||| ||  | |||   ||  ||||||||  |||||||||||| ||||| |    
T  7017710 caagtgccttgtctttttgtttttggtgactctttatctgacagtggaaacaacaatgatcttgttacaactgcaaaagttaattacaaaccatatggca 7017611  T
Q  258 tcgacttcccgatgggcccaaccggaagatttaccaacggtcgaacttcaattgacataat 318  Q
    |||| || ||||  || ||||| ||||| ||||| || ||   ||| ||||||||||||||    
T  7017610 tcgattttccgacaggtccaacaggaaggtttactaatggattaacatcaattgacataat 7017550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University