View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13824_low_13 (Length: 438)

Name: NF13824_low_13
Description: NF13824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13824_low_13
NF13824_low_13
[»] chr1 (2 HSPs)
chr1 (32-428)||(43427152-43427551)
chr1 (324-368)||(4048507-4048551)
[»] chr7 (4 HSPs)
chr7 (32-392)||(31403504-31403867)
chr7 (36-394)||(42304899-42305259)
chr7 (32-392)||(3897949-3898306)
chr7 (66-392)||(3884099-3884431)
[»] chr2 (1 HSPs)
chr2 (108-386)||(17247168-17247449)
[»] chr3 (1 HSPs)
chr3 (281-353)||(19671160-19671235)
[»] chr6 (1 HSPs)
chr6 (230-312)||(11338503-11338585)
[»] chr4 (2 HSPs)
chr4 (322-392)||(55311249-55311319)
chr4 (347-407)||(55267126-55267186)
[»] chr5 (1 HSPs)
chr5 (347-414)||(24010393-24010460)


Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 32 - 428
Target Start/End: Original strand, 43427152 - 43427551
Alignment:
Q  32 aatgtggattgtgcactatttaacaacaacactattacgggtcttgacatgtgctttaaagactcctccagggcgttgttgttaggctttttaaagtatt 131  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  43427152 aatgtggattgtgcactctttaacaacaacactactacgggtcttgacatgtgctttaaagactcctcaagggcgttgttgttaggcttttcaaagtatt 43427251  T
Q  132 cctatttcaattctactcctctggaagctgaagtgctagacttatttacggctataaacgttgctattaattgtcacataccatatgttatctttgagtc 231  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  43427252 cctatttcaattctactcctctagaagctgaagtgctagacttatttacggctataaacattgctattaattgtcacataccatctgttatctttgagtc 43427351  T
Q  232 tgactgcaagttatttgttgatactattaactccaactctactccaaacaatgaatttggagatattatttctagatgtaaaaatctatt---atctcgc 328  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||   |||||||    
T  43427352 tgaccgtaagttatttgttgatactattaactccaactctactccaaacaatgagtttggagatattatttctagatgtaagaatctattgtcatctcgc 43427451  T
Q  329 aataattttattgtgagctatgtcaggaggcaaacaaataggatagtttataacatagctagagttaccttatttcatcctaaccctatatttttgatga 428  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| |||||||  |||||||| ||||    
T  43427452 aataattttattgtgagctatgtcaggaggcaaacaaatagggtagcttataacatagctagagttaccttatctcaccctaacctaatatttttcatga 43427551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 4048551 - 4048507
Alignment:
Q  324 ctcgcaataattttattgtgagctatgtcaggaggcaaacaaata 368  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||    
T  4048551 ctcgcaataattttattgttagttatgtcaggaggcaagcaaata 4048507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 6e-84; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 32 - 392
Target Start/End: Original strand, 31403504 - 31403867
Alignment:
Q  32 aatgtggattgtgcactatttaacaacaacactattacgggtcttgacatgtgctttaaagactcctccagggcgttgttgttaggctttttaaagtatt 131  Q
    |||||||||| |||||| ||||||||||||||||||||| |||||| ||| | ||||| |||||||||  || |||||||||||||||| |  |||||||    
T  31403504 aatgtggattatgcactctttaacaacaacactattacgagtcttgccatatactttagagactcctctgggtcgttgttgttaggcttctcgaagtatt 31403603  T
Q  132 cctatttcaattctactcctctggaagctgaagtgctagacttatttacggctataaacgttgctattaattgtcacataccatatgttatctttgagtc 231  Q
    ||||||||||||||||| |||  |||||| |||   ||| |||||||  ||| |||||| ||| |||| |||| ||||| |||| |||||||||||||||    
T  31403604 cctatttcaattctactactccagaagctcaagcaataggcttatttgaggccataaacattgttattgattgccacatgccatctgttatctttgagtc 31403703  T
Q  232 tgactgcaagttatttgttgatactattaactccaactctactccaaacaatgaatttggagatattatttctagatgtaaaaatctatt---atctcgc 328  Q
      |||| | |||| |||||||| ||||||||||||| ||||||||||||||||| ||  |||||||||| |||||||||||  |||||||   ||||| |    
T  31403704 caactgtaggttacttgttgatgctattaactccaaatctactccaaacaatgagttcagagatattatatctagatgtaaggatctattatcatctcac 31403803  T
Q  329 aataattttattgtgagctatgtcaggaggcaaacaaataggatagtttataacatagctagag 392  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||| | |||||||||||||||    
T  31403804 aataattttattgtgagctatgtcaggagacaaacaaatagggtagctcataacatagctagag 31403867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 36 - 394
Target Start/End: Complemental strand, 42305259 - 42304899
Alignment:
Q  36 tggattgtgcactatttaacaacaacactattacgggtcttgacatgtgctttaaagactcctccagggcgttgttgttaggctttttaaagtattccta 135  Q
    ||||||| ||||| ||||| |||||||||||||||||||||| ||| ||||||| |||||||||| | ||||||||||||| ||| |  |||||||||||    
T  42305259 tggattgcgcactctttaataacaacactattacgggtcttggcatatgctttagagactcctccggagcgttgttgttagacttctcgaagtattccta 42305160  T
Q  136 tttcaattctactcctctggaagctgaagtgctagacttatttacggctataaacgttgctattaattgtcacataccatatgttatctttgagtctgac 235  Q
    ||||| ||||||||||   |||||||||||| ||| |||||||  |||||||||||||| ||||||| |||| ||  ||| |||||| ||| | | ||||    
T  42305159 tttcatttctactccttcagaagctgaagtgttaggcttatttgaggctataaacgttgttattaatcgtcaaatgacatctgttatatttaaatatgac 42305060  T
Q  236 tgcaagttatttgttgatactattaactccaactctactccaaacaatgaatttggagatattatttctagatgtaaaaatctatt---atctcgcaata 332  Q
    || | |||| ||| |||||| ||||||||||||||||||||| | ||||| || |||||| |||||||||||||||   |||||||   ||||| |||||    
T  42305059 tgtaggttacttgctgatac-attaactccaactctactccacataatgagttcggagatgttatttctagatgtatggatctattgtcatctcacaata 42304961  T
Q  333 attttattgtgagctatgtcaggaggcaaacaaataggatagtttataacatagctagagtt 394  Q
    |||||||| |||||||||| |||||||||||||||| | ||  |||||||||||||||||||    
T  42304960 attttattttgagctatgtgaggaggcaaacaaataaggtatcttataacatagctagagtt 42304899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 32 - 392
Target Start/End: Complemental strand, 3898306 - 3897949
Alignment:
Q  32 aatgtggattgtgcactatttaacaacaacactattacgggtcttgacatgtgctttaaagactcctccagggcgttgttgttaggctttttaaagtatt 131  Q
    ||||||||||||| ||| ||||| ||||||||||||||  |||||||||| | ||||||||||||| |  |||| | |||||||||||| | ||||||||    
T  3898306 aatgtggattgtgaactctttaataacaacactattacatgtcttgacatcttctttaaagactccgctggggcat-gttgttaggcttctaaaagtatt 3898208  T
Q  132 cctatttcaattctactcctctggaagctgaagtgctagacttatttacggctataaacgttgctattaattgtcacataccatatgttatctttgagtc 231  Q
    ||||||| |||| ||||||    | |||||||  | ||  |||||||  |||||||||| ||| |||||||||||| ||  ||| |||||||||||||||    
T  3898207 cctatttaaattttactccatcagtagctgaaacgttaagcttatttgaggctataaacattgttattaattgtcatatgacatttgttatctttgagtc 3898108  T
Q  232 tgactgcaagttatttgttgatactattaactccaactctactccaaacaatgaatttggagatattatttctagatgtaaaaatctatt---atctcgc 328  Q
     ||||  | |||| ||||||  |||||||||||||||||||||||     |||| |||||||||||||||| |||||||||  |||||||   |||||      
T  3898107 cgactataggttacttgttggcactattaactccaactctactcc-----atgagtttggagatattatttatagatgtaaggatctattgtcatctcat 3898013  T
Q  329 aataattttattgtgagctatgtcaggaggcaaacaaataggatagtttataacatagctagag 392  Q
    |||||||||||||||||  ||||||| ||||||| ||||| | ||| | |||||||||||||||    
T  3898012 aataattttattgtgagtaatgtcagaaggcaaataaataaggtagctcataacatagctagag 3897949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 66 - 392
Target Start/End: Complemental strand, 3884431 - 3884099
Alignment:
Q  66 ttacgggtcttgacatgtgctttaaagactcctccagggcgttgttgttaggctttttaaagtattcctatttcaattctactcctctgga--agctgaa 163  Q
    |||| ||| ||| ||| ||||||||||| |||||   |||||||||||||||||| | ||||||||| |||||||||||||||| | |  |  |||||||    
T  3884431 ttacaggttttggcatctgctttaaagaatcctctgaggcgttgttgttaggcttctcaaagtattcttatttcaattctactctttttcagtagctgaa 3884332  T
Q  164 gtgctagacttatttacggctataaacgttgctattaattgtcacataccatatgttatctttgagtctgactgcaagttatttgttgatactattaact 263  Q
     || ||  |||||||  |||||||||| ||| |||||||||||||||  ||| |||||| |  | ||| ||||| | |||| ||||||| ||||||||||    
T  3884331 atgttaagcttatttgaggctataaacattgatattaattgtcacatgacatctgttatatccgtgtccgactgtaggttacttgttgacactattaact 3884232  T
Q  264 ccaa-ctctactccaaacaatgaatttggagatattatttctagatgtaaaaatctatt---atctcgcaataattttattgtgagctatgtcaggaggc 359  Q
     ||| |||||||||| | ||||| || |||||||||||||||||||||||  |||||||   ||||| ||||||||||||||||||  |||||||||| |    
T  3884231 tcaaactctactccacataatgagttcggagatattatttctagatgtaaggatctattgtcatctcacaataattttattgtgagtaatgtcaggagac 3884132  T
Q  360 aaacaaataggatagtttataacatagctagag 392  Q
    || |||||||||||| |  || |||||||||||    
T  3884131 aagcaaataggatagctcgtagcatagctagag 3884099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 108 - 386
Target Start/End: Original strand, 17247168 - 17247449
Alignment:
Q  108 tgttgttaggctttttaaagtattcctatttcaattctactcctctggaagctgaagtgctagacttatttacggctataaacgttgctattaattgtca 207  Q
    ||||||||||||| |  ||| |||| |||||  ||||||||||||  ||| | |||| | ||| |||||||  |||||||||| ||||||||||||||||    
T  17247168 tgttgttaggcttctcgaagcattcttattttcattctactcctccagaaccagaagcgttaggcttatttgaggctataaacattgctattaattgtca 17247267  T
Q  208 cataccatatgttatctttgagtctgactgcaagttatttgttgatactattaactccaactctactccaaacaatgaatttggagatattatttctaga 307  Q
    |||  ||| |||||||||||||||  |||| | |||| ||||||||||||||||||||||||||||| |||||||||| || |||||||| |||||||||    
T  17247268 catgtcatctgttatctttgagtccaactgtaggttacttgttgatactattaactccaactctacttcaaacaatgagttcggagatatcatttctaga 17247367  T
Q  308 tgtaaaaatctatt---atctcgcaataattttattgtgagctatgtcaggaggcaaacaaataggatagtttataacatag 386  Q
    |||||  |||||||   |||||||||||||||||||||||  |||||||| ||||||||||||| | ||||| |||||||||    
T  17247368 tgtaaggatctattgtcatctcgcaataattttattgtgaattatgtcagaaggcaaacaaataaggtagttcataacatag 17247449  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 353
Target Start/End: Original strand, 19671160 - 19671235
Alignment:
Q  281 aatgaatttggagatattatttctagatgtaaaaatctatt---atctcgcaataattttattgtgagctatgtca 353  Q
    ||||| || |||||||| ||||||||||||||  |||||||   ||||||||||||||||||| ||||||||||||    
T  19671160 aatgagttcggagatatcatttctagatgtaaggatctattgtcatctcgcaataattttattatgagctatgtca 19671235  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 312
Target Start/End: Complemental strand, 11338585 - 11338503
Alignment:
Q  230 tctgactgcaagttatttgttgatactattaactccaactctactccaaacaatgaatttggagatattatttctagatgtaa 312  Q
    ||||| ||||||||| |||||||| |||||| ||||| |||||||||    ||||| ||||||||||| || |||||||||||    
T  11338585 tctgattgcaagttagttgttgatgctattatctccacctctactcctcttaatgagtttggagatataatctctagatgtaa 11338503  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 392
Target Start/End: Complemental strand, 55311319 - 55311249
Alignment:
Q  322 atctcgcaataattttattgtgagctatgtcaggaggcaaacaaataggatagtttataacatagctagag 392  Q
    |||| |||||||||||| ||| || ||||| ||||||||| ||| |||||||| |||||||||| ||||||    
T  55311319 atcttgcaataattttactgtaagttatgttaggaggcaagcaattaggatagcttataacataactagag 55311249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 407
Target Start/End: Original strand, 55267126 - 55267186
Alignment:
Q  347 tatgtcaggaggcaaacaaataggatagtttataacatagctagagttaccttatttcatc 407  Q
    |||||||||||||||| ||||||| ||| | ||||||| ||||||||| |||||| |||||    
T  55267126 tatgtcaggaggcaaaaaaatagggtagctcataacattgctagagtttccttatctcatc 55267186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 414
Target Start/End: Complemental strand, 24010460 - 24010393
Alignment:
Q  347 tatgtcaggaggcaaacaaataggatagtttataacatagctagagttaccttatttcatcctaaccc 414  Q
    ||||||||||||||| |||| ||| ||| | ||||||||||||||  | |||||| ||||||||||||    
T  24010460 tatgtcaggaggcaagcaaacagggtagctcataacatagctagaacttccttatctcatcctaaccc 24010393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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