View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13824_low_14 (Length: 308)
Name: NF13824_low_14
Description: NF13824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13824_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 158 - 292
Target Start/End: Complemental strand, 7337510 - 7337374
Alignment:
| Q |
158 |
agtacttcaggagtt-aagaattaaattaattgatatgatcgagtatttttatattcaataatttatttgaaatttgtttaatttcaagaatcagattac |
256 |
Q |
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| T |
7337510 |
agtacttcaggagttcaagaattaaattaattgatatgatcgagtatttttatattcaataatttatttgaaatttgtttaatttcaagaatcagattac |
7337411 |
T |
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| Q |
257 |
caaacacctaccaacttgagagct-aaatgagtaatt |
292 |
Q |
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| T |
7337410 |
caaacacctaccaacttgagagctaaaatgagtaatt |
7337374 |
T |
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Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 7337656 - 7337562
Alignment:
| Q |
9 |
aaaatacatgtaaatagtcaaattaattaggaaagggtttgttggatcatacaannnnnnnnnnnngaggaatggatcatacaatttgatcactg |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7337656 |
aaaatacatgtaaatagtcaaattaattaggaaagggtttgttggatcatacaatttttattttttgaggaatggatcatacaatttgatcactg |
7337562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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