View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13824_low_16 (Length: 244)
Name: NF13824_low_16
Description: NF13824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13824_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 41126527 - 41126303
Alignment:
| Q |
1 |
aacaactttgatcgaatcagtggattctgaagataatttaagacggtcgaggagggtttgcaagacccacttgcgaatttcggagaaggacttggcacga |
100 |
Q |
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| T |
41126527 |
aacaactttgatcgaatcagtggattctgaagataatttaagacggtcgaggagggtttgcaagacccacttgcgaatttcggagaaggacttggcacga |
41126428 |
T |
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| Q |
101 |
gatgggtgaagcatctcagcggcaaggttacgacgtagggtacgccatgtagctccataagaagcagtgttgatggtgtgttgattacttgaaatgaggt |
200 |
Q |
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| T |
41126427 |
gatgggtgaagcatctcagcggcaaggttacgacgtagggtacgccatgtagctccataagaagcagtgttgatggtgtgttgattacttgaaatgaggt |
41126328 |
T |
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| Q |
201 |
tgatattaggaagtggtatagggcg |
225 |
Q |
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| T |
41126327 |
tgatattaggaagtggtatagggcg |
41126303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 2293226 - 2293144
Alignment:
| Q |
101 |
gatgggtgaagcatctcagcggcaaggttacgacgtagggtacgccatgtagctccataagaagcagtgttgatggtgtgttg |
183 |
Q |
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| T |
2293226 |
gatggatgaagcatctcggaagcaaggttacgacgaagggtacgccatgttgggccataataagcggtgttgatgttgtgttg |
2293144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 2309557 - 2309475
Alignment:
| Q |
101 |
gatgggtgaagcatctcagcggcaaggttacgacgtagggtacgccatgtagctccataagaagcagtgttgatggtgtgttg |
183 |
Q |
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| T |
2309557 |
gatggatgaagcatctcgaaagcaaggttacgacggagggtacgccatgttgggccataaaaagcggtgttgatgttgtgttg |
2309475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 183
Target Start/End: Complemental strand, 2320606 - 2320464
Alignment:
| Q |
41 |
agacggtcgaggagggtttgcaagacccacttgcgaatttcggagaaggacttggcacgagatgggtgaagcatctcagcggcaaggttacgacgtaggg |
140 |
Q |
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| T |
2320606 |
agacggttgatgagagtgtgtaagacccacttccgaatttctgagaacgatttggttttggatggatgaagcatctcggaagcaaggttacgacggaggg |
2320507 |
T |
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| Q |
141 |
tacgccatgtagctccataagaagcagtgttgatggtgtgttg |
183 |
Q |
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| T |
2320506 |
tacgccatgttgggccataaaaagcggagctgatgttgtgttg |
2320464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 183
Target Start/End: Complemental strand, 2350416 - 2350333
Alignment:
| Q |
100 |
agatgggtgaagcatctcagcggcaaggttacgacgtagggtacgccatgtagctccataagaagcagtgttgatggtgtgttg |
183 |
Q |
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| T |
2350416 |
agatggatgaagcatctcagaagcaaggtttcgacggagggcacgccatgttgcaccataaaaagcggagctgatgttgtgttg |
2350333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 2326400 - 2326351
Alignment:
| Q |
101 |
gatgggtgaagcatctcagcggcaaggttacgacgtagggtacgccatgt |
150 |
Q |
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| T |
2326400 |
gatggatgaagcatctcagaggcgaggttacgacggagggtacaccatgt |
2326351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 2330116 - 2330051
Alignment:
| Q |
100 |
agatgggtgaagcatctcagcggcaaggttacgacgtagggtacgccatgtagctccataagaagc |
165 |
Q |
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| T |
2330116 |
agatggatgaagcatctcggaggcgaggttacgacggagagtacgccatgttggtccataaaaagc |
2330051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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