View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13824_low_18 (Length: 236)
Name: NF13824_low_18
Description: NF13824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13824_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 39193220 - 39193005
Alignment:
| Q |
18 |
tgtcttactgtggttcatctattgtcttccccattttcgcaattaaatttgaatgtagcggtctttccttgtttaaaaacattaacattgtcagaaagag |
117 |
Q |
| |
|
|||||||| |||||||||||||||| | |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39193220 |
tgtcttaccatggttcatctattgtcattcccatttttgcaattaaatttgaatgcagcggtctttccttgtttaaaaacattaacattgtcagtaagag |
39193121 |
T |
|
| Q |
118 |
ttttacatcaatgataaagaacctctatggagaaaaactatgtatgtaattcctagaaaaccttcagccattatatgttacagaaaccaccatatgctag |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39193120 |
ttttacatcaatgataaagaacctctacggagaaaaactatgtatgtaattcctagaaaaccttcagccattatatgttaaagaaaccaccatatgctag |
39193021 |
T |
|
| Q |
218 |
aatatcttccatgtat |
233 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
39193020 |
aatatattccatgtat |
39193005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 27 - 161
Target Start/End: Complemental strand, 39222564 - 39222430
Alignment:
| Q |
27 |
gtggttcatctattgtcttccccattttcgcaattaaatttgaatgtagcggtctttccttgtttaaaaacattaacattgtcagaaagagttttacatc |
126 |
Q |
| |
|
||||||||||| ||| ||||||||||||| |||||||||||||| || |||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
39222564 |
gtggttcatctcttgctatccccattttcgcgattaaatttgaatgcagtggtctttccttgtttagaaacattaacattgtcataaagagttttacatc |
39222465 |
T |
|
| Q |
127 |
aatgataaagaacctctatggagaaaaactatgta |
161 |
Q |
| |
|
||| ||||||||| |||| |||||||||||||||| |
|
|
| T |
39222464 |
aataataaagaacttctacggagaaaaactatgta |
39222430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 39222345 - 39222291
Alignment:
| Q |
179 |
cttcagccattatatgttacagaaaccaccatatgctagaatatcttccatgtat |
233 |
Q |
| |
|
||||||||||||||||||| | |||| |||||||||||||||||||||||||| |
|
|
| T |
39222345 |
cttcagccattatatgttaaaaggaccagcatatgctagaatatcttccatgtat |
39222291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University