View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13824_low_2 (Length: 654)
Name: NF13824_low_2
Description: NF13824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13824_low_2 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 150 - 651
Target Start/End: Original strand, 33068016 - 33068513
Alignment:
| Q |
150 |
tcttttccaacattggttcactcttttgccatcatacaccttgtgtttttgggtgcatgcatttaggaaagagaaagattagaatttatattctttccca |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33068016 |
tcttttccaacattggttcactcttttgccatcatacaccatgtgtttttgggtgca----tttaggaaagagaaagattagaatttatatcctttccca |
33068111 |
T |
|
| Q |
250 |
cgttgcagtgcagatatagtcgtcctaaccactgttttgttgagt--aaaaaataattgactgttattttgttgaaaaaatcccctctgtatggtatgtt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33068112 |
cgttgcagtgcagatatagtcgtcctaaccactattttgttgagtaaaaaaaataatggactgttattttgttgaaaaaatcccctctgtatggtatgtt |
33068211 |
T |
|
| Q |
348 |
ttttcatgnnnnnnnnnnnctaatttatttgtgtagtagcttttatttttaactacaataatctttatctttatatatctaatctcttaagtcttcaaac |
447 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33068212 |
ttttcatgaaaaaaaaaaactaatttgtttgtgtagtagcttttatttttaactacaataatctttatctttatatatctaatctcttaagtctccaaac |
33068311 |
T |
|
| Q |
448 |
ccttatnnnnnnnnnnnnnttcaaaccctactcttaccattttttggcgtccaaaaatgttcatttggagtaactaaacacttaactggtccaacatacc |
547 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||| |||||||||||| |
|
|
| T |
33068312 |
ccttgtaaaaaaaaaaaaa--aaaaccctactcttaccattttttggcgtctaaaaatgttcatttgaagtaactaaacatttaaccggtccaacatact |
33068409 |
T |
|
| Q |
548 |
atgtatttaatgttcatatgacattttatgaaatatggggagaggatcctctccgatgataaactctcctgttttctgcgatcattaaatctcaccatta |
647 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
33068410 |
atgtatttaatgttcatatgacaacttatgaaatatggggagaggatcctctccgatgataaactctcatgttttctgcaatcattaaatctcaccatta |
33068509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 33067905 - 33067955
Alignment:
| Q |
41 |
tgtgggtgtccattgtcggcacaagaattcctacaatttaaatattctctc |
91 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33067905 |
tgtgcgtgtccattgtcggcacaagaattcctacaatttaaatattctctc |
33067955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 586 - 654
Target Start/End: Complemental strand, 34040416 - 34040348
Alignment:
| Q |
586 |
ggagaggatcctctccgatgataaactctcctgttttctgcgatcattaaatctcaccattaactacac |
654 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||| | |||||||||||||| |||||| ||||| |
|
|
| T |
34040416 |
ggagaggatcctctccaatgaaaaactctcctgttttctaccatcattaaatctcatcattaattacac |
34040348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 585 - 654
Target Start/End: Original strand, 11211343 - 11211411
Alignment:
| Q |
585 |
gggagaggatcctctccgatgataaactctcctgttttctgcgatcattaaatctcaccattaactacac |
654 |
Q |
| |
|
|||||||||||||||| ||| |||||||| |||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
11211343 |
gggagaggatcctctcttgtgagaaactctca-gttttctgcggtcattaaatctcaccattaattacac |
11211411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 585 - 654
Target Start/End: Original strand, 11278208 - 11278277
Alignment:
| Q |
585 |
gggagaggatcctctccgatgataaactctcctgttttctgcgatcattaaatctcaccattaactacac |
654 |
Q |
| |
|
|||||||||||||||| ||| |||||||| ||||||| | |||||||||||||||||||| ||||| |
|
|
| T |
11278208 |
gggagaggatcctctcatgtgagaaactctcgagttttctactgtcattaaatctcaccattaattacac |
11278277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University