View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13824_low_20 (Length: 227)
Name: NF13824_low_20
Description: NF13824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13824_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 36767262 - 36767061
Alignment:
| Q |
12 |
gaagaagaaaggtcgatcgaatgcaatcctccgggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttccacactgaa |
111 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36767262 |
gaagaagaaaggtcattcgaatgcaatcctccaggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttccacactgaa |
36767163 |
T |
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| Q |
112 |
atgcttgtcaataaggtctccaagtggaaaattgtcatgccagattaacgatgcatcatcatcaccactgccactgatctcagtaaaaaatgatgtccac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36767162 |
atgcttgtcaataaggtctccaagtggaaaattgtcatgccagattaacgatgcatcatcatcaccactgccactgatctcagtaaaaaatgatgtccac |
36767063 |
T |
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| Q |
212 |
at |
213 |
Q |
| |
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|| |
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| T |
36767062 |
at |
36767061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 47 - 149
Target Start/End: Complemental strand, 36748761 - 36748659
Alignment:
| Q |
47 |
ctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttccacactgaaatgcttgtcaataaggtctccaagtggaaaattgt |
146 |
Q |
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||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||| || ||| |||||||||||||||||| |||||||||||| || |
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| T |
36748761 |
ctggtttggagtgccgtttcaaatcccaattccttaactttttcatgatacttctccataccgaagtgcttgtcaataaggtctgcaagtggaaaatcgt |
36748662 |
T |
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| Q |
147 |
cat |
149 |
Q |
| |
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||| |
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| T |
36748661 |
cat |
36748659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 36771860 - 36771658
Alignment:
| Q |
12 |
gaagaagaaaggtcgatcgaatgcaatcctccgggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttccacactgaa |
111 |
Q |
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||||||| || |||| |||||||||||| | || | ||||| |||||| ||| |||| || |||||| |||||||||||| | ||||| || ||| |
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| T |
36771860 |
gaagaagcaacgtcgtgcgaatgcaatccgctaggtttgtttgtagtgccctttgtaatctcagctccttagctttttcatgatgcatttccttaccgaa |
36771761 |
T |
|
| Q |
112 |
atgcttgtcaataaggtctccaagtggaaaattgtcatgccagattaacgatgcatcatcatcaccactgccactgatctcagtaaaaaatgatgtccac |
211 |
Q |
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|||||| |||||||||||||||||||||||| | ||| ||||||||| | |||||||||||||||| ||| | ||||| ||||||| |||||||||| |
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| T |
36771760 |
atgcttatcaataaggtctccaagtggaaaaccgacatcccagattaatgcgtcatcatcatcaccactaccatttatctcggtaaaaagtgatgtccac |
36771661 |
T |
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| Q |
212 |
att |
214 |
Q |
| |
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||| |
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| T |
36771660 |
att |
36771658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 36756131 - 36756042
Alignment:
| Q |
15 |
gaagaaaggtcgatcgaatgcaatcctccgggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttcca |
104 |
Q |
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|||||||| ||| |||||||||||| || ||||||||||||||||| ||||||||||||| ||||| ||||||||||||| ||| |||| |
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| T |
36756131 |
gaagaaagttcgtacgaatgcaatccaccaggctggtttggagtgccgtttcaaatcccaattccttaactttttcatgattcttctcca |
36756042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 214
Target Start/End: Complemental strand, 21138323 - 21138154
Alignment:
| Q |
45 |
ggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttccacactgaaatgcttgtcaataaggtctccaagtggaaaatt |
144 |
Q |
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|||| ||||||||| | |||||||| |||||||||| |||||||||||| |||||||| |||||||||||| | |||| | |||| | |||||||| |
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| T |
21138323 |
ggctagtttggagtactctttcaaattccaactccttaactttttcatgaaacttttcctgactgaaatgcttattgataaagcctccgaaaggaaaatt |
21138224 |
T |
|
| Q |
145 |
gtcatgccagattaacgatgcatcatcatcaccactgccactgatctcagtaaaaaatgatgtccacatt |
214 |
Q |
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|||| ||||| | | | | |||| |||||||||| | | |||||||||| |||||||| ||||||||| |
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| T |
21138223 |
atcatcccagactgatgtggtatcaccatcaccactactattgatctcagtgaaaaatgacgtccacatt |
21138154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 36748662 - 36748619
Alignment:
| Q |
170 |
tcatcaccactgccactgatctcagtaaaaaatgatgtccacat |
213 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||| |
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| T |
36748662 |
tcatcacctctcccactgatctcagtaaaaaatgatgtccacat |
36748619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 36756038 - 36755976
Alignment:
| Q |
151 |
ccagattaacgatgcatcatcatcaccactgccactgatctcagtaaaaaatgatgtccacat |
213 |
Q |
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||||||||| | |||||| ||||||| || |||| ||||||||||||| ||||||||||||| |
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| T |
36756038 |
ccagattaatggggcatcaccatcaccgctaccaccgatctcagtaaaatatgatgtccacat |
36755976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 23462775 - 23462824
Alignment:
| Q |
108 |
tgaaatgcttgtcaataaggtctccaagtggaaaattgtcatgccagatt |
157 |
Q |
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|||||||||| |||| || |||||||| |||||||||||||| ||||||| |
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| T |
23462775 |
tgaaatgcttatcaacaaagtctccaaatggaaaattgtcatcccagatt |
23462824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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