View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13824_low_3 (Length: 610)
Name: NF13824_low_3
Description: NF13824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13824_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 4 - 528
Target Start/End: Original strand, 45520942 - 45521467
Alignment:
| Q |
4 |
tcatttgtctcaccctttatgtaattaacatgcgtgagactttcatttacgtgtca--gtttatattttgatttttatttgtttctatggaagcattaac |
101 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45520942 |
tcatttgtctcaccctttacgtaattaacatgcgtgaggctttcatttatgtgtcactgtttatattttgatttttatctgtttctatggaagcattaac |
45521041 |
T |
|
| Q |
102 |
attcagttgggtaacttttatcatcaactacgaccaccatacaccacacttgtgttttaactccttccattcaacctaaagtttcaaaatttcaatcaca |
201 |
Q |
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| T |
45521042 |
attcaattgggtaacttttatcatcaactacaaccaccatacaccacacttgtgttttaactcctttcattcaacccaaagtttcaaaatttcaatcaca |
45521141 |
T |
|
| Q |
202 |
actacacaaactacaaccacccaaaatcaaatttcttctcnnnnnnnnncttccattttttccttgaaggcatgcaatcgagaaacaattattttactct |
301 |
Q |
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| T |
45521142 |
actacacaaactacaaccacccaaaatcaaatttcttctc-ttttttttcttccattttttgcttgaaggcatgcaatcgacaaacaattattttactct |
45521240 |
T |
|
| Q |
302 |
ggttactctttctttttgagaaatgataaattaatcacaaaaattaaaagccacnnnnnnnnttaaactttattgtccgaaaaagaagagagtattgagt |
401 |
Q |
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| T |
45521241 |
ggttactctttctctttgagaaatgataaattaatcacagaaattaaaagcaacaaaaaaaattaaactttattgtccgaaaaagaagagagtattgaga |
45521340 |
T |
|
| Q |
402 |
tctgtcaggnnnnnnncgtgcaagagtagtggggaagtggatgcaaccataaatgttattatcggagaaatggggaaggagatgtcattaatgtttcatc |
501 |
Q |
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| T |
45521341 |
tctgtcaggaaaaaaacgtgcaagagtattggggaagtggatgcaaccatagatgctattattggagaaatggggaaggagatgtcgttaatgtttcatc |
45521440 |
T |
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| Q |
502 |
atcaaacccaaaataccttaatagtta |
528 |
Q |
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| T |
45521441 |
atcaaacccaaaataccttaatagtta |
45521467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 10566497 - 10566734
Alignment:
| Q |
4 |
tcatttgtctcaccctttatgtaattaacatgcgtgagactttcatttacgtgtcagtttatattttgatttttatttgtttctatggaagcattaacat |
103 |
Q |
| |
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| T |
10566497 |
tcatttgtctcaccctttatgtaattaacatgcgtgagactttcatttacgtgtcaaattatattttgatttttatttgtttctatagaagcattaacat |
10566596 |
T |
|
| Q |
104 |
tcagttgggtaacttttatcatcaactacgaccaccatacaccacacttgtgttttaactccttccattcaacctaaagtttcaaaatttcaatcacaac |
203 |
Q |
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| T |
10566597 |
tcagttgggtaacttttatcatcaactacaaccaccatacaccacacttgtgttttaactccttccattcaacccaaagtttcaaaatttcaatcacaac |
10566696 |
T |
|
| Q |
204 |
tacacaaactacaaccacccaaaatcaaatttcttctc |
241 |
Q |
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| T |
10566697 |
tacacaaactacaaccacccaaaatcaaatttcttctc |
10566734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 292 - 541
Target Start/End: Original strand, 10566757 - 10567007
Alignment:
| Q |
292 |
attttactctggttactctttctttttgagaaatgataaattaatcacaaaaattaaaagccacnnnnnnnnttaaactttattgtccgaaaaagaagag |
391 |
Q |
| |
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| T |
10566757 |
attttactctggttactctttctttttgagaaatgataaattaatcacagaaattaaacgcaacaaaaaaaattaaactttattgtccgaaaaagaagag |
10566856 |
T |
|
| Q |
392 |
agtattgagttctgtcaggnnnnnnn-cgtgcaagagtagtggggaagtggatgcaaccataaatgttattatcggagaaatggggaaggagatgtcatt |
490 |
Q |
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| T |
10566857 |
agtattgagatctgtcatgaaaaaaaacgtgcaagagtattggggaagtggatgcaaccatagatgctattattggagaaatggggaaggagatgtcgtt |
10566956 |
T |
|
| Q |
491 |
aatgtttcatcatcaaacccaaaataccttaatagttaatataggaagaag |
541 |
Q |
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| T |
10566957 |
aatgtttcatcatcaaacccaaaataccctaatagttaatatatgaagaag |
10567007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 1e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 52728266 - 52727974
Alignment:
| Q |
8 |
ttgtctcaccctttatgtaattaacatgcgtgagactttcatttacgtgtca--gtttatattttgatttttatttgtttctatggaagcattaacattc |
105 |
Q |
| |
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||||||| || ||||||||||||||||| |||||||||||||| | ||| || |||||||||||||||||||||||||||| ||||| | |||||| |
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| T |
52728266 |
ttgtctctccttttatgtaattaacatg--tgagactttcatttctttctcactgtgtatattttgatttttatttgtttctatgaaagcacttacattc |
52728169 |
T |
|
| Q |
106 |
agttgggtaacttttatcatcaactacgaccaccat-acaccacacttgtgttttaactccttccattcaacctaaagtttcaaaatttcaatcacaact |
204 |
Q |
| |
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| T |
52728168 |
tgttgg-taattttcaacatcaaatacaaccaccatcacaccacacttgtgttttaactccttccattcacccccaagcttcaaaatttcaatcacaact |
52728070 |
T |
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| Q |
205 |
acacaaactacaaccacccaaaatcaaatttcttctcnnnnnnnnncttccattttttccttgaaggcatgcaatcgagaaacaattattttactctggt |
304 |
Q |
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||||||||||||||||||| ||||||||| | ||||| ||||| ||||| ||||||||||| |||| || ||||||||||||||||||||| |
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| T |
52728069 |
acacaaactacaaccaccctaaatcaaatattttctcctttt-----ttccaatttttgcttgaaggcattcaattgacaaacaattattttactctggt |
52727975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 426 - 512
Target Start/End: Complemental strand, 52727820 - 52727735
Alignment:
| Q |
426 |
agtagtggggaagtggatgcaaccataaatgttattatcggagaaatggggaaggagatgtcattaatgtttcatcatcaaacccaa |
512 |
Q |
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|||| |||||||||||||||||||||| ||| ||| | |||||||||| |||||||||||||||| |||||| ||| |||||||| |
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| T |
52727820 |
agtattggggaagtggatgcaaccatagatgctatgct-ggagaaatggaaaaggagatgtcattaacgtttcaccattaaacccaa |
52727735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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