View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13824_low_4 (Length: 554)
Name: NF13824_low_4
Description: NF13824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13824_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 488; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 14 - 537
Target Start/End: Complemental strand, 31189552 - 31189029
Alignment:
| Q |
14 |
atcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgtt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31189552 |
atcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgtt |
31189453 |
T |
|
| Q |
114 |
gctggaaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttggc |
213 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31189452 |
gctggaaatggttggtgggaggaaaaacattattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttggc |
31189353 |
T |
|
| Q |
214 |
actaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31189352 |
actaatctgagacctgatggggttatggatacagaagaagacgagattgcaaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtg |
31189253 |
T |
|
| Q |
314 |
atagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactaggtcaat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31189252 |
atagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactaggtcaat |
31189153 |
T |
|
| Q |
414 |
atcagagtcttctaagtcttaatatttgagggtaagtataattgttatatatcttttaatcagagttggtaacctcttcaaatgaagacactctccaccc |
513 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31189152 |
atcagagtcttttaagtcttaatatttgagggtaagtataattgttatatatcttttaatcaaagttgataacctcttcaaatgaagacactctccaccc |
31189053 |
T |
|
| Q |
514 |
ttttaatcatcttgtgaagcaatt |
537 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
31189052 |
ttttaatcatcttgtgaagaaatt |
31189029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 14 - 537
Target Start/End: Complemental strand, 31201359 - 31200836
Alignment:
| Q |
14 |
atcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgtt |
113 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| |
|
|
| T |
31201359 |
atcaaagagggactatgggatatgtagctccagaaatgtggaatagacattttggaggagtttcatacaagtccgatgtttatagttatggaatgatgtt |
31201260 |
T |
|
| Q |
114 |
gctggaaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttggc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
31201259 |
gctggaaatggttggagggaggaaaaacattaatgctgatgcaagtctcacaagtgagatatactttcctcactgggtatacaataggcttgagcttggt |
31201160 |
T |
|
| Q |
214 |
actaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtg |
313 |
Q |
| |
|
| |||| ||||||||||||| |||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31201159 |
agtaatttgagacctgatggagttatggatacagaagaagacaagattgcaaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtg |
31201060 |
T |
|
| Q |
314 |
atagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactaggtcaat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31201059 |
atagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactaggtcaat |
31200960 |
T |
|
| Q |
414 |
atcagagtcttctaagtcttaatatttgagggtaagtataattgttatatatcttttaatcagagttggtaacctcttcaaatgaagacactctccaccc |
513 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31200959 |
atcagagtcttttaagtcttaatatttgagggtaagtataattgttatatatcttttaatcagagttggtaacctcttcaaatgaagacactctccaccc |
31200860 |
T |
|
| Q |
514 |
ttttaatcatcttgtgaagcaatt |
537 |
Q |
| |
|
|||||||||| ||||||||||||| |
|
|
| T |
31200859 |
ttttaatcattttgtgaagcaatt |
31200836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 14 - 435
Target Start/End: Complemental strand, 31145494 - 31145073
Alignment:
| Q |
14 |
atcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgtt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31145494 |
atcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgtt |
31145395 |
T |
|
| Q |
114 |
gctggaaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttggc |
213 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31145394 |
gctagaaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttggc |
31145295 |
T |
|
| Q |
214 |
actaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31145294 |
actaatctgagacctgatggggttatggatacagaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtg |
31145195 |
T |
|
| Q |
314 |
atagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactaggtcaat |
413 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| | |||||||| |||||||||||||| |
|
|
| T |
31145194 |
atagacctacaatgagtaaagttattgaaatgttagaagttaacatgaattcacttgaaataccacccaaaccgttgctttcttctcctactaggtcaat |
31145095 |
T |
|
| Q |
414 |
atcagagtcttctaagtcttaa |
435 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
31145094 |
atcagagtcttctaagtcttaa |
31145073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 14 - 426
Target Start/End: Complemental strand, 31171807 - 31171395
Alignment:
| Q |
14 |
atcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgtt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31171807 |
atcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgtt |
31171708 |
T |
|
| Q |
114 |
gctggaaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttggc |
213 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31171707 |
gctagaaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttggc |
31171608 |
T |
|
| Q |
214 |
actaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31171607 |
actaatctgagacctgatggggttatggatacagaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtg |
31171508 |
T |
|
| Q |
314 |
atagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactaggtcaat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||| ||||||| | ||| || || ||||| ||| | |
|
|
| T |
31171507 |
atagacctacaatgagtaaagtgattgaaatgttagaagttacaatgaattcactggaaatgccaccaaaaccattacattcatctcccactagatcagt |
31171408 |
T |
|
| Q |
414 |
atcagagtcttct |
426 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31171407 |
atcagagtcttct |
31171395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 474
Target Start/End: Original strand, 30961092 - 30961551
Alignment:
| Q |
14 |
atcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgtt |
113 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30961092 |
atcaaagagggacaatggggtatgtagctcctgaagtgtggaatagacattttggaggagtttcacacaagtctgatgtttatagttatggaatgatgtt |
30961191 |
T |
|
| Q |
114 |
gctggaaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttggc |
213 |
Q |
| |
|
| | |||||||| || || ||||||| || | ||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||| |
|
|
| T |
30961192 |
gttagaaatggtgggtggacggaaaaatattaatgcggatgcaagtcacacaagtgagatatactttcctcattgggtatacaataggcttgaacttggt |
30961291 |
T |
|
| Q |
214 |
actaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtg |
313 |
Q |
| |
|
| | || |||||||||||||||| | |||||||||||| ||||||| || | ||||||||| ||||||||||| ||||| |||||||||||||| | || |
|
|
| T |
30961292 |
agtgatttgagacctgatggggtaactgatacagaagaaaatgagattgcaaagagaatgaccattgtgggtttgtggtgtattcaaacatttcctaatg |
30961391 |
T |
|
| Q |
314 |
atagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactaggtcaat |
413 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||| | | ||||||||||| ||||||| ||||| || |||||||| ||| | |
|
|
| T |
30961392 |
gcaggcctacaatgagtaaagtagttgaaatgttagaagttaacatgaattcattggaaataccaccaaaaccattgctttcgtctcctactagatcatt |
30961491 |
T |
|
| Q |
414 |
atcagagtcttctaagtcttaatatttgagggtaagtataattgttatatatcttttaatc |
474 |
Q |
| |
|
||||||||||| | ||||||| |||||| |||| ||| |||||||||||| |||||||| |
|
|
| T |
30961492 |
atcagagtcttgcacgtcttaa-atttgacggtatgtaaaattgttatatactttttaatc |
30961551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 456
Target Start/End: Original strand, 31224597 - 31225039
Alignment:
| Q |
14 |
atcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgtt |
113 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
31224597 |
atcaaagaggaacaatggggtatgtagctccagaagtgtggaatagacattttggaggagtttcacacaagtctgatgtttatagttatggaatgatatt |
31224696 |
T |
|
| Q |
114 |
gctggaaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttggc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||| ||| ||||||||||| ||||| |||||||||||||| ||||| ||||||| |
|
|
| T |
31224697 |
gctggaaatggttggagggaggaaaaacattaatgctgatgcaagtcgcacaagtgagatatattttcctcattgggtatacaaaaggcttgagcttgct |
31224796 |
T |
|
| Q |
214 |
actaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtg |
313 |
Q |
| |
|
| | || | ||||||||||| | |||||||||||||||||| |||| || ||||||||||| ||||| ||||| ||||| |||||||| ||||| | || |
|
|
| T |
31224797 |
agtgattttagacctgatggaataatggatacagaagaagataagattgcaaggagaatgaccattgtaggtttgtggtgtattcaaacgtttcctaatg |
31224896 |
T |
|
| Q |
314 |
atagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactaggtcaat |
413 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||| |||||||| | ||||| ||||| ||||||| |||||||| || ||||| || | |
|
|
| T |
31224897 |
ataggcctacaatgagtaaagtgattgaaatgttagatgttagcatgaattcgttggaaatgccaccaaaaccattgctttcttctccgactagatctgt |
31224996 |
T |
|
| Q |
414 |
atcagagtcttctaagtcttaatatttgagggtaagtataatt |
456 |
Q |
| |
|
|||||||||||| | ||| ||| || |||||||| || ||||| |
|
|
| T |
31224997 |
atcagagtcttccacgtcctaaaatctgagggtatgtgtaatt |
31225039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 14 - 479
Target Start/End: Original strand, 30992574 - 30993038
Alignment:
| Q |
14 |
atcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgtt |
113 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30992574 |
atcaaagagggacaatggggtatgtagctccagaagtgtggaatagacattttggaggagtttcacacaagtctgatgtttatagttatggaatgatgtt |
30992673 |
T |
|
| Q |
114 |
gctggaaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttggc |
213 |
Q |
| |
|
| | |||||||| || || ||||||| || | ||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||| |
|
|
| T |
30992674 |
gttagaaatggtgggtggacggaaaaatattaatgcggatgcaagtcacacaagtgagatatactttcctcattgggtatacaataggcttgaacttggt |
30992773 |
T |
|
| Q |
214 |
actaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtg |
313 |
Q |
| |
|
| | || |||||||||||||||| |||||||| |||||||||||||| || | ||| ||||| |||||| |||| ||||| |||||||||||||| | || |
|
|
| T |
30992774 |
agttatttgagacctgatggggtaatggatacggaagaagatgagattgcaaagaggatgaccattgtgagtttgtggtgtattcaaacatttcctaatg |
30992873 |
T |
|
| Q |
314 |
atagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactaggtcaat |
413 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||| |||| | ||||||||||| ||||||| ||||| || |||||||| ||| | |
|
|
| T |
30992874 |
gcagacctacaatgagtaaagtagttgaaatgttagaagttgacattaattcgttggaaataccaccaaaaccattgctttcgtctcctactagatcagt |
30992973 |
T |
|
| Q |
414 |
atcagagtcttctaagtcttaatatttgagggtaagtataattgttatatatcttttaatcagagt |
479 |
Q |
| |
|
||||||||||| | |||||| ||||||| || ||||||||||| |||| |||| |||||||| |
|
|
| T |
30992974 |
atcagagtcttgcacttcttaa-atttgagaatatgtataattgttgtatacttttttatcagagt |
30993038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 31229882 - 31230270
Alignment:
| Q |
19 |
agagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctgg |
118 |
Q |
| |
|
|||||||||||||| ||||||||||| || | ||||||| | |||||||| ||||||| ||||| ||||| |||||||||||||||||||||||||| | |
|
|
| T |
31229882 |
agagggacaatggggtatgtagctcctgagttatggaatataaattttggatgagtttcgcacaagtctgacgtttatagttatggaatgatgttgctag |
31229981 |
T |
|
| Q |
119 |
aaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttggcactaa |
218 |
Q |
| |
|
|||||||||| |||||||||||||| | || ||||||||||| || ||||||||||||||||| |||||||||||||| | || || || ||| | | |
|
|
| T |
31229982 |
aaatggttggtgggaggaaaaacattaacgccgatgcaagtcaaacaagtgagatatactttcctcattgggtatacaagaatcttgatctacgcaatga |
31230081 |
T |
|
| Q |
219 |
tctgagacctgatggggttatggatacagaagaagatgagatcgcgaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtgataga |
318 |
Q |
| |
|
| ||||||| || | || || | | ||||||||||| || || |||||| |||| ||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31230082 |
tttgagaccggacgaagtgattgtctcggaagaagatgaaattgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgataga |
31230181 |
T |
|
| Q |
319 |
cctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactag |
407 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||| |||| ||||| | ||||||||||| ||||| ||||||||| |||||||| |
|
|
| T |
31230182 |
ccaacaatgagtagagtgattgaaatgttagaaggcaacaagaattgtttggaaataccaccaaaacctattctttcttctcctactag |
31230270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 31214333 - 31214663
Alignment:
| Q |
19 |
agagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctgg |
118 |
Q |
| |
|
||||| || ||||||||||||||||| || ||||||||||| | |||||||| ||||| |||| ||||||||||||||||| |||||||||||| ||| |
|
|
| T |
31214333 |
agaggaacgatgggatatgtagctcctgagttgtggaatagaaactttggaggcgtttcgtacaagtctgatgtttatagttacggaatgatgttgttgg |
31214432 |
T |
|
| Q |
119 |
aaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttggcactaa |
218 |
Q |
| |
|
|||| | ||||| ||||||||||| | ||| |||||||||| || ||||||| ||||||||| ||||||||||||| ||| | || || | |||| | |
|
|
| T |
31214433 |
aaataatcggaggaaggaaaaacattagtgccaatgcaagtcatacaagtgagaaatactttcctgattgggtatacaaaaggtttgatctagacactga |
31214532 |
T |
|
| Q |
219 |
tctgagacctgatggggttatggatacagaagaagatgagatcgcgaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtgataga |
318 |
Q |
| |
|
| |||||| |||| || || | || ||| ||||| ||||| | ||||||||| || || || |||||||||||||||||| |||||| ||||||| |
|
|
| T |
31214533 |
tttgagacacgatgaagtgattgccac---agatgatgacatcgcaaagagaatgaccatagtaggattatggtgcattcaaacacttccaaatgataga |
31214629 |
T |
|
| Q |
319 |
cctacaatgagtaaagtgattgaaatgttagaag |
352 |
Q |
| |
|
||| ||||||||| ||| |||||||||||||||| |
|
|
| T |
31214630 |
cctgcaatgagtagagttattgaaatgttagaag |
31214663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 30955351 - 30955737
Alignment:
| Q |
18 |
aagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctg |
117 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| | | |
|
|
| T |
30955351 |
aagaggaacagtcggatatgtagctccagaagtatggaatagacaatttggaggagtttcacacaagtctgatgtttatagttatggaatgatgctttta |
30955450 |
T |
|
| Q |
118 |
gaaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttggcacta |
217 |
Q |
| |
|
|| |||||||||| ||| || || || || | || ||| ||| ||||| ||| || |||||| ||||| ||||||||| |||||| | | | |
|
|
| T |
30955451 |
gagatggttggagtgagaaacaatattgatgttaatacaaatcaaactagcgag---tattttccagattggatatacaataagctagaaaaggagagtg |
30955547 |
T |
|
| Q |
218 |
atctgagacctgatggggttatggatacagaagaagatgagatcgcgaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtgatag |
317 |
Q |
| |
|
|| |||||||||| || |||| | |||||| ||||||| || | ||||||| ||||| ||||||||||||||||||||||| |||| |||| | |
|
|
| T |
30955548 |
atttgagacctgacatagtgatggccattgaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcg |
30955647 |
T |
|
| Q |
318 |
acctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactag |
407 |
Q |
| |
|
||| |||||||||| ||||||||||||||| |||| || ||||||| | |||||||||||||| ||||| | ||||||| |||||||| |
|
|
| T |
30955648 |
accaacaatgagtagagtgattgaaatgttggaaggtagcatgaatgtccttgaaataccaccaaaacctttggtttcttctcctactag |
30955737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 30945091 - 30945184
Alignment:
| Q |
18 |
aagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatg |
111 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30945091 |
aagaggaacagtcggatatgtagctccagaagtatggaatagacaatttggaggagtttcacacaagtctgatgtttatagttatggaatgatg |
30945184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 269 - 386
Target Start/End: Original strand, 30945339 - 30945456
Alignment:
| Q |
269 |
gaatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttact |
368 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| |||| |||| |||| |||||||||| ||||||||||||||| |||| || ||||||| | || |
|
|
| T |
30945339 |
gaatgactattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtagcatgaatatcct |
30945438 |
T |
|
| Q |
369 |
tgaaataccacctaaacc |
386 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
30945439 |
tgaaataccaccaaaacc |
30945456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 441 - 538
Target Start/End: Complemental strand, 31145043 - 31144946
Alignment:
| Q |
441 |
gagggtaagtataattgttatatatcttttaatcagagttggtaacctcttcaaatgaagacactctccacccttttaatcatcttgtgaagcaattg |
538 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||| | ||||| |||||||||| ||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
31145043 |
gagggtaagtataattgttatatatattttaaacagagtggataaccacttcaaatgataacaatctccacccttttaatcatcttgtgaagctattg |
31144946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 539
Target Start/End: Complemental strand, 31171394 - 31171338
Alignment:
| Q |
483 |
taacctcttcaaatgaagacactctccacccttttaatcatcttgtgaagcaattga |
539 |
Q |
| |
|
|||||| |||||||||||||| |||||| || ||||||| |||||| |||||||||| |
|
|
| T |
31171394 |
taaccttttcaaatgaagacaatctccatccctttaatcttcttgttaagcaattga |
31171338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 44035822 - 44035886
Alignment:
| Q |
73 |
gtttcacacaaatctgatgtttatagttatggaatgatgttgctggaaatggttggagggaggaa |
137 |
Q |
| |
|
|||||||| || |||||||| |||||||| |||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
44035822 |
gtttcacataagtctgatgtctatagttacggaatgatgttgctagaaatggttggtgggcggaa |
44035886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 44036041 - 44036105
Alignment:
| Q |
283 |
ggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgtt |
347 |
Q |
| |
|
||||| ||||||||||||||| |||| | | ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
44036041 |
ggtttgtggtgcattcaaacaattcctactcatagacctacaataagtaaagtgattgatatgtt |
44036105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 10906998 - 10907039
Alignment:
| Q |
80 |
acaaatctgatgtttatagttatggaatgatgttgctggaaa |
121 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
10906998 |
acaaatcagatgtttatagttatggaatgatgttgcttgaaa |
10907039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 10930881 - 10930922
Alignment:
| Q |
80 |
acaaatctgatgtttatagttatggaatgatgttgctggaaa |
121 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
10930881 |
acaaatcagatgtttatagttatggaatgatgttgcttgaaa |
10930922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 10993085 - 10993126
Alignment:
| Q |
80 |
acaaatctgatgtttatagttatggaatgatgttgctggaaa |
121 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
10993085 |
acaaatcagatgtttatagttatggaatgatgttgcttgaaa |
10993126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 49215559 - 49215612
Alignment:
| Q |
58 |
agacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatg |
111 |
Q |
| |
|
||||||||||| || || ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
49215559 |
agacattttggtggggtgtcacataaatcagatgtttatagttatggaatgatg |
49215612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 11041245 - 11041285
Alignment:
| Q |
81 |
caaatctgatgtttatagttatggaatgatgttgctggaaa |
121 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
11041245 |
caaatcggatgtttatagttatggaatgatgttgcttgaaa |
11041285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 49683286 - 49683357
Alignment:
| Q |
57 |
tagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctggaaatggttgg |
128 |
Q |
| |
|
|||||||||||| || || ||||||||||| ||||| || ||||||||||||||| | | ||||||||||| |
|
|
| T |
49683286 |
tagacattttggtggggtgtcacacaaatcagatgtctacagttatggaatgatggttttagaaatggttgg |
49683357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 49725317 - 49725400
Alignment:
| Q |
62 |
attttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctggaaatggttggagggaggaaaaacatca |
145 |
Q |
| |
|
||||||| | ||| ||||| || || |||||||| ||||||||||||||| | ||||||||||||| |||| |||||||||| |
|
|
| T |
49725317 |
attttggtgcagtgtcacataagtcagatgtttacagttatggaatgatggtcatggaaatggttgggaggagaaaaaacatca |
49725400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 49728717 - 49728788
Alignment:
| Q |
40 |
gctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatg |
111 |
Q |
| |
|
||||||||||||| |||| ||||||| || || || |||||||||||||| |||||||||||||||||| |
|
|
| T |
49728717 |
gctccagaagtgttctctagaaattttggtggcgtctctcacaaatctgatgtatatagttatggaatgatg |
49728788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 9125151 - 9125105
Alignment:
| Q |
85 |
tctgatgtttatagttatggaatgatgttgctggaaatggttggagg |
131 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||||||||| |||||||||| |
|
|
| T |
9125151 |
tctgatatttatagttatgggatgttgttgctggaattggttggagg |
9125105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 11026541 - 11026582
Alignment:
| Q |
80 |
acaaatctgatgtttatagttatggaatgatgttgctggaaa |
121 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| |||| |
|
|
| T |
11026541 |
acaaatcagatgtttacagttatggaatgatgttgcttgaaa |
11026582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 49714555 - 49714607
Alignment:
| Q |
76 |
tcacacaaatctgatgtttatagttatggaatgatgttgctggaaatggttgg |
128 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||| | | ||||||||||| |
|
|
| T |
49714555 |
tcacataaatcagatgtttatagttatggaatgatggttttagaaatggttgg |
49714607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 31614633 - 31614566
Alignment:
| Q |
64 |
tttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctggaaatggttggagg |
131 |
Q |
| |
|
||||| |||||||| ||||||||||||| ||||||||||||||| || | || |||||| ||||||| |
|
|
| T |
31614633 |
tttggcggagtttcttacaaatctgatgtatatagttatggaatgttgattcttgaaatgattggagg |
31614566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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