View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13824_low_5 (Length: 529)
Name: NF13824_low_5
Description: NF13824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13824_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 82 - 513
Target Start/End: Original strand, 7899191 - 7899623
Alignment:
| Q |
82 |
ttgacaaacttcttccaatattcttccagaatgtaaacatattcaaaatatttctttagaactgtatataagatgaaaactaatccaaaatatagaagct |
181 |
Q |
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| T |
7899191 |
ttgacaaaattcttccaatattcttccagaatgtaaacatattcaaaaaaattctttagaactgtatataagatgaaaactaatccaaaatatagaagct |
7899290 |
T |
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| Q |
182 |
tgaagacatgaattaagttgtgtggaacaatattctcgtcatttaacagaagcaaaattattccaaaaatctactttactgaatgcttgatttgtaagat |
281 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7899291 |
tgaacacatgaattaagttgtgtggaacaatattctcgtcatttaacagaagcaaaattattccaaaaatctactttactgaatgcttgatttgtaagat |
7899390 |
T |
|
| Q |
282 |
agaagtgtcattgcactagatgtatgccaaaaactccttgcacattaaccaactgaagccatgtgtcggatcaagtcaaccacgcgtgagctgtattgag |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7899391 |
agaagtgtcattgcactagatgtatgccaaaaactccttgcacattaaccaactgaagccatgtgtcggatcaagtcaaccacgcgtgagctgtattgag |
7899490 |
T |
|
| Q |
382 |
agaaagaaagnnnnnnnnnnnnnnnnccgaatttaggattcaaaaggtacataacttcaggaatatgtgtaattgtaacctttatcaacac-nnnnnnna |
480 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
7899491 |
agaaagaaagaaaaaaaaattaaaaaccaaatttaggattcaaaaggtacataacttcaggaatatgtgtaattgtaacctttatctacactttttttta |
7899590 |
T |
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| Q |
481 |
tcaactttatctacacttatttatagtatatat |
513 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
7899591 |
tcaactttatctacacttatttatagtatatat |
7899623 |
T |
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