View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13824_low_8 (Length: 463)
Name: NF13824_low_8
Description: NF13824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13824_low_8 |
 | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 41866000 - 41865552
Alignment:
| Q |
1 |
tagtatagaaatctaatagcgaataaaaaataatatctaatagtgataccatttgaataagtcttttcttgatgctaacatcggtcacaatccgagttat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41866000 |
tagtatagaaatctaatagcgaataaaaaataatatctagtagtgataccatttgaataagtcttttcttgatgctaacatcggtcacaatccgagttat |
41865901 |
T |
|
| Q |
101 |
gtttggcggagcattctgcgttcccgtttcattatccgtggaggagctagatggagtattggctctggtgcaacgatccctatccttaatgcaccatggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41865900 |
gtttggcggagcattctgcgttcccgtttcattatccgtggaggagctagatagagtattggctctggtgcaacgatccctatccttaatgcaccatggc |
41865801 |
T |
|
| Q |
201 |
tggctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtgactctaatgttcaaagtttattatctgagcatagttaaagctggaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41865800 |
tggctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtggctctaatgttcaaagtttattatctgagcatagttaaagctggaa |
41865701 |
T |
|
| Q |
301 |
cgcgcctcttgttcaaaacatttttagtaacgacatagctgaaaaaattatgcatacacccttgtatgatcaagtcagccatgatcgtctcaaatggaaa |
400 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41865700 |
cgcgcctcttgttcaacagatttttagtaacgacatagctgaaaaaattatgcatacgcccttgtatgatcaagtcagccatgatcgtctcatatggaaa |
41865601 |
T |
|
| Q |
401 |
gcggaaagtaatggttgttattcgatgcagagcgcataccgcttatgtg |
449 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
41865600 |
gcggaaagtaatggttgttattcggtgcggagcgcataccgcttatgtg |
41865552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 58 - 439
Target Start/End: Complemental strand, 17207584 - 17207203
Alignment:
| Q |
58 |
taagtcttttcttgatgctaacatcggtcacaatccgagttatgtttggcggagcattctgcgttcccgtttcattatccgtggaggagctagatggagt |
157 |
Q |
| |
|
|||||| ||||||||||||| ||| |||| |||||||||||||||||||||||||||||| ||||||| ||||||| | | ||| ||||| |||||||| |
|
|
| T |
17207584 |
taagtcctttcttgatgctagcattggtcgcaatccgagttatgtttggcggagcattctacgttcccttttcattgttcatggtggagcaagatggagc |
17207485 |
T |
|
| Q |
158 |
attggctctggtgcaacgatccctatccttaatgcaccatggctggctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtgact |
257 |
Q |
| |
|
||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
17207484 |
attggctctggtgcaacaatccctattcttcatgcaccatggctggctaatggcgagtcaattgatggtaacattgctggtggtttatatgttcgtgatt |
17207385 |
T |
|
| Q |
258 |
ctaatgttcaaagtttattatctgagcatagttaaagctggaacgcgcctcttgttcaaaacatttttagtaacgacatagctgaaaaaattatgcatac |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||| | |||||||||||| |||||||||||| ||| ||||||| |
|
|
| T |
17207384 |
ttaatgttcaaagtttattatctgagcatagtaaaagtcggaacacgcctcttgttcaatagatttttagtaacaacatagctgaaacaatattgcatac |
17207285 |
T |
|
| Q |
358 |
acccttgtatgatcaagtcagccatgatcgtctcaaatggaaagcggaaagtaatggttgttattcgatgcagagcgcatac |
439 |
Q |
| |
|
|||| |||||||| |||| | |||||||||||||| ||||||||||||||||||||| ||||||||| ||| ||| |||||| |
|
|
| T |
17207284 |
acccatgtatgattaagttatccatgatcgtctcatatggaaagcggaaagtaatggctgttattcggtgcggagtgcatac |
17207203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 55 - 406
Target Start/End: Complemental strand, 12528058 - 12527707
Alignment:
| Q |
55 |
gaataagtcttttcttgatgctaacatcggtcacaatccgagttatgtttggcggagcattctgcgttcccgtttcattatccgtggaggagctagatgg |
154 |
Q |
| |
|
|||||| || ||||| |||| ||||| |||||||||||||||||||||||| |||||||| | |||||||| || ||| | ||||| ||||| |||||| |
|
|
| T |
12528058 |
gaataaatcctttctcaatgccaacattggtcacaatccgagttatgtttggtggagcattttacgttcccgctttattgtgcgtggtggagcaagatgg |
12527959 |
T |
|
| Q |
155 |
agtattggctctggtgcaacgatccctatccttaatgcaccatggctggctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtg |
254 |
Q |
| |
|
|| || || |||||||||| |||| ||| ||| |||||||||||||| ||||||||||||| |||||||||||||| | ||| ||| ||||||||| || |
|
|
| T |
12527958 |
agcatcggttctggtgcaaatatccttattcttgatgcaccatggctgactaatggcgagtctattgatggtaacatagttggaggtctttatgttcatg |
12527859 |
T |
|
| Q |
255 |
actctaatgttcaaagtttattatctgagcatagttaaagctggaacgcgcctcttgttcaaaacatttttagtaacgacatagctgaaaaaattatgca |
354 |
Q |
| |
|
| | ||||||||| | ||||| | |||||| || | || ||||||| ||||||||||||| | | ||||||||| ||||||| |||| ||| |||| |
|
|
| T |
12527858 |
atttcaatgttcaacgcttatttttagagcatggtaagagttggaacgtgcctcttgttcaacagaattttagtaatgacatagttgaagcaatcttgca |
12527759 |
T |
|
| Q |
355 |
tacacccttgtatgatcaagtcagccatgatcgtctcaaatggaaagcggaa |
406 |
Q |
| |
|
||| ||| ||||||||||||| | ||||| ||||||| |||||||||||| |
|
|
| T |
12527758 |
tacgcccctgtatgatcaagttattcatgaccgtctcatttggaaagcggaa |
12527707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 65 - 438
Target Start/End: Original strand, 14484188 - 14484561
Alignment:
| Q |
65 |
tttcttgatgctaacatcggtcacaatccgagttatgtttggcggagcattctgcgttcccgtttcattatccgtggaggagctagatggagtattggct |
164 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||||||||||| ||||||| ||| | ||||||||||||||| |||| || ||||| || ||||||||||||| |
|
|
| T |
14484188 |
tttcttcatgctaccattggtcacaatccgagttatgttgggcggagtattttacgttcccgtttcattgtccgaggcggagcaaggtggagtattggct |
14484287 |
T |
|
| Q |
165 |
ctggtgcaacgatccctatccttaatgcaccatggctggctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtgactctaatgt |
264 |
Q |
| |
|
|||| || || |||||||| ||| | |||||||||||||||| || ||||| || |||||||||| |||| |||| |||| | | ||| | || ||| |
|
|
| T |
14484288 |
ctggggcgactatccctattcttgacacaccatggctggctaacggtgagtctatcaatggtaacatccctggaggttcttatatccatgattttactgt |
14484387 |
T |
|
| Q |
265 |
tcaaagtttattatctgagcatagttaaagctggaacgcgcctcttgttcaaaacatttttagtaacgacatagctgaaaaaattatgcatacacccttg |
364 |
Q |
| |
|
|||| |||||| ||| | ||| || | || ||||| | ||||||||||||| | || |||||||| |||||||||||| ||| | ||||| ||| || |
|
|
| T |
14484388 |
ccaaaatttattgtctcaacatggtaagagttggaatgagcctcttgttcaacagatgtttagtaatgacatagctgaagcgattttacatacgcccctg |
14484487 |
T |
|
| Q |
365 |
tatgatcaagtcagccatgatcgtctcaaatggaaagcggaaagtaatggttgttattcgatgcagagcgcata |
438 |
Q |
| |
|
||||||||||| | | | ||| |||| |||||||||||||| ||||||||||||||| ||| ||| ||||| |
|
|
| T |
14484488 |
tatgatcaagttaccaacgattgtcttgtttggaaagcggaaagaaatggttgttattcggtgcggagtgcata |
14484561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 72 - 449
Target Start/End: Original strand, 17177539 - 17177916
Alignment:
| Q |
72 |
atgctaacatcggtcacaatccgagttatgtttggcggagcattctgcgttcccgtttcattatccgtggaggagctagatggagtattggctctggtgc |
171 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||||||||| ||| | ||| |||| || ||| | ||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
17177539 |
atgccaacattggtcacaatccgagctatgtttggcggagtattttacgtgcccgctttattgtgcgtggtggagcaagatggagcgttggctctggtgc |
17177638 |
T |
|
| Q |
172 |
aacgatccctatccttaatgcaccatggctggctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtgactctaatgttcaaagt |
271 |
Q |
| |
|
| || ||||| ||| ||||||||||| |||| |||||| |||| || |||||||| || |||| || |||||||||||||| | ||||||||||| |
|
|
| T |
17177639 |
atatattcctattcttgatgcaccatggttggccaatggcaagtctatagatggtaaaatagctgaaggcttttatgttcgtgatttcaatgttcaaagc |
17177738 |
T |
|
| Q |
272 |
ttattatctgagcatagttaaagctggaacgcgcctcttgttcaaaacatttttagtaacgacatagctgaaaaaattatgcatacacccttgtatgatc |
371 |
Q |
| |
|
|||||||| || ||| | | || ||||||| |||||| || ||| | |||||||||| |||||||||||| | || ||||||| || |||||||| |
|
|
| T |
17177739 |
ttattatcggatcatggcaagagttggaacgtgcctctagtccaacagatttttagtactgacatagctgaagcagttttgcatacgcctcagtatgatc |
17177838 |
T |
|
| Q |
372 |
aagtcagccatgatcgtctcaaatggaaagcggaaagtaatggttgttattcgatgcagagcgcataccgcttatgtg |
449 |
Q |
| |
|
|||| | ||||| ||||||| |||||| ||||||| || |||||||||||| ||| ||| ||||| || ||||||| |
|
|
| T |
17177839 |
aagttattcatgaccgtctcatttggaaatcggaaagaaacggttgttattcggtgcggagtgcatatcgattatgtg |
17177916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 228
Target Start/End: Complemental strand, 38490324 - 38490176
Alignment:
| Q |
80 |
atcggtcacaatccgagttatgtttggcggagcattctgcgttcccgtttcattatccgtggaggagctagatggagtattggctctggtgcaacgatcc |
179 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||| ||||| |||| || ||| | ||||| || ||| | ||||||||||| ||| || || || | |
|
|
| T |
38490324 |
atcggtcacaatccgagttacgtgtggcgtagcattttgcgtgcccgatttattgtgcgtggtggggctcgttggagtattggttctagtatgacaattc |
38490225 |
T |
|
| Q |
180 |
ctatccttaatgcaccatggctggctaatggcgagtcaattgatggtaa |
228 |
Q |
| |
|
| ||||| | |||||||||||| |||| || |||| ||||||||||| |
|
|
| T |
38490224 |
caatcctcgacgcaccatggctgtctaacggtgagtttattgatggtaa |
38490176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 72 - 449
Target Start/End: Complemental strand, 27011144 - 27010767
Alignment:
| Q |
72 |
atgctaacatcggtcacaatccgagttatgtttggcggagcattctgcgttcccgtttcattatccgtggaggagctagatggagtattggctctggtgc |
171 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||||||||| ||| | ||| |||| || ||| | ||||| ||||| |||||||| ||||| | |||||| |
|
|
| T |
27011144 |
atgccaacataggtcacaatccgagctatgtttggcggagtattttacgtgcccgctttattgtgcgtggtggagcaagatggagcattggttttggtgc |
27011045 |
T |
|
| Q |
172 |
aacgatccctatccttaatgcaccatggctggctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtgactctaatgttcaaagt |
271 |
Q |
| |
|
|| || ||||| ||| ||||||| |||||||| ||||||||||| || |||||||| || |||| || |||||||||||||| | ||||||||||| |
|
|
| T |
27011044 |
aaatattcctattcttgatgcaccgtggctggccaatggcgagtctatagatggtaatatagctgaaggcttttatgttcgtgatttcaatgttcaaagc |
27010945 |
T |
|
| Q |
272 |
ttattatctgagcatagttaaagctggaacgcgcctcttgttcaaaacatttttagtaacgacatagctgaaaaaattatgcatacacccttgtatgatc |
371 |
Q |
| |
|
|||||||| || ||| | | || ||||||| |||||| || ||| | ||||||||| |||||||||||| | || ||||||| || ||||||||| |
|
|
| T |
27010944 |
ttattatcggatcatggcaagagttggaacgtgcctctagtccaacaaatttttagtgctgacatagctgaagcagttttgcatacgcctctgtatgatc |
27010845 |
T |
|
| Q |
372 |
aagtcagccatgatcgtctcaaatggaaagcggaaagtaatggttgttattcgatgcagagcgcataccgcttatgtg |
449 |
Q |
| |
|
|||| | ||||| |||| | |||||| ||||||| || ||||||||| |||||| ||| ||||| || ||||||| |
|
|
| T |
27010844 |
aagttattcatgactgtcttatttggaaatcggaaagaaacggttgttatccgatgcggagtgcatatcgattatgtg |
27010767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 166 - 421
Target Start/End: Original strand, 33479190 - 33479445
Alignment:
| Q |
166 |
tggtgcaacgatccctatccttaatgcaccatggctggctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtgactctaatgtt |
265 |
Q |
| |
|
|||||| || |||||||| ||| |||||||||| ||| ||||||| ||||| ||||||||| |||| ||| || || |||||| | || | |||||| |
|
|
| T |
33479190 |
tggtgcgactatccctattcttgatgcaccatgactgtctaatggtgagtctattgatggtcacatcattggaggcttctatgtttgcgattttaatgtc |
33479289 |
T |
|
| Q |
266 |
caaagtttattatctgagcatagttaaagctggaacgcgcctcttgttcaaaacatttttagtaacgacatagctgaaaaaattatgcatacacccttgt |
365 |
Q |
| |
|
||||| || ||| ||||||| || | || ||||||| ||||||||||| | | ||||||||||| ||||||||||| |||| |||||||| || ||| |
|
|
| T |
33479290 |
caaagcttgttacatgagcatggtaagagttggaacgagcctcttgttcgacagatttttagtaatgacatagctgatgcaattttgcatacaaccctgt |
33479389 |
T |
|
| Q |
366 |
atgatcaagtcagccatgatcgtctcaaatggaaagcggaaagtaatggttgttat |
421 |
Q |
| |
|
|||||||||||| |||||||||| ||| |||||||||||| | |||||||||||| |
|
|
| T |
33479390 |
atgatcaagtcacccatgatcgtatcatttggaaagcggaaggaaatggttgttat |
33479445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 72 - 375
Target Start/End: Complemental strand, 13701924 - 13701621
Alignment:
| Q |
72 |
atgctaacatcggtcacaatccgagttatgtttggcggagcattctgcgttcccgtttcattatccgtggaggagctagatggagtattggctctggtgc |
171 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| |||| |||| | ||||||| || ||| | |||| ||||| |||||||| || | ||||||| |
|
|
| T |
13701924 |
atgccaacattggtcacaatccgagttatgtttgacggaacattttacgttccctctttattgtgtgtggtggagcaagatggagcatcgattctggtgt |
13701825 |
T |
|
| Q |
172 |
aacgatccctatccttaatgcaccatggctggctaatggcgagtcaattgatggtaacattgctggtggtttttatgttcgtgactctaatgttcaaagt |
271 |
Q |
| |
|
|| |||||||| || ||||||||||||||| |||||| |||| ||||||| |||||| ||||| ||| |||||||| |||| | ||||||||||| |
|
|
| T |
13701824 |
aaatatccctattattgatgcaccatggctggataatggtgagtttattgatgataacatagctggaggtctttatgtttgtgatttcaatgttcaaagc |
13701725 |
T |
|
| Q |
272 |
ttattatctgagcatagttaaagctggaacgcgcctcttgttcaaaacatttttagtaacgacatagctgaaaaaattatgcatacacccttgtatgatc |
371 |
Q |
| |
|
|||||||| |||||| || | || ||||| | |||||| |||||| | ||||||||||| |||||||||||| ||| ||||||| || ||||||||| |
|
|
| T |
13701724 |
ttattatcggagcatggtaagagttggaatgtgcctctggttcaacagatttttagtaatgacatagctgaagcgattttgcatacgccactgtatgatc |
13701625 |
T |
|
| Q |
372 |
aagt |
375 |
Q |
| |
|
|||| |
|
|
| T |
13701624 |
aagt |
13701621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 424
Target Start/End: Complemental strand, 13812759 - 13812715
Alignment:
| Q |
380 |
catgatcgtctcaaatggaaagcggaaagtaatggttgttattcg |
424 |
Q |
| |
|
||||||||| ||| |||||||||||||| ||||||||||||||| |
|
|
| T |
13812759 |
catgatcgtttcatttggaaagcggaaaggaatggttgttattcg |
13812715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 42807 - 42893
Alignment:
| Q |
83 |
ggtcacaatccgagttatgtttggcggagcattctgcgttcccgtttcattatccgtggaggagctagatggagtattggctctggt |
169 |
Q |
| |
|
||||| || ||||||||||| ||||| | |||||| ||| ||||||| ||| ||||||| || ||| ||||||||||||| |||||| |
|
|
| T |
42807 |
ggtcataacccgagttatgtgtggcgcaacattcttcgtgcccgttttattgtccgtggtggcgctcgatggagtattgggtctggt |
42893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University