View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13824_low_9 (Length: 450)
Name: NF13824_low_9
Description: NF13824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13824_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 439
Target Start/End: Complemental strand, 33554949 - 33554524
Alignment:
| Q |
19 |
tttctggcacatgagttatctgaactctgtctcggtaagccgccgttgaagtctatttcaacgtcggctaccattgccgaggcaattgaagtcctcagaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33554949 |
tttctggcacatgagttatctgaactctgtctcggtaagccgccgttgaagtctatttcaacgtcggctaccattgccgaggcaattgaagtccttagaa |
33554850 |
T |
|
| Q |
119 |
gctccgacgatagtttcgtcagtgtttggagctgtgaccattctgaattcactcgttgtcaatgtgttgggaaagtttgcatggttgatgttatttgtta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33554849 |
gctccgacgatagtttcgtcagtgtttggagctgtgaccattctgaattcactcgttgtcaatgtgttgggaaagtttgcatggttgatgttatttgtta |
33554750 |
T |
|
| Q |
219 |
cctttgcaaaccagaaaatcttttgtgtccttctaaagctcttaaagctttggtttctgtagttttgcctaaggttggtggtcttgttgttcagcttgaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33554749 |
cctttgcaaaccagaaaatcttttgtgtccttctaaagctcttaatgctttggtttctgtagttttgcctaaggttggtggtcttgttgttcagcttgaa |
33554650 |
T |
|
| Q |
319 |
tcttcttctaggtacnnnnnnnatttatctttgaatcttgaaattatgttttaatgtgc-----tttagtatgatcaagattaagaattttaattaatta |
413 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33554649 |
tcttcttctaggtactttttttatatatctttgaatcttgaaattatgttttaatgtgctttagtttagtatgatcaagattaagaattttaattaatta |
33554550 |
T |
|
| Q |
414 |
accctcattcttgttattttgatgat |
439 |
Q |
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| T |
33554549 |
acccttattcttgttattttgatgat |
33554524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 33542564 - 33542247
Alignment:
| Q |
19 |
tttctggcacatgagttatctgaactctgtctcggtaagccgccgttgaagtctatttcaacgtcggctaccattgccgaggcaattgaagtcctcagaa |
118 |
Q |
| |
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|||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| | || |||||||||||||||||| | | |
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| T |
33542564 |
tttctgtcacatgagttatctgatctctgtctcggtaagccgccgttgaagtcgctttcgacgtcggctaccgtcgctgaggcaattgaagtcctccgta |
33542465 |
T |
|
| Q |
119 |
gctccgacg---atagtttcgtcagtgtttggagctgtgaccattctgaattcactcgttgtcaatgtgttgggaaagtttgcatggttgatgttatttg |
215 |
Q |
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| T |
33542464 |
gctccggcggcgaaagtttcgtcagtgtttggaactgtgaccactctgaattcggtcaatgtcaatgtgttgggaaaatttgtatggttgatgttattgt |
33542365 |
T |
|
| Q |
216 |
ttacctttgcaaaccagaaaatcttttgtgtccttctaaagctcttaaagctttggtttctgtagttttgcctaaggttggtggtcttgttgttcagctt |
315 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||||||||| |||| |||| ||||| | |||||| ||||||||||||||| || |
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| T |
33542364 |
tttcctttgcaaacaggaaaatcttttgtgtccttctaaagctcttaaggcttccatttccaatgttttcaatgaggttgatggtcttgttgttcatcta |
33542265 |
T |
|
| Q |
316 |
gaatcttcttctaggtac |
333 |
Q |
| |
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||| |||| ||||||||| |
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| T |
33542264 |
gaaccttcatctaggtac |
33542247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 48314738 - 48314666
Alignment:
| Q |
175 |
tgtcaatgtgttgggaaagtttgcatggttgatgttatttgttacctttgcaaaccagaaaatcttttgtgtc |
247 |
Q |
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||||||||||||||||||| | ||| ||||| ||||||||||| ||||||||| || ||||| | |||||| |
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| T |
48314738 |
tgtcaatgtgttgggaaagcatttatgattgattttatttgttacatttgcaaacaaggaaatcctgtgtgtc |
48314666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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