View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13825_high_11 (Length: 368)
Name: NF13825_high_11
Description: NF13825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13825_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 42737710 - 42738061
Alignment:
| Q |
1 |
attattctatcagataaaattaaagcagcacactgtgccactaattgttaagctcaaaagatagattgcatcgctataattcagtagttgctcgaatgaa |
100 |
Q |
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| T |
42737710 |
attattatatcagataaaattaaagcagcacactgtgccactaattgctaagctcaaaagatagattgcatcgctataatttagtagttgctcgaatgaa |
42737809 |
T |
|
| Q |
101 |
atattttactgaatgtccaatgtgcaagcactttcccatatatctatccaaaaataatttgaatttgttgcaatagatacacaagatagatactatgtta |
200 |
Q |
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| T |
42737810 |
atattttactgaatgtccaatgtgcaagcactttcccatatatctatccaaaaataatttgaatttgttgcaacagatacacaagatagatactatgtta |
42737909 |
T |
|
| Q |
201 |
tgtaccctacaacttttctcaaaacggagacaccacttggtggagccaaaggatcgcaatatgttagtaatctttattttaattttacaatgttaatttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
42737910 |
tgtaccctacaacttttctcaaaacggagacaccacttggtggagccaaaggatcgcaatatgttactaatctttattttaattttgcaatgttaatttg |
42738009 |
T |
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| Q |
301 |
ttctattgacaattatgcaattttctaatgtacacttccttagccaactaat |
352 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42738010 |
ttatattgacaattatgcaattttctaatgtacacttccttagccaactaat |
42738061 |
T |
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