View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13825_high_5 (Length: 544)
Name: NF13825_high_5
Description: NF13825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13825_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 19 - 527
Target Start/End: Original strand, 32664294 - 32664802
Alignment:
| Q |
19 |
atccaacagatccaatgattgcaccaaccttaccaacagccccagaaataccatgacatgttgacctgaacctagctggaaagagttcagctgggacaat |
118 |
Q |
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| T |
32664294 |
atccaacagatccaatgattgcaccaaccttaccaacagccccagaaataccatgacatgttgacctgaacctagctggaaagagttcagctgggacaat |
32664393 |
T |
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| Q |
119 |
aaaggtggtagtgttaggtccaaaatttgcaaagaagaaagcaagaccatagataaccatgaaccctttgttatcatgattttctcctttggtccaatga |
218 |
Q |
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| T |
32664394 |
aaaggtggtagtgttaggtccaaaatttgcaaagaagaaagcaagaccatagataaccatgaaacctttgttatcatgattttctcctttggtccaatga |
32664493 |
T |
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| Q |
219 |
gagtaatagggaaaccctaaagcaaaaaatgacactgccatgaagaaaaaacccatcatttggattttaactcttcccacacgatcgatgaagtagacgg |
318 |
Q |
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| T |
32664494 |
gagtaatagggaaaccctaaagcaaaaaatgacactgccatgaagaaaaaacccatcatttggattttaactcttcccacacgatcgatgaagtagacgg |
32664593 |
T |
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| Q |
319 |
tgaagaagtagccgggaatggtggagcaaacagcaagaatggcttggattcttgcaagatggaaagcctcttgatacacatcttcatcatctttttcgtt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32664594 |
tgaagaagtagccgggaatggtggagcaaacagcaagaatggcttggattcttgcaagatggaaagcctcttgatacacatcttcatcatctttttcgtt |
32664693 |
T |
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| Q |
419 |
gaggtatcgtttgtatatttcactttggaatagaacttggctgtagaacactatgtctaagagaaaccaattagcagaacatgcgaaaagatcgctaccg |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32664694 |
gaggtatcgtttgtatatttcactttggaatagaacttggctgtagaacactatgtctaagagaaaccaattagcagaacatgcgaaaagatcgcgaccg |
32664793 |
T |
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| Q |
519 |
tgtcgccac |
527 |
Q |
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| T |
32664794 |
tgtcgccac |
32664802 |
T |
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