View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13825_high_9 (Length: 395)

Name: NF13825_high_9
Description: NF13825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13825_high_9
NF13825_high_9
[»] chr2 (12 HSPs)
chr2 (20-380)||(2321549-2321931)
chr2 (22-241)||(2294236-2294464)
chr2 (22-215)||(2303849-2304046)
chr2 (22-120)||(2310567-2310665)
chr2 (31-119)||(2351434-2351522)
chr2 (20-120)||(2327402-2327502)
chr2 (261-380)||(2294512-2294632)
chr2 (261-331)||(2339306-2339375)
chr2 (34-101)||(2331131-2331198)
chr2 (261-298)||(2304241-2304278)
chr2 (261-333)||(2331412-2331484)
chr2 (139-244)||(2327562-2327664)
[»] chr8 (2 HSPs)
chr8 (32-105)||(41127444-41127517)
chr8 (32-105)||(26507056-26507129)


Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 380
Target Start/End: Original strand, 2321549 - 2321931
Alignment:
Q  20 cggagggcggccatgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcctagggtatag-------- 111  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  2321549 cggagggtggccatgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcctagggtatagattatgtg 2321648  T
Q  112 -gttatgtgtaacgatttggagtatgtaatgttgttgtgtgaaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtg 210  Q
     ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321649 tgttatgtgtaacgatttggagtatgtaatgttgt---gtgaaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtg 2321745  T
Q  211 gatttctcatatggtgggattttgtttcatacaat--------------acaatgatc--ccttacttcttatatatcttgtttcttgtataaaataaaa 294  Q
    ||||||||||||||| |||||||||||||||||||              ||| | ||   ||||||||||||||||||||||||||||||||||||||||    
T  2321746 gatttctcatatggtcggattttgtttcatacaatgatcccttatgcatacattcatatgccttacttcttatatatcttgtttcttgtataaaataaaa 2321845  T
Q  295 catgtctgtcattcttgtaagtcaagatactttcaatgtataaaaaatatgatcttgtttttgtaatatcaaagttgttttatttt 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321846 catgtctgtcattcttgtaagtcaagatactttcaatgtataaaaaatatgatcttgtttttgtaatatcaaagttgttttatttt 2321931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 2294236 - 2294464
Alignment:
Q  22 gagggcggccatgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcctagggtataggttatgtgt- 120  Q
    |||||||| |||||||||||| |||||| | | |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||     
T  2294236 gagggcgggcatgttgatttgacggaaatacaagaattcaccatggtgatgaaaaatccattgcaagttcatatttctcctaggatatagattatgtgtg 2294335  T
Q  121 --------aacgatttggagtatgtaatgttgttgtgtgaaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtgga 212  Q
            |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  2294336 ttatatgtaacgatgtggagtatgtaatgttgttgtgtgaaccaccctagattctctgcttgagaatgtcataacacagcaggggagtattatatgtgga 2294435  T
Q  213 tttctcatatggtgggattttgtttcata 241  Q
    ||| |||||||||||||||||||||||||    
T  2294436 tttgtcatatggtgggattttgtttcata 2294464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 2303849 - 2304046
Alignment:
Q  22 gagggcggccatgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcctagggtataggttatgtgta 121  Q
    ||||||||| |||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |     
T  2303849 gagggcggctatgttgatttgtcggaaaaacaagaattcaatatggtgatgaaaaatccattgcaagttcatatttctcctaggatatagattatgt-tt 2303947  T
Q  122 acgatttggagt-----atgtaatgttgttgtgtgaaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtggattt 215  Q
       || || | |     ||   |||||  ||||||||||||||||||||||||||||||||||||||||||||| ||  | ||||||||||||||||||    
T  2303948 tttatgtgtaatgataaatcgtatgttcctgtgtgaaccactctagattctctgcttgagaatgtcataacacagcaaagaaatattatatgtggattt 2304046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 2310567 - 2310665
Alignment:
Q  22 gagggcggccatgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcctagggtataggttatgtgt 120  Q
    |||||||| |||||||||||| |||||| | | ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  2310567 gagggcgggcatgttgatttgacggaaatacaagaattcactatggtgatgaaaaatccagtgcaagttcatatttctcctaggatatagattatgtgt 2310665  T

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Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 2351434 - 2351522
Alignment:
Q  31 catgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcctagggtataggttatgtg 119  Q
    ||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||    
T  2351434 catgttgatttgtcggaaaaacaagaattcactgtggtgatgaaaaatccattgcaagttcgtatttctcctaggatatagtttatgtg 2351522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 2327402 - 2327502
Alignment:
Q  20 cggagggcggccatgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcctagggtataggttatgtg 119  Q
    ||||||| |||||||| |||||||| ||||||  |||||||||  |||||||||||||||||||||||||||||||||||| |||  ||||| |||||||    
T  2327402 cggagggtggccatgtcgatttgtcagaaaaatttgaattcaccgtggtgatgaaaaatccattgcaagttcatatttctcatagaatatagattatgtg 2327501  T
Q  120 t 120  Q
    |    
T  2327502 t 2327502  T

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Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 261 - 380
Target Start/End: Original strand, 2294512 - 2294632
Alignment:
Q  261 ttcttatatatcttgtttcttgtataaaataaaacat-gtctgtcattcttgtaagtcaagatactttcaatgtataaaaaatatgatc-ttgtttttgt 358  Q
    ||||||||||||||||||| ||||||||  ||||| | | |||||||||||||||||||||||||||||| |||| |||| |||||||| ||||| | ||    
T  2294512 ttcttatatatcttgtttcctgtataaataaaaactttgcctgtcattcttgtaagtcaagatactttcattgta-aaaatatatgatctttgttgtagt 2294610  T
Q  359 aatatcaaagttgttttatttt 380  Q
    |||||  |||||| ||||||||    
T  2294611 aatattgaagttggtttatttt 2294632  T

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Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 261 - 331
Target Start/End: Original strand, 2339306 - 2339375
Alignment:
Q  261 ttcttatatatcttgtttcttgtataaaataaaacatgtctgtcattcttgtaagtcaagatactttcaat 331  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||||| ||||| |||||||||||||||    
T  2339306 ttcttatatatctcgtttcttgtataaaataaaacatgtttggcattctggtaag-caagatactttcaat 2339375  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 2331131 - 2331198
Alignment:
Q  34 gttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcc 101  Q
    ||||||||||| || ||| | |||||||||||||| ||||||||||||||||| | ||||||||||||    
T  2331131 gttgatttgtcagagaaacaggaattcactatggtcatgaaaaatccattgcaggctcatatttctcc 2331198  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 2304241 - 2304278
Alignment:
Q  261 ttcttatatatcttgtttcttgtataaaataaaacatg 298  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2304241 ttcttatatatcttgtttcttgtataaaataaaacatg 2304278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 261 - 333
Target Start/End: Original strand, 2331412 - 2331484
Alignment:
Q  261 ttcttatatatcttgtttcttgtataaaataaaacatgtctgtcattcttgtaagtcaagatactttcaatgt 333  Q
    |||||| |||||||||||||| ||||||||||||||||  || | |||||| ||| |||||||| ||||||||    
T  2331412 ttcttacatatcttgtttcttatataaaataaaacatgcatgaccttcttgcaagccaagatacattcaatgt 2331484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 2327562 - 2327664
Alignment:
Q  139 atgttgttgtgtgaaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtggatttctcata-tggtgggattttgttt 237  Q
    ||||||||||||||||||  ||||||||||| ||||  |||||||||||   |||| |||||||||||||| ||||| ||| | ||||  ||||||| ||    
T  2327562 atgttgttgtgtgaaccatcctagattctct-cttggcaatgtcataac---acagcggaatattatatgtagatttgtcacattggtaagattttgctt 2327657  T
Q  238 catacaa 244  Q
    |||||||    
T  2327658 catacaa 2327664  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 41127444 - 41127517
Alignment:
Q  32 atgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcctagg 105  Q
    ||||||||||||||||||||  |||||||||  |||| |||||||||||| |||||||||||||||||||||||    
T  41127444 atgttgatttgtcggaaaaaactgaattcaccgtggttatgaaaaatccactgcaagttcatatttctcctagg 41127517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 26507056 - 26507129
Alignment:
Q  32 atgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcctagg 105  Q
    ||||||||||||| |||||| | ||||| ||||||||||||||| |||||||| ||| ||| || |||||||||    
T  26507056 atgttgatttgtcagaaaaacaggaatttactatggtgatgaaatatccattggaagctcaaatatctcctagg 26507129  T

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