View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13825_low_1 (Length: 622)
Name: NF13825_low_1
Description: NF13825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13825_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 37301724 - 37301325
Alignment:
| Q |
1 |
agtaaaattgctttgtttatagtgtatgatgtatttattctatactaagcttatatgaagtcatcatcttatatgattttatgttagcatacgtctagtt |
100 |
Q |
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| T |
37301724 |
agtaaaattgctttgtttatagtgtatgatgtatttattctatactaagcttatatgaagtcatcatcttatatgattttatgttagcatacgtctagtt |
37301625 |
T |
|
| Q |
101 |
tctactctccatcatcttatatcaattgctttgaattgcataaatacatctttgtcaatttgctaaacaaagtgtgacaccgactccaccttttaatgaa |
200 |
Q |
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| T |
37301624 |
tctactctccatcatcttatatcaattgctttgaattgcataaatacatctttgtcaatttgctaaacaaagtgtgacaccgactccaccttttaatgaa |
37301525 |
T |
|
| Q |
201 |
gactctataataacttttgcatgaaattttgttcccnnnnnnnatcttatgtcatctgactttttcataaattattgtcaaattattatacaatca--tg |
298 |
Q |
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| T |
37301524 |
gactctataataacttttgcatgaaattttgttccctttttttatcttatgtcatctgactttttcataaattattgtcaaattattatacaatcatgtg |
37301425 |
T |
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| Q |
299 |
tatagtttttcttacaaattaggg--nnnnnnnnnngttcaagagtacattttttactactacataaaatattcaattacacaatattggacactttaag |
396 |
Q |
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| T |
37301424 |
tatagtttttcttacaaattagggttttttttttttgttcaagagtacattttttactacaacataaaatattcaattacacaatattggacactttaag |
37301325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 428 - 604
Target Start/End: Complemental strand, 37301293 - 37301117
Alignment:
| Q |
428 |
ggctacgaaattcttgaacaannnnnnngctgactaataatattaccatcttcattttgatcttcatcttgatttaataaattatttacatgtgattcat |
527 |
Q |
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| T |
37301293 |
ggctacgaaattcttgaacaatttttttgctgactaataatattaccatcttcattttgatcttcatcttgatttaataaattatttacatgttattcat |
37301194 |
T |
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| Q |
528 |
ctaactaattttcaactctcgaaaacagtgggatatcctttccaatggtggagttgtccaagaaatggcacatattg |
604 |
Q |
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| T |
37301193 |
ctaactaattttcaactctcgaaaacagtgggatatcctttccaatggtggagttgtccaagaaatggcacatattg |
37301117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 551 - 596
Target Start/End: Original strand, 16828554 - 16828599
Alignment:
| Q |
551 |
aacagtgggatatcctttccaatggtggagttgtccaagaaatggc |
596 |
Q |
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| T |
16828554 |
aacagtgggatattctttctaatggtggagttgtccaagaaatggc |
16828599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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