View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13825_low_10 (Length: 395)
Name: NF13825_low_10
Description: NF13825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13825_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 36984581 - 36984203
Alignment:
| Q |
1 |
aacagcagagtgacacagttagtgtagaggttcca--gagttctactattgcgcaaaaggaagtgcagaaagagtgggcatgttctttatgtttggtaac |
98 |
Q |
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| T |
36984581 |
aacagcagagtgacacagttggtgtagaggttccacagagttctactattgcgcaaaaggaagtgcagaaagagtgggcatgtgctttatgtttggtaac |
36984482 |
T |
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| Q |
99 |
agttccatgtgagaaaacattgaattcccatcttaatgggaggaaacacaaagctgcttgtgaagcagctttgaaagcaaagaagctaaaaatctacaag |
198 |
Q |
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| T |
36984481 |
agttccatgtgaaaaaacattgaattcccatcttaatgggaggaaacacagagctgcttgtgaagcagctttgaaagcaaagaagctaaaaatctacaag |
36984382 |
T |
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| Q |
199 |
gccaaagaggaggtgaaacagaagaattttagcaataggttaaattctgatgttgagaatggaggtggtattgttaacaacaggttgaagggaccagtaa |
298 |
Q |
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| T |
36984381 |
gccaaagaggaggtgaaacaggagaattttagcaataagttaaattctgatgttgagaatggaggtggtattgttaacaacaggttgaagggaccagtaa |
36984282 |
T |
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| Q |
299 |
ggatgcaaaagctccatttcataggacccacaccttctccacaagctctcagtggaccaacacctttcggtggaccaac |
377 |
Q |
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| T |
36984281 |
ggatgcaaaagctccatttcataggacccacaccttctccacaagctctcagtggaccaacacctttcggtggaccaac |
36984203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 55 - 184
Target Start/End: Complemental strand, 36979898 - 36979769
Alignment:
| Q |
55 |
aaggaagtgcagaaagagtgggcatgttctttatgtttggtaacagttccatgtgagaaaacattgaattcccatcttaatgggaggaaacacaaagctg |
154 |
Q |
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| T |
36979898 |
aaggaagtgccgaaagagtggacttgtgctttatgtttggtaacaacttcgagccagataaccttgaattctcatattaatgggaggaaacacagagctg |
36979799 |
T |
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| Q |
155 |
cttgtgaagcagctttgaaagcaaagaagc |
184 |
Q |
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| T |
36979798 |
cttgtgaagcagctttgaaagcaaagaagc |
36979769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 36978979 - 36978913
Alignment:
| Q |
118 |
ttgaattcccatcttaatgggaggaaacacaaagctgcttgtgaagcagctttgaaagcaaagaagc |
184 |
Q |
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| T |
36978979 |
ttgaattcccatcttaatgggaggaaacacagggctagttgtgaagctgctttgaaagcaaagaagc |
36978913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 36995803 - 36995730
Alignment:
| Q |
55 |
aaggaagtgcagaaagagtgggcatgttctttatgtttggtaacagttccatgtgagaaaacattgaattccca |
128 |
Q |
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| T |
36995803 |
aaggcagtgcagaaagagtggacttgtgctttatgtttggtaacggttacgtgtgagaaaaccttgatttccca |
36995730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 37000454 - 37000387
Alignment:
| Q |
109 |
gagaaaacattgaattcccatcttaatgggaggaaacacaaagctgcttgtgaagcagctttgaaagc |
176 |
Q |
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| T |
37000454 |
gagaaaactttgaattcccacctcaatgggaggaaacacaaggctaattgtgaattagctttgaaagc |
37000387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 156
Target Start/End: Complemental strand, 36986340 - 36986218
Alignment:
| Q |
34 |
cagagttctactattgcgcaaaaggaagtgcagaaagagtgggcatgttctttatgtttggtaacagttccatgtgagaaaacattgaattcccatctta |
133 |
Q |
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| T |
36986340 |
cagagttctacttctacacagaaggaagtgcagaaagagtggacttgtgctttatgtttggtaacaacaacgagtgagaaaatcttgaattcccacctga |
36986241 |
T |
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| Q |
134 |
atgggaggaaacacaaagctgct |
156 |
Q |
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| T |
36986240 |
gtggaaagaaacacagagctgct |
36986218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 36978900 - 36978817
Alignment:
| Q |
179 |
agaagctaaaaatctacaaggccaaagaggaggtgaaacagaagaattttagcaataggttaaattctgatgttgagaatggag |
262 |
Q |
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| T |
36978900 |
agaagctgaacatctatcagtccaaagaggaggtgaaacagaaggatgttagcaataagttcaattccaatgttaagagtggag |
36978817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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