View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13825_low_12 (Length: 322)
Name: NF13825_low_12
Description: NF13825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13825_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 28101516 - 28101811
Alignment:
| Q |
18 |
atatgtaggccaactatgaccaatctatactnnnnnnnnnctatgctaataaaaagagcacaactcagatgaaagctcctaaaaactcaaacatttatgt |
117 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28101516 |
atatgtaggccaactatgaccaatctatactaaaaaaaaactatgctaataaaaagagcacaactcagatgaaagctcctaaaaactcaaacatttatgt |
28101615 |
T |
|
| Q |
118 |
gggctaaccaagcactccatatgtgttaaatgactatgcctagaaacataaagtcatgttttccaatgcttacgaggttccacgcaaactgtatcattag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28101616 |
gggctaaccaagcactccatatgtgttaaatgactatgcctagaaacataaagtcatgttttccaatgcttacgaggttccacgcaaactgtatcattag |
28101715 |
T |
|
| Q |
218 |
gatgtgttgatattgagatttttcttggatctagtatttattctagcagaacttgcttcagccacagacttggggcttttctgttttttattcttc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28101716 |
gatgtgttgatattgagatttttcttggatctagtatttattctagcagaacttgcttcagccacagacttggggcttttctgttttttattcttc |
28101811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 36906489 - 36906194
Alignment:
| Q |
18 |
atatgtaggccaactatgaccaatctatactnnnnnnnnnctatgctaataaaaagagcacaactcagatgaaagctcctaaaaactcaaacatttatgt |
117 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
36906489 |
atatgtaggccaactatgaccaatctatactaaaacaaaaatatgctaataaaaagagcacaactcagaagaaagctcctaaagactcaaacatttatgt |
36906390 |
T |
|
| Q |
118 |
gggctaaccaagcactccatatgtgttaaatgactatgcctagaaacataaagtcatgttttccaatgcttacgaggttccacgcaaactgtatcattag |
217 |
Q |
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||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| ||||| || ||||||| |
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| T |
36906389 |
gggctaaccaagccctccatttgtgttaaatgactctgcctagaaacataaagtcatgttttccaatgtctatgaggttccacacaaacggtttcattag |
36906290 |
T |
|
| Q |
218 |
gatgtgttgatattgagatttttcttggatctagtatttattctagcagaacttgcttcagccacagacttggggcttttctgttttttattcttc |
313 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||| |
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| T |
36906289 |
gatgtggtgatattgagatttttcttggatcttgtatttattctagcagaacttgcttcagccatagacttggggctcttctgtttttaattcttc |
36906194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 3248267 - 3248533
Alignment:
| Q |
18 |
atatgtaggccaactatgaccaatctatactnnnnnnnnnctatgctaataaaaagagcacaactcagatgaaagctcctaaaaactcaaacatttatgt |
117 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3248267 |
atatgcaggccaactatgaccaatctttaccgaaacaaatctatgctaataataagagcacaactcagatgaaagctcctaaaaactcagacatttatga |
3248366 |
T |
|
| Q |
118 |
gggctaaccaagcactccatatgtgttaaatgactatgc-ctagaaacataaagtcatgttttccaatgcttacgaggttccacgcaaactgtatcatta |
216 |
Q |
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| |||||||||| ||| || | |||||||||||| ||| |||||||||||||||| ||||||||||||| || ||| |||||| ||||| || |||||| |
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| T |
3248367 |
gtgctaaccaagtcctctatttatgttaaatgactctgctctagaaacataaagtcctgttttccaatgcatatgagattccacacaaacagtttcatta |
3248466 |
T |
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| Q |
217 |
ggatgtgttgatattgagatttttcttggatctagtatttattctagcagaacttgcttcagccaca |
283 |
Q |
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|||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
3248467 |
ggatgtgttgatattggaatttttcttggatcttgtattttttctagcagaacttgcttcagccaca |
3248533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 35554002 - 35554295
Alignment:
| Q |
18 |
atatgtaggccaactatgaccaatctatactnnnnnnnnnctatgctaataaaaagagcacaactcagatgaaagctcctaaaaactcaaacatttatgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
35554002 |
atatgtaggccaactatgaccaatctatactaaaacaaaattatgctaataaaaagagcacaactcagatgaaagcttctaaagactcaaacatttatgt |
35554101 |
T |
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| Q |
118 |
gggctaaccaagcactccatatgtgttaaatgactatgcctagaaacataaagtcatgttttccaatgcttacga-ggttccacgcaaactgtatcatta |
216 |
Q |
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||||||||||||| |||||| |||||||||||||| ||||||||||||| ||| ||||||||||| ||| || || ||| |||| ||||| || |||||| |
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| T |
35554102 |
gggctaaccaagccctccatttgtgttaaatgactctgcctagaaacat-aagccatgttttccattgcctatgagggtcccacacaaacggtttcatta |
35554200 |
T |
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| Q |
217 |
ggatgtgttgatattgagatttttcttggatctagtatttattctagcagaacttgcttcagccacagacttggggcttttctgttttttattcttc |
313 |
Q |
| |
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||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35554201 |
gga--tggtgatattgagatttttcttggatcttgtatttattctagcagaacttgcttcagccatagacttggggcttttctgttttttattcttc |
35554295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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