View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13825_low_13 (Length: 303)
Name: NF13825_low_13
Description: NF13825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13825_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 42201348 - 42201621
Alignment:
| Q |
12 |
atgaagtccttaacaaggtaagtcaaaagtattttttgaaattgcctaactgaggattgataccacaaacaacatacactttgnnnnnnnctaacagatg |
111 |
Q |
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| T |
42201348 |
atgaagtccttaacaaggtaagtcaaaagtattttttgaaattgcctaacagaggattgataccacaaacaacatacactttgttttat-ctaacagatg |
42201446 |
T |
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| Q |
112 |
gacaaaggaagaatacgaatactattgggatcagcaattggaggtttaaccaatttaaccactaatattcagaatcatgttcaaaagggagttaagaaag |
211 |
Q |
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| T |
42201447 |
gacaaaggaagaataggaatactatagggatcagcaattggaggtttaaccaatttaaccactaatattcagaatcatgttcaaaagggagttaagaaag |
42201546 |
T |
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| Q |
212 |
tttctccattggccattccatataccatcaccaacatgggtggtgctttgctggctatagaaactggcctaatgg |
286 |
Q |
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| T |
42201547 |
tttctccattggccattccatataccatcaccaacatgggtggtgctttgctggctatagaaactggcctaatgg |
42201621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 42195391 - 42195427
Alignment:
| Q |
12 |
atgaagtccttaacaaggtaagtcaaaagtatttttt |
48 |
Q |
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| T |
42195391 |
atgaagtccttaacaatgtaagtcaaaggtatttttt |
42195427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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