View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13825_low_14 (Length: 224)
Name: NF13825_low_14
Description: NF13825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13825_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 5 - 207
Target Start/End: Complemental strand, 11526961 - 11526754
Alignment:
| Q |
5 |
ataatactaaaagccttggatacaaaa-aacaccaatgtataatacaccaaacaaccaagaccataccagtcagagattcttcactccatgaatcaaaaa |
103 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11526961 |
ataatactaaaagccttggatacaaaacaacaccaatgtataatacaccaaacaaccaagaccataccagtcagagattcttcactccatgaatcaaaaa |
11526862 |
T |
|
| Q |
104 |
caaaacacaacatt----ggtacaatataaaacaaatcaactctgctcattaaggatgcatttgtcgcaacttttaaaataaatataatttgtctagaga |
199 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11526861 |
caaaacacaacattaattggtacaatataaaacaaattaactctgctcattaaggatgcatttgtcgcaacttttaaaataaatataatttgtctagaga |
11526762 |
T |
|
| Q |
200 |
ttttgaag |
207 |
Q |
| |
|
|||||||| |
|
|
| T |
11526761 |
ttttgaag |
11526754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 38088322 - 38088468
Alignment:
| Q |
5 |
ataatactaaaagccttggatacaaaa-aacaccaatgtataatacaccaaacaaccaagaccataccagtcagagattcttcactccatgaatcaaaaa |
103 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||| ||| ||| ||||||||||| ||||||||| |
|
|
| T |
38088322 |
ataatactaaaagccccggatacaaaacaacaccaatgta-aatacaccaaacaaccaaaaccttac-----------tcttcactccacaaatcaaaaa |
38088409 |
T |
|
| Q |
104 |
caaaacacaacattggtacaatataaaacaaatcaactctgctcattaaggatgcatttgtcgcaa |
169 |
Q |
| |
|
||| | ||||||||||| |||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
38088410 |
caa-------ctttggtacaatagaaaacaaatcaactctacaaattaaggatgcatttgtcgcaa |
38088468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University