View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13825_low_16 (Length: 209)
Name: NF13825_low_16
Description: NF13825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13825_low_16 |
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| [»] scaffold0428 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 129; Significance: 6e-67; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 33384876 - 33384696
Alignment:
| Q |
17 |
aaaaggtacattacatctgcaattcatcaaggttacatctaaggttacgacagnnnnnnnnnnnnatctaaaactgtgaccttgttgtactgatcattga |
116 |
Q |
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| T |
33384876 |
aaaaggtacattacatcttcaattcatcaaggtttcatctaaggttacgacagttttttgtttttatctaaaactgtgaccttgttgtactgatcattga |
33384777 |
T |
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| Q |
117 |
ttgattgtgtactaaaaattgtaacagaagtcggctaagaataaagttggttcagtgttgtaaatatttttgaagaataat |
197 |
Q |
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| T |
33384776 |
ttgattgtgtactaaaaactgtaacagaagtcggctaagaataaagttggttcagtgttgtaaatatttttgaagactaat |
33384696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 33259142 - 33259061
Alignment:
| Q |
112 |
attgattgattgtgtactaaaaattgtaacagaagtcggctaagaat-aaagttggttcagtgttgtaaatatttttgaaga |
192 |
Q |
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| T |
33259142 |
attgcttgattatgtactaaaaactgtaacagaagtcggctaggaatgaaagttggttcagtgttgtaaatatttttaaaga |
33259061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 33259322 - 33259280
Alignment:
| Q |
17 |
aaaaggtacattacatctgcaattcatcaaggttacatctaag |
59 |
Q |
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| T |
33259322 |
aaaaggtacatttcatcttcaattcatcaaggttacatctaag |
33259280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 3263 - 3182
Alignment:
| Q |
112 |
attgattgattgtgtactaaaaattgtaacagaagtcggctaagaat-aaagttggttcagtgttgtaaatatttttgaaga |
192 |
Q |
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| T |
3263 |
attgcttgattatgtactaaaaactgtaacagaagtcggctaggaatgaaagttggttcagtgttgtaaatatttttaaaga |
3182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 3443 - 3401
Alignment:
| Q |
17 |
aaaaggtacattacatctgcaattcatcaaggttacatctaag |
59 |
Q |
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| T |
3443 |
aaaaggtacatttcatcttcaattcatcaaggttacatctaag |
3401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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