View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13825_low_3 (Length: 580)
Name: NF13825_low_3
Description: NF13825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13825_low_3 |
 | |
|
| [»] scaffold0244 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 565
Target Start/End: Complemental strand, 40644914 - 40644349
Alignment:
| Q |
1 |
ctccaaatgagtttatcatcaatgtcatgatgaatggtaatgctctgaatacagtcatggtaaagtatactagaaatctaaattaactcttctagacaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40644914 |
ctccaaatgagtttatcatcaatgtcatgatgaatggtaatgctatgaatacagtcatggtaaagtatactagaaatctaaattaactcttctagacaac |
40644815 |
T |
|
| Q |
101 |
ataggaaatttgaggtatttacctagctgagaagtatggttaagctgaagatgagactcatgtttacacttcttaggccgagacacatttgaagaggtca |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40644814 |
ataggaaatttgaggtacttacctagctgagaagtatggttaagctgaagaaaagactcatgtttacacttcttaggccgagacacatttgaagaggtca |
40644715 |
T |
|
| Q |
201 |
taaactttgaattcttaaattgatcttgaatcatgaaacatatnnnnnnnnttgcagcacatctcgaaccaacttaactggagagcctttgtctttagta |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40644714 |
taaactttgaattctgaaattgatcttgaatcatgaaacatataaaaaaatttgcagcacatctcgaaccaacttaactggagagcctttgtctttagta |
40644615 |
T |
|
| Q |
301 |
aagagaatgcatccattagcaaataagaggtgagagaaattaggaccttcacaaaaaa-tctttatcggcttgcaaatattgttatgaaccagatgttgg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40644614 |
aagagaatgcatccattagcaaataagaggtgagagaaattaggaccttcacaaaaaaatctttatcggcttgcaaatattgttatgaaccggatgttgg |
40644515 |
T |
|
| Q |
400 |
atcataagtgacannnnnnnccatgcatagaagaaataaataaggtgggagtaaatctccttatcttaaacccctttaggtttgaagctttcaagttttt |
499 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40644514 |
atcataagtgacatttttttccatgcatagaagaaataaataaggtgggagtaaatctccttatcttaaacccctttaggtttgaaactttcaagttttt |
40644415 |
T |
|
| Q |
500 |
caccattccattcaaattaataatggaagaaggagacccaaatttagtaaaggttaatctcaaaaa |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40644414 |
caccattccattcaaattaataatggaagaaggagacccaaatttagtaaaggttaatctcaaaaa |
40644349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 13450762 - 13450691
Alignment:
| Q |
85 |
aactcttctagacaacataggaaatttgaggtatttacctagctgagaagtatggttaagctgaagatgaga |
156 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| | |||||||| ||||| |||||||| | ||||||| |||| |
|
|
| T |
13450762 |
aactctactagacaacataggaaattcaaggcacttacctagatgagaggtatggttgaactgaagaagaga |
13450691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 502
Target Start/End: Complemental strand, 12670919 - 12670667
Alignment:
| Q |
252 |
ttgcagcacatctcgaaccaacttaactggagagcctttgtctttagtaaagagaatgcatccattagcaaataagaggtgagagaaattaggaccttca |
351 |
Q |
| |
|
|||| |||||||| | |||| ||||||| || ||| |||| | ||||||||||||| | ||| | |||||| || ||||||| || || ||||||| |
|
|
| T |
12670919 |
ttgctgcacatcttggaccaccttaacttgaaagcttttggcattagtaaagagaaggttgtcatcaacaaataggaagtgagagtaactatcaccttca |
12670820 |
T |
|
| Q |
352 |
caaaaaatctttatcggcttgcaaatattgttatgaaccagatgttggatcataagtgaca-nnnnnnnccatgcatagaagaaataaataaggtgggag |
450 |
Q |
| |
|
| | |||||||||| ||||| | ||||||||||| |||| ||||||||| |||||| || | |||||||| ||| |||||||||||||| || |
|
|
| T |
12670819 |
cgagaaatctttattggcttcctaatattgttattaacccgatgttggaccataagagatattttttctccatgcattgaaaaaataaataaggtgaaag |
12670720 |
T |
|
| Q |
451 |
taaatctccttatcttaaacc-cctttaggtttgaagctttcaagtttttcac |
502 |
Q |
| |
|
| ||| ||||||||| |||| |||||||||||| |||| ||||||||||| |
|
|
| T |
12670719 |
tggatccccttatcttgaaccttttttaggtttgaaactttaaagtttttcac |
12670667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 420 - 509
Target Start/End: Original strand, 1261279 - 1261369
Alignment:
| Q |
420 |
ccatgcatagaagaaataaataaggtgggagtaaatctccttatcttaaacccct-ttaggtttgaagctttcaagtttttcaccattcca |
509 |
Q |
| |
|
||||||| |||| |||||||||||||| ||| |||||||| || ||||||||| || |||||||| || |||||||||||||||||||| |
|
|
| T |
1261279 |
ccatgcaaagaacaaataaataaggtgatagtggatctccttgtcgtaaacccctctttggtttgaaactatcaagtttttcaccattcca |
1261369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 420 - 509
Target Start/End: Original strand, 15963 - 16053
Alignment:
| Q |
420 |
ccatgcatagaagaaataaataaggtgggagtaaatctccttatcttaaacccct-ttaggtttgaagctttcaagtttttcaccattcca |
509 |
Q |
| |
|
||||||| |||| |||||||||||||| ||| |||||||| || ||||||||| || |||||||| || |||||||||||||||||||| |
|
|
| T |
15963 |
ccatgcaaagaacaaataaataaggtgatagtggatctccttctcgtaaacccctctttggtttgaaactatcaagtttttcaccattcca |
16053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 840922 - 840859
Alignment:
| Q |
1 |
ctccaaatgagtttatcatcaatgtcatgatgaatggtaatgctctgaatacagtcatggtaaa |
64 |
Q |
| |
|
|||||||||||||||||||||| |||| || |||||||||||| |||||||||| ||||||| |
|
|
| T |
840922 |
ctccaaatgagtttatcatcaacgtcactatcaatggtaatgctacgaatacagtcttggtaaa |
840859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University