View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13825_low_6 (Length: 501)

Name: NF13825_low_6
Description: NF13825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13825_low_6
NF13825_low_6
[»] chr2 (15 HSPs)
chr2 (20-421)||(2321549-2321972)
chr2 (22-241)||(2294236-2294464)
chr2 (400-492)||(2322015-2322107)
chr2 (22-215)||(2303849-2304046)
chr2 (22-120)||(2310567-2310665)
chr2 (31-119)||(2351434-2351522)
chr2 (20-120)||(2327402-2327502)
chr2 (261-381)||(2294512-2294633)
chr2 (261-331)||(2339306-2339375)
chr2 (34-101)||(2331131-2331198)
chr2 (403-492)||(2331566-2331653)
chr2 (261-298)||(2304241-2304278)
chr2 (261-333)||(2331412-2331484)
chr2 (139-244)||(2327562-2327664)
chr2 (461-492)||(2294657-2294688)
[»] chr8 (2 HSPs)
chr8 (32-105)||(41127444-41127517)
chr8 (32-105)||(26507056-26507129)


Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 421
Target Start/End: Original strand, 2321549 - 2321972
Alignment:
Q  20 cggagggcggccatgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcctagggtatag-------- 111  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  2321549 cggagggtggccatgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcctagggtatagattatgtg 2321648  T
Q  112 -gttatgtgtaacgatttggagtatgtaatgttgttgtgtgaaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtg 210  Q
     ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321649 tgttatgtgtaacgatttggagtatgtaatgttgt---gtgaaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtg 2321745  T
Q  211 gatttctcatatggtgggattttgtttcatacaat--------------acaatgatc--ccttacttcttatatatcttgtttcttgtataaaataaaa 294  Q
    ||||||||||||||| |||||||||||||||||||              ||| | ||   ||||||||||||||||||||||||||||||||||||||||    
T  2321746 gatttctcatatggtcggattttgtttcatacaatgatcccttatgcatacattcatatgccttacttcttatatatcttgtttcttgtataaaataaaa 2321845  T
Q  295 catgtctgtcattcttgtaagtcaagatactttcaatgtataaaaaatatgatcttgtttttgtaatatcaaagttgttttattttggtcgactgaagaa 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321846 catgtctgtcattcttgtaagtcaagatactttcaatgtataaaaaatatgatcttgtttttgtaatatcaaagttgttttattttggtcgactgaagaa 2321945  T
Q  395 aaagaagaaatgtatgtcctagctaaa 421  Q
    |||||||||||||||||||||||||||    
T  2321946 aaagaagaaatgtatgtcctagctaaa 2321972  T

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Target: chr2; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 2294236 - 2294464
Alignment:
Q  22 gagggcggccatgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcctagggtataggttatgtgt- 120  Q
    |||||||| |||||||||||| |||||| | | |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||     
T  2294236 gagggcgggcatgttgatttgacggaaatacaagaattcaccatggtgatgaaaaatccattgcaagttcatatttctcctaggatatagattatgtgtg 2294335  T
Q  121 --------aacgatttggagtatgtaatgttgttgtgtgaaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtgga 212  Q
            |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  2294336 ttatatgtaacgatgtggagtatgtaatgttgttgtgtgaaccaccctagattctctgcttgagaatgtcataacacagcaggggagtattatatgtgga 2294435  T
Q  213 tttctcatatggtgggattttgtttcata 241  Q
    ||| |||||||||||||||||||||||||    
T  2294436 tttgtcatatggtgggattttgtttcata 2294464  T

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Target: chr2; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 400 - 492
Target Start/End: Original strand, 2322015 - 2322107
Alignment:
Q  400 agaaatgtatgtcctagctaaaacagggaaattatgtttaggatcatagtgtctcatacaatatagattatgtttcctccctaaacatctgtg 492  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2322015 agaaatgtatgtcctagctaaaacagggaaattatgtttaggatcatagtgtctcatacaatatagattatgtttcctccctaaacatctgtg 2322107  T

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Target: chr2; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 2303849 - 2304046
Alignment:
Q  22 gagggcggccatgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcctagggtataggttatgtgta 121  Q
    ||||||||| |||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |     
T  2303849 gagggcggctatgttgatttgtcggaaaaacaagaattcaatatggtgatgaaaaatccattgcaagttcatatttctcctaggatatagattatgt-tt 2303947  T
Q  122 acgatttggagt-----atgtaatgttgttgtgtgaaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtggattt 215  Q
       || || | |     ||   |||||  ||||||||||||||||||||||||||||||||||||||||||||| ||  | ||||||||||||||||||    
T  2303948 tttatgtgtaatgataaatcgtatgttcctgtgtgaaccactctagattctctgcttgagaatgtcataacacagcaaagaaatattatatgtggattt 2304046  T

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Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 2310567 - 2310665
Alignment:
Q  22 gagggcggccatgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcctagggtataggttatgtgt 120  Q
    |||||||| |||||||||||| |||||| | | ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  2310567 gagggcgggcatgttgatttgacggaaatacaagaattcactatggtgatgaaaaatccagtgcaagttcatatttctcctaggatatagattatgtgt 2310665  T

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Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 2351434 - 2351522
Alignment:
Q  31 catgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcctagggtataggttatgtg 119  Q
    ||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||    
T  2351434 catgttgatttgtcggaaaaacaagaattcactgtggtgatgaaaaatccattgcaagttcgtatttctcctaggatatagtttatgtg 2351522  T

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Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 2327402 - 2327502
Alignment:
Q  20 cggagggcggccatgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcctagggtataggttatgtg 119  Q
    ||||||| |||||||| |||||||| ||||||  |||||||||  |||||||||||||||||||||||||||||||||||| |||  ||||| |||||||    
T  2327402 cggagggtggccatgtcgatttgtcagaaaaatttgaattcaccgtggtgatgaaaaatccattgcaagttcatatttctcatagaatatagattatgtg 2327501  T
Q  120 t 120  Q
    |    
T  2327502 t 2327502  T

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Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 261 - 381
Target Start/End: Original strand, 2294512 - 2294633
Alignment:
Q  261 ttcttatatatcttgtttcttgtataaaataaaacat-gtctgtcattcttgtaagtcaagatactttcaatgtataaaaaatatgatc-ttgtttttgt 358  Q
    ||||||||||||||||||| ||||||||  ||||| | | |||||||||||||||||||||||||||||| |||| |||| |||||||| ||||| | ||    
T  2294512 ttcttatatatcttgtttcctgtataaataaaaactttgcctgtcattcttgtaagtcaagatactttcattgta-aaaatatatgatctttgttgtagt 2294610  T
Q  359 aatatcaaagttgttttattttg 381  Q
    |||||  |||||| |||||||||    
T  2294611 aatattgaagttggtttattttg 2294633  T

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Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 261 - 331
Target Start/End: Original strand, 2339306 - 2339375
Alignment:
Q  261 ttcttatatatcttgtttcttgtataaaataaaacatgtctgtcattcttgtaagtcaagatactttcaat 331  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||||| ||||| |||||||||||||||    
T  2339306 ttcttatatatctcgtttcttgtataaaataaaacatgtttggcattctggtaag-caagatactttcaat 2339375  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 2331131 - 2331198
Alignment:
Q  34 gttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcc 101  Q
    ||||||||||| || ||| | |||||||||||||| ||||||||||||||||| | ||||||||||||    
T  2331131 gttgatttgtcagagaaacaggaattcactatggtcatgaaaaatccattgcaggctcatatttctcc 2331198  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 403 - 492
Target Start/End: Original strand, 2331566 - 2331653
Alignment:
Q  403 aatgtatgtcctagctaaaacagggaaattatgtttaggatcatagtgtctcatacaatatagattatgtttcctccctaaacatctgtg 492  Q
    |||||||||||||||| | ||  |||||||||||||||| | ||| | |||||||||||||||||| ||  |||||||||||||| ||||    
T  2331566 aatgtatgtcctagctgagac--ggaaattatgtttaggtttataatatctcatacaatatagattgtgcatcctccctaaacatttgtg 2331653  T

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Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 2304241 - 2304278
Alignment:
Q  261 ttcttatatatcttgtttcttgtataaaataaaacatg 298  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2304241 ttcttatatatcttgtttcttgtataaaataaaacatg 2304278  T

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Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 333
Target Start/End: Original strand, 2331412 - 2331484
Alignment:
Q  261 ttcttatatatcttgtttcttgtataaaataaaacatgtctgtcattcttgtaagtcaagatactttcaatgt 333  Q
    |||||| |||||||||||||| ||||||||||||||||  || | |||||| ||| |||||||| ||||||||    
T  2331412 ttcttacatatcttgtttcttatataaaataaaacatgcatgaccttcttgcaagccaagatacattcaatgt 2331484  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 2327562 - 2327664
Alignment:
Q  139 atgttgttgtgtgaaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtggatttctcata-tggtgggattttgttt 237  Q
    ||||||||||||||||||  ||||||||||| ||||  |||||||||||   |||| |||||||||||||| ||||| ||| | ||||  ||||||| ||    
T  2327562 atgttgttgtgtgaaccatcctagattctct-cttggcaatgtcataac---acagcggaatattatatgtagatttgtcacattggtaagattttgctt 2327657  T
Q  238 catacaa 244  Q
    |||||||    
T  2327658 catacaa 2327664  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 492
Target Start/End: Original strand, 2294657 - 2294688
Alignment:
Q  461 tatagattatgtttcctccctaaacatctgtg 492  Q
    ||||||||||||||||||||||||||||||||    
T  2294657 tatagattatgtttcctccctaaacatctgtg 2294688  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 41127444 - 41127517
Alignment:
Q  32 atgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcctagg 105  Q
    ||||||||||||||||||||  |||||||||  |||| |||||||||||| |||||||||||||||||||||||    
T  41127444 atgttgatttgtcggaaaaaactgaattcaccgtggttatgaaaaatccactgcaagttcatatttctcctagg 41127517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 26507056 - 26507129
Alignment:
Q  32 atgttgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcctagg 105  Q
    ||||||||||||| |||||| | ||||| ||||||||||||||| |||||||| ||| ||| || |||||||||    
T  26507056 atgttgatttgtcagaaaaacaggaatttactatggtgatgaaatatccattggaagctcaaatatctcctagg 26507129  T

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