View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13825_low_7 (Length: 448)
Name: NF13825_low_7
Description: NF13825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13825_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 19 - 430
Target Start/End: Complemental strand, 21123478 - 21123067
Alignment:
| Q |
19 |
acaatgctgagtggtttgtcaacatttaccaagattttacaattatttgatctatttgcgatccataaggctgtgtcgcgaaccatgtcatgcatcttca |
118 |
Q |
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| T |
21123478 |
acaatgctgagtggtttgtcaacatttaccaagattttacaattatttgatctatttgcgatccataaggctgtgtcgcgaaccatgtcatgcatcttca |
21123379 |
T |
|
| Q |
119 |
cgctaccatgcatcagcaaacaagaatccagaagtttgtttatgcgtgcttggaacatgctcctccttaactgcaatgagtatgttcttcctacacctac |
218 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21123378 |
cgctaccatgcatcagcaaacgagaatccagaagtttgtttatgtgtgcttggaacatgctcctccttaactgcaatgagtatgttcttcctacacctac |
21123279 |
T |
|
| Q |
219 |
tccaatttcatacctcaacaaatcttctactgggatgtgatagtcttcaagaaacatacagcacatcagaaatatcagttctgctgctctattttgtaaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
21123278 |
tccaatttcatacctcaacaaatcttctactgggatgtgatagtcttcaagaaacatacagcacatcagaaatatctgttctgcttctctattttgtaaa |
21123179 |
T |
|
| Q |
319 |
cactcatagctggacttgatacaatttaaagcatcgctctctcctccttcatgatcatcagatgcctttgaaaccatcaacttagataatgttgaattcc |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21123178 |
cactcatagctggacttgatacaatttaaagcatcgctctctcctccttcatgatcatcagatgcctttgaaaccatcaacttagctaatgttgaattcc |
21123079 |
T |
|
| Q |
419 |
actcagtattat |
430 |
Q |
| |
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||||| |||||| |
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| T |
21123078 |
actcattattat |
21123067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 266
Target Start/End: Complemental strand, 21116047 - 21115804
Alignment:
| Q |
23 |
tgctgagtggtttgtcaacatttaccaagattttacaattatttgatctatttgcgatccataaggctgtgtcgcgaaccatgtcatgcatcttcacgct |
122 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||||| |||| || ||||||||| ||||||||||||| |
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| T |
21116047 |
tgctaagtggtttgtcaacatttaccaagattttgcaattatctgatgtatttgcaatccataagactgtctcacgaaccatgccatgcatcttcacaga |
21115948 |
T |
|
| Q |
123 |
accatgcatcagcaaacaagaatccagaagtttgtttatgcgtgcttggaacatgctcctccttaactgcaatgagtatgttcttcctacacctactcca |
222 |
Q |
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|||| || | | |||||||||||| | |||||||||||| |||||| | || ||||||| || |||| ||||| || || ||| | ||||| |||| |
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| T |
21115947 |
accaggcgtgaacaaacaagaatcgaagagtttgtttatgtctgcttgaatcaagctcctcattgactgtaatgataatttttctcccatacctagtcca |
21115848 |
T |
|
| Q |
223 |
atttcatacctcaacaaatcttctactgggatgtgatagtcttc |
266 |
Q |
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| | || |||||| |||||||||| |||||||||||||||||| |
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| T |
21115847 |
aatgcaaacctcatcaaatcttctgttgggatgtgatagtcttc |
21115804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 21704609 - 21704516
Alignment:
| Q |
26 |
tgagtggtttgtcaacatttaccaagattttacaattatttgatctatttgcgatccataaggctgtgtcgcgaaccatgtcatgcatcttcac |
119 |
Q |
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|||| |||||||||||||||||||| ||||| | || | ||| || ||||| ||||||||||| |||||||||| ||||||||||||||| |
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| T |
21704609 |
tgagaggtttgtcaacatttaccaaaattttgcgatcctctgacctctttgctatccataaggccacttcgcgaaccaagtcatgcatcttcac |
21704516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 23009813 - 23009903
Alignment:
| Q |
30 |
tggtttgtcaacatttaccaagattttacaattatttgatctatttgcgatccataaggctgtgtcgcgaaccatgtcatgcatcttcacg |
120 |
Q |
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|||||||||||||||||||| ||||| ||| | |||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
23009813 |
tggtttgtcaacatttaccacaattttgttattgtctgatctctttgcaatccataaggctgtgtcacgaactgtgtcatgcatcttcacg |
23009903 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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