View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13825_low_8 (Length: 402)
Name: NF13825_low_8
Description: NF13825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13825_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 11 - 384
Target Start/End: Original strand, 4020069 - 4020442
Alignment:
| Q |
11 |
cacagaaccatgcatcatactttatttgaggaatattaacggatattgactttttccactatggcctgcgattttagaaataaccaatttgatctgatat |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4020069 |
cacaaaaccatgcatcatactttatttgaggaatattaacggatattgactttttccactatggcctgcgattttagaaatagccaatttgatctgatat |
4020168 |
T |
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| Q |
111 |
ggaagaagcaaggtcattgaccttacagtttacagttcagacatacacattcacactcccacagagcattggatttgttaaaaaccattatttaaataca |
210 |
Q |
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| T |
4020169 |
ggaagaagcaaggtcattgaccttacagtttacagttcagacatacacattcacactcccacagagcattggatttgttaaaaaccattatttaaataca |
4020268 |
T |
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| Q |
211 |
aaaatataaaatagttaaaccattgcatggcaggggaaacgttgactttccaaacagtttacatgctgaaaatatctgtatgaaccatgttacatgcact |
310 |
Q |
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| T |
4020269 |
aaaatataaaatagttaaaccattgcatggcaggggaaactttgactttccaaacagtttacatgctgaaaatatctgtatgaaccatgttgcatgcact |
4020368 |
T |
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| Q |
311 |
ttcctttaaatttaaatatattaaaatattaataacttcnnnnnnnaataatggtgggtggatgagtttgattc |
384 |
Q |
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| T |
4020369 |
ttcctttaaatttaaatatattaaaatattaataacttctttttttaataatggtgggtgaataagtttgattc |
4020442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 212 - 340
Target Start/End: Complemental strand, 3961045 - 3960916
Alignment:
| Q |
212 |
aaatataaaatagttaaaccattgcatggc-aggggaaacgttgactttccaaacagtttacatgctgaaaatatctgtatgaaccatgttacatgcact |
310 |
Q |
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| T |
3961045 |
aaatataaaatagttaaaccattgcatggctaggggaaacgttgacttgccaaacagtatacatgttgaagttatccgtatgaaccaagtgacttgcact |
3960946 |
T |
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| Q |
311 |
ttcctttaaatttaaatatattaaaatatt |
340 |
Q |
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| T |
3960945 |
ttcctttaaatttaaatatattaaaatatt |
3960916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 3806351 - 3806431
Alignment:
| Q |
16 |
aaccatgcatcatactttatttgaggaatattaacggatattgactttttccactatggcctgcgattttagaaataaccaa |
97 |
Q |
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| T |
3806351 |
aaccatgcatcatactttattcgaggaatattaactgatattgaccttttccactatgg-ctgcaatgttagaaataaccaa |
3806431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 3812994 - 3813074
Alignment:
| Q |
16 |
aaccatgcatcatactttatttgaggaatattaacggatattgactttttccactatggcctgcgattttagaaataaccaa |
97 |
Q |
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| T |
3812994 |
aaccatgcatcatactttattcgaggaatattaactgatattgaccttttccactatgg-ctgcaatgttagaaataaccaa |
3813074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 212 - 348
Target Start/End: Original strand, 4005668 - 4005811
Alignment:
| Q |
212 |
aaatataaaatagttaaaccattgcatggcaggggaaacgttgactttccaaacagtttac-------atgctgaaaatatctgtatgaaccatgttaca |
304 |
Q |
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| T |
4005668 |
aaatataaaatagttaaacaattgcaaggcagggggaacgttgacttgtcaaacagtatactgtatacatgtttggattatctgtatgaatgacgtgaca |
4005767 |
T |
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| Q |
305 |
tgcactttcctttaaatttaaatatattaaaatattaataactt |
348 |
Q |
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| T |
4005768 |
tgcactttcctttaaatttaaatatgttaaaatattaataactt |
4005811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 4221379 - 4221423
Alignment:
| Q |
305 |
tgcactttcctttaaatttaaatatattaaaatattaataacttc |
349 |
Q |
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| T |
4221379 |
tgcactttcctttaaatttaaatatattaaaatattaataacttc |
4221423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 340
Target Start/End: Original strand, 3822909 - 3822944
Alignment:
| Q |
305 |
tgcactttcctttaaatttaaatatattaaaatatt |
340 |
Q |
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| T |
3822909 |
tgcactttcctctaaatttaaatatattaaaatatt |
3822944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 3793230 - 3793286
Alignment:
| Q |
39 |
aggaatattaacggatattgactttttccactatggcctgcgattttagaaataacca |
96 |
Q |
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| T |
3793230 |
aggaatattaactgatattgacgttttccattatgg-ctgcaatgttagaaataacca |
3793286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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