View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13826_high_1 (Length: 563)
Name: NF13826_high_1
Description: NF13826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13826_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 11 - 548
Target Start/End: Complemental strand, 51688995 - 51688458
Alignment:
| Q |
11 |
agaatatatatcaacctttttctgtagctacctcttctgcaggttgtttataaattttacatatacagttcagtgtccttactgtaatatattatgtggc |
110 |
Q |
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| T |
51688995 |
agaatatatatcaacctttttctgtagctacctcttctgcaggttgtttataaattttacatatacagttcagtgtccttactgtaatatattatgtggc |
51688896 |
T |
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| Q |
111 |
tcaggctcaggctcaggctcagctgcatcaaaattcagaatagcatgttctcacccctagccaacaaccaagataaatatatttatttacttgaccattt |
210 |
Q |
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| T |
51688895 |
tcaggctcag------------ctgcatcaaaattcagaatagcatgttctcacccctagccaacaaccaagataaatatatttatttacttgaccattt |
51688808 |
T |
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| Q |
211 |
tgttgaccgatgcaaattgctttgtttttgacaaagagaggacatagattcttcaatgccaaaataaatgaaggagcaatggagaatttcaggcactatt |
310 |
Q |
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| T |
51688807 |
tgttgaccgatgcaaattgctttgtttttgacaaagagaggacatagattcttcaatgccaaaataaatgaaggagcaatggagaatttcaggcactatt |
51688708 |
T |
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| Q |
311 |
attagagtttaattttgatacatcaaacaaattactacaatattttctattgtgacttaaaaaatatggaaaatgctaactagtatcctgggcactgatt |
410 |
Q |
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| T |
51688707 |
attagagtttaattttgatacatcaaacaaattactacaatattttctattgtgacttaaaaaatatggaaaatgctaactagtactctgggcactaatt |
51688608 |
T |
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| Q |
411 |
aaggacccgtgggaaagagagag------------aatgcaaatttagcgccagcatgcaaagtacttaaatgtttgctgtggttgtacttttgtacatg |
498 |
Q |
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| T |
51688607 |
aaggacccgtgggaaagagagagaggtgtaactaaaatgcaaatttagcgccagcatacaaagtacttaaatgtttgctgtggttgtacttttgtacatg |
51688508 |
T |
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| Q |
499 |
atgcatgttaccttgtccctaataataactgtaggtgatgtaactggtga |
548 |
Q |
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| T |
51688507 |
atgcatgttaccttgtccctaataataactgtaggtgatgtaactggtga |
51688458 |
T |
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