View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13826_high_10 (Length: 390)
Name: NF13826_high_10
Description: NF13826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13826_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 376
Target Start/End: Complemental strand, 43173626 - 43173263
Alignment:
| Q |
13 |
aatatgggttagccgatcttattattacagaatccatttgaatagttataacttgacccgactttagttttagatgtggtccatttttcattttagctat |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43173626 |
aatatgggttagccgatcttattattacagaatccatttgaatagttataacttgacccgactttagttttagatgtggtccatttttcattttagctat |
43173527 |
T |
|
| Q |
113 |
acatatattttcacaaataaattgtccaagactaattattgtaaacgttttttcacaataataatgatgaagaaaatacaaattcaaatggaatggattc |
212 |
Q |
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||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43173526 |
acatatattttcataaataaattgtccaaaactaattattgtaaacgttttttcacaataataatgatgaagaaaataccaattcaaatggaatggattc |
43173427 |
T |
|
| Q |
213 |
aaaacgatattactatctaatactgtttattgtatgtcgcccaagataaactttgaggttaaatttgttaggagacaaacggatatggtttctcatacct |
312 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43173426 |
aaaacgatattactgtctaatactgtttattgtatgtcgtccaagataaattttgaggttaaatttgttaggagacaaacggatatggtttctcatacct |
43173327 |
T |
|
| Q |
313 |
tatgaggacgaccatttcttccgttggttctcttagttttgagttaatttctctttgtatttga |
376 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43173326 |
tatgaggacgaccatttcttccgttggttctcttagttttgagttaatttctctttgtatttga |
43173263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 37520503 - 37520393
Alignment:
| Q |
28 |
atcttattattacagaatccatttgaatagttataacttgacccgactttagttttagatgtggtccatttttcattttagctatacatatattttcaca |
127 |
Q |
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|||||||| |||||||||||||||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| ||||||| ||||||||||| |
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| T |
37520503 |
atcttattgttacagaatccatttgaacagttagaacttgacccgattttagttttagatggggtccatttttcatttgagctataaatatattttcatt |
37520404 |
T |
|
| Q |
128 |
aataaattgtc |
138 |
Q |
| |
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||||||||||| |
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| T |
37520403 |
aataaattgtc |
37520393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 18146325 - 18146543
Alignment:
| Q |
13 |
aatatgggttagccgatcttattattacagaatccatttgaatagttataacttgacccgactttagttttagatgtggtccatttttcattttagctat |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18146325 |
aatatgggttagccgatcttattattacagaatccatttgaacagttataacttgacccgattttagttttagatgtggtccatttttcattttagctat |
18146424 |
T |
|
| Q |
113 |
acatatattttcacaaataaattgtccaagactaattattgtaaacgttttttcacaataataatgatgaagaaaatacaaattcaaatggaatggattc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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|
| T |
18146425 |
acatatattttcacaaataaattgtccaagactaattattgtaaacgttttttcacaataataatgatggagaaaataccaattcaaatggaatggattc |
18146524 |
T |
|
| Q |
213 |
aaaacgatattactatcta |
231 |
Q |
| |
|
|||||||||||||| |||| |
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|
| T |
18146525 |
aaaacgatattactgtcta |
18146543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 25631779 - 25631996
Alignment:
| Q |
13 |
aatatgggttagccgatcttattattacagaatccatttgaatagttataacttgacccgactttagttttagatgtggtccatttttcattttagctat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| |
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|
| T |
25631779 |
aatatgggttagccgatcttattattacagaatccatttgaaca-ttataacttgacccgattttagatttagatgtggtccattttttattttagctat |
25631877 |
T |
|
| Q |
113 |
acatatattttcacaaataaattgtccaagactaattattgtaaacgttttttcacaataataatgatgaagaaaatacaaattcaaatggaatggattc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||| |
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|
| T |
25631878 |
acatatattttcacaaataaattgtccaagactaattattgtaaacgttttttcacaataataatgatggagaaaataccatttcaaatggaatggattc |
25631977 |
T |
|
| Q |
213 |
aaaacgatattactatcta |
231 |
Q |
| |
|
|||||||||||||| |||| |
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|
| T |
25631978 |
aaaacgatattactgtcta |
25631996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 48191543 - 48191755
Alignment:
| Q |
16 |
atgggttagccgatcttatt-attacagaatccatttgaatagttataacttgacccgactttagttttagatgtggtccatttttcattttagctatac |
114 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48191543 |
atgggttagttgatcttatttattacagaatcc----gaacagttataacttgacccgattttagttttagatgtggtccatttttcattttagctatac |
48191638 |
T |
|
| Q |
115 |
atatattttcacaaataaattgtccaagactaattattgtaaacgttttttcacaataataatgatgaagaaaatacaaattcaaatggaatggattcaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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|
| T |
48191639 |
atatattttcacaaataaattgtccaagactaattattgtaaacgttttttcacaataataatgatggagaaaataccaattcaaatggaatggattcac |
48191738 |
T |
|
| Q |
215 |
aacgatattactatcta |
231 |
Q |
| |
|
|||||||||||| |||| |
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|
| T |
48191739 |
aacgatattactgtcta |
48191755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 27 - 215
Target Start/End: Original strand, 40395125 - 40395313
Alignment:
| Q |
27 |
gatcttattattacagaatccatttgaatagttataacttgacccgactttagttttagatgtggtccatttttcattttagctatacatatattttcac |
126 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| || || |||||||||||||| ||||||||||||||||||| |||| | ||||||||| |
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|
| T |
40395125 |
gatcttattattacagaattcatttgaattattataacttggcctgattttagttttagatgaagtccatttttcattttagcaatacgtgtattttcac |
40395224 |
T |
|
| Q |
127 |
aaataaattgtccaagactaattattgtaaacgttttttcacaataataatgatgaagaaaatacaaattcaaatggaatggattcaaa |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||| |||||||||||| |
|
|
| T |
40395225 |
aaataaattgcgtaagactaattattgtaaacattttttcacaataataatgatagagaaaatatcaattcaaatgaaatggattcaaa |
40395313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 12002563 - 12002661
Alignment:
| Q |
13 |
aatatgggttagccgatcttattattacagaatccatttgaatagttataacttgacccgactttagttttagatgtggtccatttttcattttagcta |
111 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
12002563 |
aatatgggttagccgaccttattattacagaatccatttgaacatttataacttgacccgattttagttttagatgtggtccatttttcattttagcta |
12002661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 51981868 - 51981800
Alignment:
| Q |
156 |
aacgttttttcacaataataatgatgaagaaaatacaaattcaaatggaatggattcaaaacgatatta |
224 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||| |||||||||||| |
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|
| T |
51981868 |
aacgttttttcacaataataatgatggagaaaataccaattcaaatagaatggatttaaaacgatatta |
51981800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 647147 - 647098
Alignment:
| Q |
261 |
aactttgaggttaaatttgttaggagacaaacggatatggtttctcatac |
310 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| | |||||| ||||||| |
|
|
| T |
647147 |
aacttcgaggtgaaatttgttaggagacaaacgaacatggttgctcatac |
647098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 117 - 231
Target Start/End: Complemental strand, 18412139 - 18412025
Alignment:
| Q |
117 |
atattttcacaaataaattgtccaagactaattattgtaaacgttttttcacaataataatgatgaagaaaatacaaattcaaatggaatggattcaaaa |
216 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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|
| T |
18412139 |
atattttcacaaataaattgtcaaagactaattattgtaaacgttttttcacaataataatgatggagaaaataccaattcaaatggaatggattcaaaa |
18412040 |
T |
|
| Q |
217 |
cgatattactatcta |
231 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
18412039 |
cgatattactgtcta |
18412025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 18111771 - 18111704
Alignment:
| Q |
43 |
aatccatttgaatagttataacttgacccgactttagttttagatgtggtccatttttcattttagct |
110 |
Q |
| |
|
||||||||| |||| ||| |||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18111771 |
aatccatttcaataattacaacttgactcgcttttagttttagatgtggtccatttttcattttagct |
18111704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 28673561 - 28673525
Alignment:
| Q |
13 |
aatatgggttagccgatcttattattacagaatccat |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28673561 |
aatatgggttagccgatcttattattacagaatccat |
28673525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 27888198 - 27888265
Alignment:
| Q |
34 |
ttattacagaatccatttgaatagttataacttgacccgactttagttttagatgtggtccatttttc |
101 |
Q |
| |
|
||||| || ||||||||||||||| || |||||||||| | ||||||||| ||||||||||||||||| |
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|
| T |
27888198 |
ttatttcataatccatttgaatagctagaacttgacccaattttagtttttgatgtggtccatttttc |
27888265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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