View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13826_high_4 (Length: 476)

Name: NF13826_high_4
Description: NF13826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13826_high_4
NF13826_high_4
[»] chr7 (46 HSPs)
chr7 (10-476)||(45841064-45841529)
chr7 (42-276)||(47848607-47848838)
chr7 (55-238)||(36101896-36102076)
chr7 (152-276)||(30200188-30200308)
chr7 (139-247)||(41948478-41948586)
chr7 (152-238)||(42187441-42187527)
chr7 (40-191)||(38135329-38135476)
chr7 (135-238)||(35906409-35906512)
chr7 (171-238)||(42177259-42177326)
chr7 (152-266)||(39811900-39812014)
chr7 (36-238)||(28628045-28628244)
chr7 (135-238)||(12841483-12841586)
chr7 (135-238)||(13859216-13859319)
chr7 (135-238)||(31005194-31005297)
chr7 (135-238)||(34869391-34869494)
chr7 (152-238)||(36514432-36514516)
chr7 (152-238)||(43282376-43282465)
chr7 (135-238)||(49029247-49029350)
chr7 (140-214)||(38920789-38920863)
chr7 (158-276)||(48736130-48736248)
chr7 (158-238)||(27893779-27893857)
chr7 (118-202)||(12966029-12966113)
chr7 (96-239)||(19262603-19262743)
chr7 (36-92)||(30814783-30814839)
chr7 (37-89)||(40830319-40830371)
chr7 (152-235)||(28020938-28021021)
chr7 (139-238)||(14593732-14593835)
chr7 (135-276)||(37617877-37618019)
chr7 (152-238)||(40008642-40008728)
chr7 (196-238)||(48202959-48203001)
chr7 (152-217)||(27021917-27021982)
chr7 (135-276)||(46356064-46356205)
chr7 (36-92)||(44401237-44401293)
chr7 (135-238)||(11593931-11594034)
chr7 (135-238)||(44855380-44855483)
chr7 (153-238)||(5335893-5335976)
chr7 (139-238)||(16013255-16013358)
chr7 (135-233)||(33350014-33350112)
chr7 (127-217)||(40169641-40169731)
chr7 (36-77)||(1011176-1011217)
chr7 (36-77)||(12966145-12966186)
chr7 (118-183)||(35713721-35713786)
chr7 (44-89)||(36245524-36245569)
chr7 (135-260)||(43491257-43491382)
chr7 (37-89)||(14593877-14593929)
chr7 (152-265)||(47796361-47796476)
[»] chr1 (39 HSPs)
chr1 (36-238)||(43423690-43423889)
chr1 (36-217)||(40416363-40416541)
chr1 (36-233)||(38868858-38869052)
chr1 (142-238)||(17815445-17815539)
chr1 (152-265)||(51812469-51812582)
chr1 (96-275)||(14225998-14226175)
chr1 (153-276)||(9599620-9599743)
chr1 (36-217)||(36339915-36340093)
chr1 (102-240)||(19908214-19908352)
chr1 (41-225)||(26016421-26016602)
chr1 (137-238)||(51440975-51441076)
chr1 (59-201)||(13827705-13827844)
chr1 (135-238)||(1210716-1210819)
chr1 (139-238)||(9509289-9509388)
chr1 (47-202)||(5338731-5338883)
chr1 (212-276)||(4379938-4380002)
chr1 (36-238)||(32404638-32404836)
chr1 (36-217)||(3818968-3819146)
chr1 (135-238)||(34792557-34792660)
chr1 (36-192)||(8796226-8796379)
chr1 (36-200)||(48431518-48431679)
chr1 (139-276)||(27848017-27848153)
chr1 (157-238)||(35828780-35828861)
chr1 (118-271)||(40419577-40419730)
chr1 (139-276)||(1661359-1661500)
chr1 (155-275)||(16943109-16943228)
chr1 (152-207)||(7921837-7921892)
chr1 (139-218)||(8343070-8343149)
chr1 (135-217)||(22090088-22090170)
chr1 (152-238)||(32231179-32231265)
chr1 (59-238)||(38877478-38877652)
chr1 (40-89)||(8342997-8343046)
chr1 (177-238)||(43375829-43375889)
chr1 (135-238)||(8671891-8671992)
chr1 (37-89)||(10272375-10272427)
chr1 (158-202)||(13827948-13827992)
chr1 (172-276)||(39422287-39422390)
chr1 (135-207)||(51602058-51602130)
chr1 (204-276)||(52442781-52442853)
[»] chr4 (48 HSPs)
chr4 (152-238)||(33709895-33709981)
chr4 (40-266)||(54470150-54470373)
chr4 (152-276)||(49987361-49987485)
chr4 (152-275)||(51252686-51252807)
chr4 (172-238)||(10775667-10775733)
chr4 (152-238)||(44047573-44047659)
chr4 (135-233)||(53707770-53707868)
chr4 (135-276)||(56375223-56375364)
chr4 (139-238)||(25257793-25257890)
chr4 (36-169)||(13805377-13805507)
chr4 (135-238)||(31960022-31960125)
chr4 (135-238)||(48174301-48174404)
chr4 (135-238)||(52569723-52569826)
chr4 (152-238)||(37797823-37797909)
chr4 (35-89)||(45569120-45569174)
chr4 (172-276)||(17900413-17900517)
chr4 (152-276)||(38570972-38571095)
chr4 (36-88)||(49987526-49987578)
chr4 (102-238)||(10209009-10209141)
chr4 (187-266)||(20998955-20999034)
chr4 (160-276)||(31403250-31403369)
chr4 (36-129)||(47147453-47147543)
chr4 (135-233)||(33227185-33227283)
chr4 (42-92)||(34233142-34233192)
chr4 (173-276)||(43070014-43070113)
chr4 (159-276)||(50662322-50662437)
chr4 (174-276)||(45423552-45423650)
chr4 (159-276)||(50680672-50680789)
chr4 (139-238)||(50471499-50471596)
chr4 (36-92)||(53540404-53540460)
chr4 (152-238)||(28236156-28236240)
chr4 (102-238)||(28497459-28497596)
chr4 (152-215)||(31459024-31459087)
chr4 (135-238)||(33191056-33191159)
chr4 (172-276)||(44360016-44360124)
chr4 (118-238)||(46715563-46715678)
chr4 (35-89)||(7682021-7682075)
chr4 (135-217)||(43433916-43433998)
chr4 (135-233)||(47265410-47265508)
chr4 (36-69)||(33225945-33225978)
chr4 (41-86)||(38865758-38865803)
chr4 (220-276)||(2588914-2588970)
chr4 (187-276)||(34233291-34233382)
chr4 (153-217)||(35555873-35555937)
chr4 (36-92)||(37488205-37488261)
chr4 (135-207)||(37773659-37773731)
chr4 (125-217)||(41192828-41192920)
chr4 (135-238)||(48622751-48622852)
[»] chr5 (30 HSPs)
chr5 (35-238)||(7359371-7359570)
chr5 (37-247)||(14749269-14749476)
chr5 (37-234)||(31636033-31636225)
chr5 (36-237)||(15489604-15489802)
chr5 (102-202)||(43475247-43475347)
chr5 (135-238)||(2075682-2075785)
chr5 (37-217)||(2712936-2713113)
chr5 (159-276)||(32516491-32516606)
chr5 (139-238)||(33667189-33667286)
chr5 (135-238)||(4496355-4496458)
chr5 (36-193)||(42199302-42199456)
chr5 (135-233)||(24178486-24178584)
chr5 (36-271)||(6888931-6889163)
chr5 (36-92)||(9235163-9235217)
chr5 (153-234)||(18351134-18351215)
chr5 (153-231)||(43558053-43558133)
chr5 (153-266)||(30588396-30588505)
chr5 (153-276)||(34194724-34194845)
chr5 (135-238)||(1275236-1275338)
chr5 (152-238)||(11002648-11002732)
chr5 (35-89)||(3775178-3775232)
chr5 (34-92)||(5305753-5305811)
chr5 (139-217)||(34273019-34273097)
chr5 (119-272)||(4026527-4026679)
chr5 (36-89)||(9917562-9917615)
chr5 (36-89)||(12576972-12577025)
chr5 (51-276)||(21952284-21952512)
chr5 (36-92)||(6788181-6788237)
chr5 (135-238)||(12492592-12492698)
chr5 (205-276)||(33006595-33006664)
[»] chr3 (26 HSPs)
chr3 (36-267)||(39600793-39601021)
chr3 (102-276)||(19736929-19737104)
chr3 (102-276)||(19757832-19758007)
chr3 (118-276)||(36820152-36820308)
chr3 (139-262)||(49503766-49503889)
chr3 (135-238)||(47233804-47233907)
chr3 (36-202)||(42510128-42510289)
chr3 (152-233)||(54128354-54128435)
chr3 (152-247)||(29600861-29600957)
chr3 (36-193)||(21200564-21200718)
chr3 (35-90)||(33755453-33755508)
chr3 (139-238)||(52138771-52138870)
chr3 (156-238)||(3987018-3987100)
chr3 (152-238)||(26388452-26388538)
chr3 (172-238)||(50249355-50249421)
chr3 (36-89)||(31261054-31261107)
chr3 (36-89)||(40982013-40982066)
chr3 (139-216)||(50960845-50960922)
chr3 (152-215)||(26490309-26490372)
chr3 (135-238)||(28245408-28245511)
chr3 (41-92)||(40116585-40116636)
chr3 (172-238)||(31454471-31454536)
chr3 (36-217)||(45289203-45289383)
chr3 (35-83)||(46367499-46367547)
chr3 (36-92)||(54365087-54365143)
chr3 (156-269)||(55244242-55244351)
[»] chr2 (27 HSPs)
chr2 (36-276)||(9556481-9556717)
chr2 (36-238)||(38434922-38435122)
chr2 (36-238)||(37481729-37481928)
chr2 (153-235)||(11412695-11412777)
chr2 (36-238)||(43752059-43752258)
chr2 (43-213)||(18958903-18959074)
chr2 (152-238)||(13240970-13241056)
chr2 (36-112)||(33504320-33504393)
chr2 (186-276)||(36039156-36039246)
chr2 (125-217)||(11017306-11017398)
chr2 (36-133)||(26784452-26784546)
chr2 (139-238)||(41763254-41763352)
chr2 (152-238)||(19024151-19024237)
chr2 (139-276)||(8180713-8180850)
chr2 (36-89)||(19235096-19235149)
chr2 (166-237)||(7615271-7615340)
chr2 (135-203)||(24583840-24583908)
chr2 (152-238)||(40759070-40759157)
chr2 (152-201)||(14197387-14197437)
chr2 (195-276)||(21834486-21834567)
chr2 (172-276)||(23714506-23714607)
chr2 (172-276)||(24102178-24102279)
chr2 (36-77)||(33287550-33287591)
chr2 (154-214)||(12141539-12141599)
chr2 (36-92)||(37452338-37452394)
chr2 (37-207)||(44437834-44438001)
chr2 (48-92)||(45436956-45437000)
[»] chr8 (40 HSPs)
chr8 (37-276)||(32043523-32043759)
chr8 (40-238)||(5908613-5908812)
chr8 (176-266)||(44681288-44681378)
chr8 (36-261)||(10080019-10080239)
chr8 (152-238)||(9695602-9695688)
chr8 (153-238)||(13171875-13171960)
chr8 (172-238)||(11733718-11733784)
chr8 (157-234)||(42493536-42493611)
chr8 (36-85)||(4011204-4011253)
chr8 (152-213)||(41444551-41444612)
chr8 (158-266)||(2518623-2518730)
chr8 (205-276)||(16252868-16252937)
chr8 (153-233)||(30113423-30113503)
chr8 (135-276)||(36545080-36545223)
chr8 (135-238)||(36565449-36565552)
chr8 (36-164)||(35914713-35914838)
chr8 (156-238)||(39051113-39051195)
chr8 (35-92)||(16705861-16705918)
chr8 (195-276)||(28300380-28300461)
chr8 (178-238)||(35601992-35602050)
chr8 (36-89)||(45512607-45512660)
chr8 (36-96)||(5127382-5127442)
chr8 (36-92)||(35643718-35643774)
chr8 (173-276)||(36069576-36069676)
chr8 (139-238)||(36395161-36395261)
chr8 (37-92)||(2216402-2216457)
chr8 (172-238)||(25985492-25985556)
chr8 (152-238)||(2796528-2796614)
chr8 (152-238)||(7046305-7046391)
chr8 (152-202)||(18474185-18474235)
chr8 (37-86)||(24399902-24399951)
chr8 (153-218)||(29700267-29700332)
chr8 (139-271)||(30748397-30748527)
chr8 (36-89)||(32931078-32931131)
chr8 (152-217)||(40813316-40813381)
chr8 (135-207)||(12491346-12491418)
chr8 (135-238)||(18125146-18125247)
chr8 (40-142)||(38178376-38178475)
chr8 (36-88)||(38392005-38392057)
chr8 (35-88)||(41444451-41444506)
[»] scaffold0018 (3 HSPs)
scaffold0018 (135-238)||(31439-31542)
scaffold0018 (139-218)||(44080-44159)
scaffold0018 (36-89)||(178532-178585)
[»] chr6 (11 HSPs)
chr6 (139-271)||(33083996-33084128)
chr6 (36-91)||(34617-34672)
chr6 (171-238)||(12134145-12134212)
chr6 (79-217)||(14389323-14389457)
chr6 (36-77)||(9593820-9593861)
chr6 (153-218)||(21870299-21870364)
chr6 (105-201)||(6293564-6293660)
chr6 (150-202)||(7513614-7513666)
chr6 (36-92)||(8364670-8364726)
chr6 (36-201)||(24665818-24665981)
chr6 (35-87)||(33997655-33997707)
[»] scaffold0050 (1 HSPs)
scaffold0050 (36-92)||(45556-45611)


Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 46)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 10 - 476
Target Start/End: Original strand, 45841064 - 45841529
Alignment:
Q  10 ctatatcatatttctatctaaagcattttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatct 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  45841064 ctatatcatatttctatctaaagcattttcttaatagtttctctcgtaatttttctaggtgttcctctgtctctagtgatctggcgactacgctccatct 45841163  T
Q  110 gatttatgctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctc 209  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  45841164 gatttatgctccttgctacaaaatgtacaggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttac-tc 45841262  T
Q  210 aactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaacgtctaaagaagaaaatattgaaaactacataaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45841263 aactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaacatctaaagaagaaaatattgaaaactacataaa 45841362  T
Q  310 cataaatccaaatttaccatttcattgaggagcaaggactgatcttgtttccacaaataagccaaagaaacaagacctaacctagaacaaacactttcga 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45841363 cataaatccaaatttaccatttcattgaggagcaaggactgatcttgtttccacaaataagccaaagaaacaagacctaacctagaacaaacactttcga 45841462  T
Q  410 cgcgcagtctctgataatcagatgcaatggcaccggaacacacagcagtaacagaggggatctgcct 476  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45841463 cgcgcagtctctgataatcagatgcaatggcaccggaacacacagcagtaacagaggggatctgcct 45841529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 42 - 276
Target Start/End: Complemental strand, 47848838 - 47848607
Alignment:
Q  42 aatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgggt 141  Q
    |||||||||||| ||| ||||||||| | |||||||| ||||||||||| |   ||||  ||||||||||| ||  ||||||  |||| ||| |||  ||    
T  47848838 aatagtttctcttatagtttttctagttcttcctctgcctctagtgatcag---actatcctccatctgatctactctccttagtacagaatttacaagt 47848742  T
Q  142 catctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccg 241  Q
    | |||| |  ||||||||||||| |||| |||| |||||||| ||||||||| |||||| | |||| ||||||||| ||||||||| ||| |||| | |     
T  47848741 cttctctcgacatgcccaaaccacctaagcctattttccaccatcttttctactataggcgctaccccaactctctctctaatgttatcacttctgatcc 47848642  T
Q  242 tatctcttctaagcttaccacacattcaacacaac 276  Q
    |||| | ||||  |||||||||||| |||||||||    
T  47848641 tatcccgtctagtcttaccacacatccaacacaac 47848607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 55 - 238
Target Start/End: Original strand, 36101896 - 36102076
Alignment:
Q  55 ataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcat 154  Q
    ||||||||||||||| |||||||| |||||||||||||   ||||  |||||| |||| ||  |||| || |||||||| ||  |||| |||| || |||    
T  36101896 ataatttttctaggtcttcctctgcctctagtgatctg---actattctccatatgatctactctccctgttacaaaatctataggtcttctctctacat 36101992  T
Q  155 gcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
     ||||||||| |||| |||| |||||| | |||||||||||||||||| |||||  |||||   || |||||||||||||||||    
T  36101993 ccccaaaccacctaagcctattttccaacatcttttctattataggtgctaccttcactcttcctcaaatgttgtcatttctaa 36102076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 276
Target Start/End: Original strand, 30200188 - 30200308
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttct 251  Q
    |||||| ||| || |||| ||||||||||||| ||||||||| |||||||||||||  |||||    |||||||||||||||||||| | |||| | |||    
T  30200188 catgccaaaatcacctaagcctagtttccaccatcttttctactataggtgttaccctaactc----tctaatgttgtcatttctaatcatatcccatct 30200283  T
Q  252 aagcttaccacacattcaacacaac 276  Q
    || |||||||||||| |||||||||    
T  30200284 aatcttaccacacatccaacacaac 30200308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 139 - 247
Target Start/End: Complemental strand, 41948586 - 41948478
Alignment:
Q  139 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||| |||| || |||||||||||||  ||| ||||||||||||| ||||||||||| || ||| |||  ||||||||  ||||||||||||||||||||    
T  41948586 ggtcttctctctacatgcccaaaccacttaagcctagtttccaccatcttttctattgtaagtgctacgccaactctcactctaatgttgtcatttctaa 41948487  T
Q  239 ccgtatctc 247  Q
     ||||||||    
T  41948486 tcgtatctc 41948478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 42187527 - 42187441
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    ||||||||||||| |||| |||| |||||||| |||||||||||||||||| |||| | ||||||| ||||||| || |||||||||    
T  42187527 catgcccaaaccacctaagcctattttccaccatcttttctattataggtgctaccccgactctctttctaatgctgccatttctaa 42187441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 40 - 191
Target Start/End: Original strand, 38135329 - 38135476
Alignment:
Q  40 ttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgg 139  Q
    |||||||||||||| ||| ||||||||||| ||| |||| ||||| |||||||   ||||  ||||||||||| ||| |||||| ||||||||| ||| |    
T  38135329 ttaatagtttctcttatactttttctaggtcttcatctgcctctaatgatctg---actatcctccatctgatctat-ctccttactacaaaatctactg 38135424  T
Q  140 gtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttc 191  Q
    ||| |||  || |||| |||||||| |||| |||| |||||||| |||||||    
T  38135425 gtcttctgtctacatgtccaaaccacctaagcctattttccaccatcttttc 38135476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 35906409 - 35906512
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||||| ||||||| ||||||| |||||||     
T  35906409 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacctccactctctctctaatggtgtcattc 35906508  T
Q  235 ctaa 238  Q
    ||||    
T  35906509 ctaa 35906512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 42177259 - 42177326
Alignment:
Q  171 cctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||||||| |||| ||||||||| |||||||| |||||||||||||| |||||| |||||||||||||    
T  42177259 cctagttttcaccatcttttctactataggtgatacctcaactctctctctaatattgtcatttctaa 42177326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 266
Target Start/End: Complemental strand, 39812014 - 39811900
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttct 251  Q
    ||||||||||| | |||| || ||||| |||| | |||||||| ||||||| | || ||||||||| |||||||||||||||||||| | |||| | |||    
T  39812014 catgcccaaactacctaagccgagttttcaccattttttctatgataggtgctgccccaactctctctctaatgttgtcatttctaatcctatcacgtct 39811915  T
Q  252 aagcttaccacacat 266  Q
    |  ||||||||||||    
T  39811914 agtcttaccacacat 39811900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 36 - 238
Target Start/End: Original strand, 28628045 - 28628244
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    |||| ||||||||||||| ||| ||||||||||| |||||||  |||| ||||| ||   ||||  ||||||| ||| ||  |||||| ||||| ||| |    
T  28628045 tttcctaatagtttctcttatagtttttctaggtcttcctctacctcttgtgatttg---actatcctccatcggatctactctccttactacataatct 28628141  T
Q  136 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 235  Q
    || |||  ||||  | ||||||||||||| |||| || | |||||||| || |||||| | |||||| |||  |||||| || ||||||||||| |||||    
T  28628142 acaggttttctctttacatgcccaaaccacctaagccaattttccaccatcatttctactctaggtgctactccaactccctctctaatgttgtaatttc 28628241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 12841483 - 12841586
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||||| ||||||| |||||||  ||||||     
T  12841483 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacctccactctctctctaatggggtcattc 12841582  T
Q  235 ctaa 238  Q
    ||||    
T  12841583 ctaa 12841586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 13859216 - 13859319
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||     
T  13859216 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattc 13859315  T
Q  235 ctaa 238  Q
    ||||    
T  13859316 ctaa 13859319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 31005297 - 31005194
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| || ||||||||||||| ||||||||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| ||| |||     
T  31005297 tacgggtcttctctctacatgcccaaaccatctaaacctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgttattc 31005198  T
Q  235 ctaa 238  Q
    ||||    
T  31005197 ctaa 31005194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 34869494 - 34869391
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||     
T  34869494 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattc 34869395  T
Q  235 ctaa 238  Q
    ||||    
T  34869394 ctaa 34869391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 36514432 - 36514516
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    ||||||||||||| ||||  |||||||| ||| ||||||||| |||||||| |||| ||||||||  |||||||||||| |||||||    
T  36514432 catgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaactctc--tctaatgttgtcctttctaa 36514516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 43282465 - 43282376
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatct---aatgttgtcatttctaa 238  Q
    |||||||||  || |||| |||||||||||||| |||||||| |||||||| |||| ||||||||| |||   |||||||||||||||||    
T  43282465 catgcccaattcacctaagcctagtttccaccgacttttctactataggtgctaccccaactctctctctctaaatgttgtcatttctaa 43282376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 49029350 - 49029247
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||     
T  49029350 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattc 49029251  T
Q  235 ctaa 238  Q
    ||||    
T  49029250 ctaa 49029247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 38920863 - 38920789
Alignment:
Q  140 gtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactc 214  Q
    |||||||| || |||||||||||||  ||| ||||||||||||| ||||||||| |||||||| |||| ||||||    
T  38920863 gtcatctctctacatgcccaaaccacttaagcctagtttccaccatcttttctactataggtgctaccccaactc 38920789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 158 - 276
Target Start/End: Original strand, 48736130 - 48736248
Alignment:
Q  158 caaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagctt 257  Q
    ||||||| ||||  ||||||||  || ||||||||| | |||||| |||| ||||||||| | |||||| |||||||||||   |||||| ||||  |||    
T  48736130 caaaccacctaagtctagtttctcccatcttttctactgtaggtgctaccccaactctctctataatgtcgtcatttctaattttatctcatctagtctt 48736229  T
Q  258 accacacattcaacacaac 276  Q
    |||||||||||||| ||||    
T  48736230 accacacattcaacgcaac 48736248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 27893779 - 27893857
Alignment:
Q  158 caaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    ||||||| |||| |||| |||||||| ||| ||||| ||||||||||||||||||||||  |||||| ||||| |||||||    
T  27893779 caaaccacctaagcctattttccaccatctattctactataggtgttacctcaactctc--tctaatattgtcgtttctaa 27893857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 12966113 - 12966029
Alignment:
Q  118 ctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtg 202  Q
    |||||| ||||| ||| |||||||| |||| || ||||||||||||| |||| | ||||||||||| ||||||||  ||||||||    
T  12966113 ctccttactacagaatttacgggtcttctctctacatgcccaaaccacctaagcatagtttccaccatcttttcttctataggtg 12966029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 19262603 - 19262743
Alignment:
Q  96 actacgctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctatt 195  Q
    ||||| ||||||||||| ||  || ||| ||||||| | ||| |||| |||| || ||||| ||||||| |||| || |||||| ||| |||||||||      
T  19262603 actacactccatctgatctactcttcttactacaaa-tctacaggtcttctctctacatgctcaaaccacctaagccaagtttctaccatcttttctaca 19262701  T
Q  196 ataggtgttacctcaactctctatctaatgttgtcatttctaac 239  Q
    ||||||| |||| |||||||||  ||||| ||||||||||||||    
T  19262702 ataggtgctaccccaactctct--ctaatattgtcatttctaac 19262743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 30814783 - 30814839
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 92  Q
    |||||||||||||||||| ||| | ||||||||| |||||||| |||||||||||||    
T  30814783 tttcttaatagtttctcttatagtgtttctaggtcttcctctgcctctagtgatctg 30814839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 40830371 - 40830319
Alignment:
Q  37 ttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 89  Q
    ||||||||||||||||| |||  |||||||||| |||||||||||||||||||    
T  40830371 ttcttaatagtttctcttatagattttctaggtcttcctctgtctctagtgat 40830319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 28021021 - 28020938
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 235  Q
    ||||||||||||| |||| || |||||||||| |||||||||  ||| ||| |||| ||||||| | ||||||||| |||||||    
T  28021021 catgcccaaaccacctaagccaagtttccaccatcttttctacgataagtgctaccccaactctttctctaatgttatcatttc 28020938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 14593835 - 14593732
Alignment:
Q  139 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctca----actctctatctaatgttgtcattt 234  Q
    |||| ||||||| |||||||||| || ||||  |||||||| ||| | ||||||| ||||||||| ||| ||    ||||||| ||||||||||||||||    
T  14593835 ggtcttctcactacatgcccaaatcacctaagtctagtttctaccattttttctactataggtgtcaccccagctcactctctctctaatgttgtcattt 14593736  T
Q  235 ctaa 238  Q
    ||||    
T  14593735 ctaa 14593732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 276
Target Start/End: Complemental strand, 37618019 - 37617877
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaaccta-gtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatt 233  Q
    |||||||| |||| || ||||||||||||| |||| ||||  |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||    
T  37618019 tacgggtcttctctctacatgcccaaaccatctaagcctatttttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcatt 37617920  T
Q  234 tctaaccgtatctcttctaagcttaccacacattcaacacaac 276  Q
     |||| | |||||  ||||  |||||||| ||| |||| ||||    
T  37617919 cctaatcctatcttgtctagtcttaccactcatccaacgcaac 37617877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 40008642 - 40008728
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgtt--acctcaactctctatctaatgttgtcatttctaa 238  Q
    ||||||||||||| |||| || |||||||||| |||||||| | |||||||||   || ||||||||  ||||||||||||||||||||    
T  40008642 catgcccaaaccacctaatccgagtttccaccatcttttctttgataggtgtttatccccaactctc--tctaatgttgtcatttctaa 40008728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 48202959 - 48203001
Alignment:
Q  196 ataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||||||||||| ||||||||| ||||||||||||||||||||    
T  48202959 ataggtgttaccccaactctctctctaatgttgtcatttctaa 48203001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 27021917 - 27021982
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 217  Q
    ||||||||||||| |||| |||||||| ||||  |||||||| |||||||| |||| |||||||||    
T  27021917 catgcccaaaccacctaagcctagttttcaccaacttttctactataggtgctaccccaactctct 27021982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 135 - 276
Target Start/End: Original strand, 46356064 - 46356205
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||| ||| |||| || ||||||||||||| ||||||||| |||| |||  |||||||| |||||||| |||| | | ||||| ||| ||| |||||||     
T  46356064 tacgtgtcttctctctacatgcccaaaccatctaaacctattttctaccaacttttctactataggtgctacccccattctctctctgatggtgtcattc 46356163  T
Q  235 ctaaccgtatctcttctaagcttaccacacattcaacacaac 276  Q
    |||| | ||||   ||||  |||||||| |||||||| ||||    
T  46356164 ctaatcctatcctgtctagtcttaccactcattcaacgcaac 46356205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 44401237 - 44401293
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 92  Q
    |||||||||||||||||| |||||||||||||||  |||||   |||||||||||||    
T  44401237 tttcttaatagtttctcttataatttttctaggtcatcctccacctctagtgatctg 44401293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 11594034 - 11593931
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| || ||||||||||||| |||| | || |||| |||  |||||||| |||||||| |||| | ||||||| || |||| |||||||     
T  11594034 tacgggtcttctctctacatgcccaaaccatctaaccgtattttctaccaacttttctactataggtgctacccccactctctctcaaatggtgtcattc 11593935  T
Q  235 ctaa 238  Q
    ||||    
T  11593934 ctaa 11593931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 44855380 - 44855483
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||  || | | ||||||| ||||||| |||||||     
T  44855380 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtactatccccactctctctctaatggtgtcattc 44855479  T
Q  235 ctaa 238  Q
    ||||    
T  44855480 ctaa 44855483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 5335976 - 5335893
Alignment:
Q  153 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||||||||||| ||||  |||||||| ||| ||||| ||| ||||| || |||| ||||||||  ||||||||| ||||||||||    
T  5335976 atgcccaaaccacctaagtctagtttcgaccatctttcctactatagatgctaccccaactctc--tctaatgttatcatttctaa 5335893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 16013358 - 16013255
Alignment:
Q  139 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctca----actctctatctaatgttgtcattt 234  Q
    |||| ||||||| |||||||||| || ||||  |||||||| ||| | |||| || ||||||||| ||| ||    ||||||| ||||||||||||||||    
T  16013358 ggtcttctcactacatgcccaaatcacctaagtctagtttctaccattttttgtactataggtgtcaccccagctcactctctctctaatgttgtcattt 16013259  T
Q  235 ctaa 238  Q
    ||||    
T  16013258 ctaa 16013255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 33350014 - 33350112
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatt 233  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| | |  |||||||| ||||||||  ||| | ||||||| ||||||| |||||||    
T  33350014 tacgggtcttctctctacatgcccaaaccatctaagcctattttctagcaacttttctactataggtgcaacccccactctctctctaatggtgtcatt 33350112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 40169731 - 40169641
Alignment:
Q  127 acaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 217  Q
    ||||||| |||| ||| | || || ||||||||||||| |||| |||| |||||||| ||||||||| |||| ||| |||| ||| |||||    
T  40169731 acaaaatctacgtgtcttatctctacatgcccaaaccacctaagcctattttccaccatcttttctactataagtgctaccccaattctct 40169641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 1011217 - 1011176
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctct 77  Q
    |||| ||||| ||||||||||||||||||||||| |||||||    
T  1011217 tttcctaataatttctctcataatttttctaggtcttcctct 1011176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 12966186 - 12966145
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctct 77  Q
    |||||||||||||||||| ||| ||||||||||| |||||||    
T  12966186 tttcttaatagtttctcttatagtttttctaggtcttcctct 12966145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 35713786 - 35713721
Alignment:
Q  118 ctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccacc 183  Q
    |||||| |||||||||||||  ||| |||| || ||||||||||||| |||| |||| ||||||||    
T  35713786 ctccttactacaaaatgtacaagtcttctctctacatgcccaaaccacctaagcctattttccacc 35713721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 36245524 - 36245569
Alignment:
Q  44 tagtttctctcataatttttctaggtgttcctctgtctctagtgat 89  Q
    |||||||||| ||| ||||| ||||| |||||||||||||||||||    
T  36245524 tagtttctcttatagtttttataggtcttcctctgtctctagtgat 36245569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 260
Target Start/End: Complemental strand, 43491382 - 43491257
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||   |||| || ||||||||||||| | |||||||  | |||| |||||||     
T  43491382 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaatttttatactataggtgttacccctactctctccccaatggtgtcattc 43491283  T
Q  235 ctaaccgtatctcttctaagcttacc 260  Q
    |||| | |||| | ||||| ||||||    
T  43491282 ctaatcatatcccatctaatcttacc 43491257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 14593929 - 14593877
Alignment:
Q  37 ttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 89  Q
    ||||||||||||||||| ||| ||||||||||| |||| ||  ||||||||||    
T  14593929 ttcttaatagtttctcttatagtttttctaggtcttcccctacctctagtgat 14593877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 265
Target Start/End: Original strand, 47796361 - 47796476
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactct--ctatctaatgttgtcatttctaaccgtatctctt 249  Q
    ||||||||||||| |||  |||| |||| |||  |||||||| ||||| || |||  |||||||  ||||||||| ||||||||||||| | |||| | |    
T  47796361 catgcccaaaccacctacgcctattttcaaccaccttttctactatagttggtactccaactctctctatctaatattgtcatttctaatcctatcccat 47796460  T
Q  250 ctaagcttaccacaca 265  Q
    |||  |||||||||||    
T  47796461 ctagtcttaccacaca 47796476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 36 - 238
Target Start/End: Complemental strand, 43423889 - 43423690
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    ||||||||| || |||||  |||||||||||||| |||||||  |||||||||| || | ||||   |||||||  | ||  || ||| ||||| ||| |    
T  43423889 tttcttaatggtctctcttgtaatttttctaggtcttcctctacctctagtgatttgactacta---tccatctagtctactctacttactacataatct 43423793  T
Q  136 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 235  Q
    ||  ||| |||| || |||| |||||||| |||| ||||||||||||| ||||||||| ||||||||||||| ||||||||| |||||||| ||||||||    
T  43423792 acaagtcttctctctacatggccaaaccacctaagcctagtttccaccatcttttctactataggtgttaccccaactctctctctaatgtggtcatttc 43423693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 217
Target Start/End: Complemental strand, 40416541 - 40416363
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    |||||||||||||| ||| ||| ||||||||||| ||| ||||||| | ||||||||   ||||  || |||||||| ||  |||||| ||||||||| |    
T  40416541 tttcttaatagtttgtcttatagtttttctaggtcttcttctgtctttggtgatctg---actatcctgcatctgatctactctccttactacaaaatct 40416445  T
Q  136 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 217  Q
    || | || |||| || |||||| |||||| |||| ||| ||||||||| ||||||||| |||||||| |||  |||||||||    
T  40416444 acagttcttctctctacatgcctaaaccacctaagcctcgtttccaccatcttttctactataggtgctactccaactctct 40416363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 233
Target Start/End: Complemental strand, 38869052 - 38868858
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    |||||||||| ||||||| ||| ||||||||||| ||| |||| ||||| |||| ||   ||||| |||||||| || ||  ||||| |||| | ||| |    
T  38869052 tttcttaataatttctcttatagtttttctaggtcttcttctgcctctaatgatttg---actaccctccatctaatctactctcctcgctagagaatct 38868956  T
Q  136 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatt 233  Q
    ||  ||  |||| || ||||||||||||| |||| || |||||||||| |||||||||| ||||||| |||  |||| |||| | |||||||||||||    
T  38868955 actagtgttctctctacatgcccaaaccacctaagccgagtttccaccatcttttctatgataggtgctactccaaccctctctttaatgttgtcatt 38868858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 142 - 238
Target Start/End: Complemental strand, 17815539 - 17815445
Alignment:
Q  142 catctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||||| || |||||||||||||||||| ||||||||||||| ||||||| |||||| ||  |||||||  ||||| |||||| |||||||||||||    
T  17815539 catctctctacatgcccaaaccaactaagcctagtttccaccatcttttccattataagtcctacctca--tctctctctaatattgtcatttctaa 17815445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 152 - 265
Target Start/End: Complemental strand, 51812582 - 51812469
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttct 251  Q
    |||||||||| ||  ||| ||||||||||||| ||||||||| ||||| ||||||| ||||||||| ||||| || ||||||||||| | ||||   |||    
T  51812582 catgcccaaatcacataagcctagtttccaccatcttttctactatagttgttaccccaactctctctctaaagtagtcatttctaatcttatcgtgtct 51812483  T
Q  252 aagcttaccacaca 265  Q
    || |||||||||||    
T  51812482 aatcttaccacaca 51812469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 275
Target Start/End: Original strand, 14225998 - 14226175
Alignment:
Q  96 actacgctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctatt 195  Q
    |||||||||||| |||| ||  |||||| ||||||||| ||| ||    ||| || ||||||||||||| |||| |||| |||||||| ||||||||||     
T  14225998 actacgctccatgtgatctactctccttactacaaaatctacaggaatcctctctacatgcccaaaccacctaagcctattttccaccatcttttctatg 14226097  T
Q  196 ataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaa 275  Q
    ||||||| |||  ||||||||  || ||||||| ||||||||| | ||||   ||||  |||||||||||| ||||||||    
T  14226098 ataggtgctactgcaactctc--tccaatgttgccatttctaatcctatcatgtctagccttaccacacatccaacacaa 14226175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 153 - 276
Target Start/End: Original strand, 9599620 - 9599743
Alignment:
Q  153 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttcta 252  Q
    |||||| ||||| |||| |||| |||| ||| ||||||||| ||||||||||||  ||||||||| ||||||| ||||||| |||| | |||| | ||||    
T  9599620 atgcccgaaccacctaagcctattttctaccatcttttctactataggtgttactccaactctctctctaatgatgtcattcctaatcatatcccgtcta 9599719  T
Q  253 agcttaccacacattcaacacaac 276  Q
      |||||||| ||| |||||||||    
T  9599720 gtcttaccactcatccaacacaac 9599743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 36339915 - 36340093
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    |||| ||||||||||||| ||| ||||||||||| |||||||  ||||||||||||   |  ||  |||||||||||  |  | |||| ||||||||| |    
T  36339915 tttcctaatagtttctctgatagtttttctaggtcttcctctacctctagtgatct---aggtatcctccatctgatcaacccgccttactacaaaatct 36340011  T
Q  136 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 217  Q
    |  |||| |||| || |||| | |||||| ||||||||| |||||||| ||||||||| |||||||| |||  |||||||||    
T  36340012 ataggtcttctctctccatgtctaaaccacctaaacctattttccaccatcttttctaatataggtgctacaccaactctct 36340093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 240
Target Start/End: Original strand, 19908214 - 19908352
Alignment:
Q  102 ctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggt 201  Q
    |||||||||||||   |||||| ||||| ||| ||| |||  |||| || |||||||||| || |||||| | |||||| || |||||| || |||||||    
T  19908214 ctccatctgatttgctctccttactacataatctacaggttttctctctacatgcccaaatcacctaaacttggtttcccccatcttttttactataggt 19908313  T
Q  202 gttacctcaactctctatctaatgttgtcatttctaacc 240  Q
    | |||| ||||||||| | |||| |||||||||||||||    
T  19908314 gctaccacaactctctctttaattttgtcatttctaacc 19908352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 225
Target Start/End: Complemental strand, 26016602 - 26016421
Alignment:
Q  41 taatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacggg 140  Q
    ||||||||||||| ||| ||||||||||| | |   |  |||||||||||||   ||| | || |||||||| ||  |||||||||||| |||| |  ||    
T  26016602 taatagtttctcttatagtttttctaggtctactcttacctctagtgatctg---actccccttcatctgatctaatctccttgctacagaatgcatagg 26016506  T
Q  141 tcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatg 225  Q
    || |||  || ||| ||||||||| ||||| |||||||| ||| ||||||||  ||||||||||||| ||||||||| |||||||    
T  26016505 tcttctttctacatacccaaaccacctaaatctagtttctaccatcttttctcatataggtgttaccccaactctctctctaatg 26016421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 51440975 - 51441076
Alignment:
Q  137 cgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttct 236  Q
    |||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| ||||||||||||| | ||||||| ||||||| ||||||| ||    
T  51440975 cgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgttacccccactctctctctaatggtgtcattcct 51441074  T
Q  237 aa 238  Q
    ||    
T  51441075 aa 51441076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 13827705 - 13827844
Alignment:
Q  59 tttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgccc 158  Q
    ||||||||||| |||||||| |||||||||||||   |||| | ||||| |||| ||  |||||| ||||| ||| |||   || |||| || |||| ||    
T  13827705 tttttctaggtcttcctctgcctctagtgatctg---actatgttccatatgatctactctccttactacagaatctacacttcttctctctacatgtcc 13827801  T
Q  159 aaaccaactaaacctagtttccaccgtcttttctattataggt 201  Q
    |||||| || | ||||||||||||||||||||||| |||||||    
T  13827802 aaaccaccttaccctagtttccaccgtcttttctactataggt 13827844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 1210819 - 1210716
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||     
T  1210819 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattc 1210720  T
Q  235 ctaa 238  Q
    ||||    
T  1210719 ctaa 1210716  T

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Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 9509388 - 9509289
Alignment:
Q  139 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||| |||| || ||||||||||| | |||| |||| |||  ||| ||||||||| |||||||| |||| ||||||||| ||||||| ||||||||||||    
T  9509388 ggtcttctctctacatgcccaaactacctaagcctattttttaccatcttttctactataggtgctaccccaactctctctctaatggtgtcatttctaa 9509289  T

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Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 202
Target Start/End: Complemental strand, 5338883 - 5338731
Alignment:
Q  47 tttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgggtcatct 146  Q
    ||||||| ||| ||||||||||| | | |||| |||||||||||||   | ||  ||||||||||| ||  |||||| ||| |  || ||| |||| |||    
T  5338883 tttctcttatagtttttctaggtctacttctgcctctagtgatctg---aatatcctccatctgatctactctccttactaaagcatctacaggtcttct 5338787  T
Q  147 cactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtg 202  Q
    | |||||||||||||||| |||| |  |||||||||| ||||||||| ||||||||    
T  5338786 ctctgcatgcccaaaccacctaagctcagtttccaccatcttttctactataggtg 5338731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 4380002 - 4379938
Alignment:
Q  212 ctctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 276  Q
    |||||| |||||||||||||||||||| | ||||| |||||  |||||||||||| |||||||||    
T  4380002 ctctctctctaatgttgtcatttctaatcatatcttttctagtcttaccacacatccaacacaac 4379938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 238
Target Start/End: Original strand, 32404638 - 32404836
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    |||| ||||||||||||| ||| ||||| ||||| |||||||  |||| ||||| ||   ||||  ||||||||  | ||  |||||| ||| | ||| |    
T  32404638 tttcctaatagtttctcttatagtttttgtaggtcttcctctacctcttgtgatatg---actatcctccatcttctctactctccttactatagaatct 32404734  T
Q  136 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 235  Q
    || |||| |||| || |||  |||||||| |||| |||| |||||||| |||||| || ||||||||||||| |||||| || || ||||||||| ||||    
T  32404735 acaggtcttctctctacatatccaaaccacctaagcctattttccaccatcttttttactataggtgttacc-caactcactctcgaatgttgtcgtttc 32404833  T

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Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 3818968 - 3819146
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    |||||||||||||||||| ||| |||||| |||| ||||||| ||||||||| | ||   | ||| ||||||||||| ||  ||| || ||| | |||      
T  3818968 tttcttaatagtttctcttatagtttttcaaggtcttcctctttctctagtggtttg---attaccctccatctgatctactctctttactagagaatcc 3819064  T
Q  136 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 217  Q
    ||  ||| |||  || |||||||||||||  |||  |||||| ||||| |||||||||  ||||||| ||||||||||||||    
T  3819065 acaagtcttctttctacatgcccaaaccacttaagtctagttaccaccatcttttctaccataggtgctacctcaactctct 3819146  T

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Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 34792557 - 34792660
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| | |||||     
T  34792557 tacgggtcttctctctacatgcccaaaccatctaagcctactttctaccaacttttctactataggtgctacccccactctctctctaatggtttcattc 34792656  T
Q  235 ctaa 238  Q
    ||||    
T  34792657 ctaa 34792660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 192
Target Start/End: Complemental strand, 8796379 - 8796226
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    |||||||||||||||||| | | ||||| | ||| |||||||| |||||||||||||   ||||  ||||||| ||||||  |||||| |||| |||  |    
T  8796379 tttcttaatagtttctcttaaagtttttattggtcttcctctgcctctagtgatctg---actatcctccatccgatttactctccttactacgaaacct 8796283  T
Q  136 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttct 192  Q
    ||  ||| | || || |||| |||||||| ||||||||| |||||||| | ||||||    
T  8796282 acatgtcttatctctacatgtccaaaccacctaaacctattttccaccttgttttct 8796226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 200
Target Start/End: Original strand, 48431518 - 48431679
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    |||||||||||||||||| ||| ||||| | ||| |||||||  |||| || ||| |   ||||  |||||||||||  |  ||| || ||||||||| |    
T  48431518 tttcttaatagtttctcttatagtttttttgggtcttcctctacctcttgtaatccg---actatcctccatctgatcaactctctttactacaaaatct 48431614  T
Q  136 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattatagg 200  Q
    ||  ||| |||| || ||||||||||||| |||| |||| |||||||| ||||||||| ||||||    
T  48431615 acaagtcttctctctacatgcccaaaccacctaagcctattttccaccatcttttctactatagg 48431679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 276
Target Start/End: Original strand, 27848017 - 27848153
Alignment:
Q  139 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||| |||| |||||||||||||||| |||| | || |||| ||| |||||||||  | ||||| |||| ||||||||| ||||||| ||| ||| |||     
T  27848017 ggtcttctctctgcatgcccaaaccacctaagcttattttctaccatcttttctaccacaggtgctaccacaactctctctctaatggtgttattcctat 27848116  T
Q  239 ccgtatctcttctaagcttaccacacattcaacacaac 276  Q
    || |||| | ||||  |||||||| ||| |||||||||    
T  27848117 cc-tatcccgtctagtcttaccactcatccaacacaac 27848153  T

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Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 35828780 - 35828861
Alignment:
Q  157 ccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||||||| |||| |||| |||||||| |||||||||  ||||||| |||   |||||||| |||||| |||||||||||||    
T  35828780 ccaaaccacctaaccctattttccaccatcttttctaccataggtgctactcaaactctctctctaatattgtcatttctaa 35828861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 271
Target Start/End: Complemental strand, 40419730 - 40419577
Alignment:
Q  118 ctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 217  Q
    |||||||||||| |||  ||  ||| |||| || |||||||||||||  |||  |||||| | ||| ||| ||||| |||| ||  |||| |||||||||    
T  40419730 ctccttgctacataatccacatgtcttctctctacatgcccaaaccacttaagtctagttactaccatctattctactataagttctaccccaactctct 40419631  T
Q  218 atctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaac 271  Q
     ||||||||||||||||||||   |||||| ||||   |||||| |||||||||    
T  40419630 ctctaatgttgtcatttctaattctatctcatctagttttaccatacattcaac 40419577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 276
Target Start/End: Complemental strand, 1661500 - 1661359
Alignment:
Q  139 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatt----t 234  Q
    |||| |||| || ||||| ||||||| || | |||| |||||||| ||||||||| |||||||| |||| ||||||||| || ||| ||||||||    |    
T  1661500 ggtcttctctctacatgctcaaaccatctgagcctattttccaccatcttttctactataggtgctaccccaactctctctcaaatattgtcattcattt 1661401  T
Q  235 ctaaccgtatctcttctaagcttaccacacattcaacacaac 276  Q
    |||| | |||| | ||||  |||| || ||||||||||||||    
T  1661400 ctaatcctatcacatctagtcttatcagacattcaacacaac 1661359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 275
Target Start/End: Complemental strand, 16943228 - 16943109
Alignment:
Q  155 gcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaag 254  Q
    |||||||||| ||||| |||||||||||| ||||||||| |||||||  |||| |||||||||  ||||| |||| || |||||   |||||| ||||      
T  16943228 gcccaaacca-ctaaatctagtttccaccatcttttctactataggtactaccccaactctctccctaatattgtaatgtctaattttatctcgtctagt 16943130  T
Q  255 cttaccacacattcaacacaa 275  Q
    |||| ||| ||| ||||||||    
T  16943129 cttatcacgcatccaacacaa 16943109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 7921892 - 7921837
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacc 207  Q
    |||| ||||||||  ||||||||||||||||| ||||||||| ||||||| |||||    
T  7921892 catgtccaaaccacataaacctagtttccaccatcttttctactataggttttacc 7921837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 8343070 - 8343149
Alignment:
Q  139 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctcta 218  Q
    |||| |||| || ||||||||  ||| |||| ||||||||||||| ||||||||| || |||||||||| |||| |||||    
T  8343070 ggtcttctctctacatgcccagtccacctaagcctagtttccaccatcttttctactaaaggtgttaccccaacactcta 8343149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 22090170 - 22090088
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 217  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | |||||||    
T  22090170 tacgggtcttctccctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctct 22090088  T

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Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 32231179 - 32231265
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    ||||||||||||| |||| |||| |||| |||   ||||||| |||||||| |||| | ||||||| ||||||| ||||||| ||||    
T  32231179 catgcccaaaccatctaagcctattttctaccaatttttctactataggtgctacccccactctctctctaatggtgtcattcctaa 32231265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 238
Target Start/End: Original strand, 38877478 - 38877652
Alignment:
Q  59 tttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgccc 158  Q
    |||| |||||| |||||||| || ||||||| ||   ||||| ||||||||  | ||  ||||||||| |||||| ||| ||||||||| || |||||      
T  38877478 ttttcctaggtcttcctctgcctatagtgatttg---actacactccatctagtctaccctccttgctgcaaaatctacaggtcatctctctacatgctt 38877574  T
Q  159 aaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||||| |||| || | |||  ||  |||||||||| |||| || || | |||||||||  |||||||||||||||||||    
T  38877575 aaaccacctaagccgaatttttacaatcttttctatgatagatgctaacccaactctct--ctaatgttgtcatttctaa 38877652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 8342997 - 8343046
Alignment:
Q  40 ttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 89  Q
    ||||| |||||||| ||| ||||||||||| ||||||| |||||||||||    
T  8342997 ttaattgtttctcttatagtttttctaggtcttcctctatctctagtgat 8343046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 43375829 - 43375889
Alignment:
Q  177 ttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    ||||||||||||||| | ||||||| ||||| |||||||||  ||||| |||||||||||||    
T  43375829 ttccaccgtcttttcaactataggt-ttaccccaactctcttcctaatattgtcatttctaa 43375889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 8671992 - 8671891
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    ||||| || |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||  ||||||| |||||||     
T  8671992 tacggatcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctc--tctaatggtgtcattc 8671895  T
Q  235 ctaa 238  Q
    ||||    
T  8671894 ctaa 8671891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 10272427 - 10272375
Alignment:
Q  37 ttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 89  Q
    ||||||||||||||||| |||| |||||||||| |||| ||  ||||||||||    
T  10272427 ttcttaatagtttctcttataagttttctaggtcttcccctacctctagtgat 10272375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 13827948 - 13827992
Alignment:
Q  158 caaaccaactaaacctagtttccaccgtcttttctattataggtg 202  Q
    ||||||| |||| ||||||||||||| ||||||||| ||||||||    
T  13827948 caaaccacctaaccctagtttccaccatcttttctactataggtg 13827992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 39422287 - 39422390
Alignment:
Q  172 ctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaac 271  Q
    |||||||| ||  ||||||||| |||| |||||||  ||||||||| |||||| |||||||||||||   |||||| | ||| | ||||||||||  |||    
T  39422287 ctagtttctactatcttttctactatatgtgttactccaactctct-tctaatattgtcatttctaattctatctcatataatcctaccacacatctaac 39422385  T
Q  272 acaac 276  Q
    |||||    
T  39422386 acaac 39422390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 51602130 - 51602058
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacc 207  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| ||||    
T  51602130 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 51602058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 52442781 - 52442853
Alignment:
Q  204 tacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 276  Q
    |||| ||||||||| || |||||| |||||||||| | |||||  ||||  |||||||||||| |||||||||    
T  52442781 taccccaactctctctccaatgttctcatttctaatcttatcttgtctagtcttaccacacatccaacacaac 52442853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 33709981 - 33709895
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||||| |||||| |||||||||||||||||| ||||||||| ||||||||||||| ||||||||| |||||||||| |||||||||    
T  33709981 catgcctaaaccacctaaacctagtttccaccatcttttctactataggtgttaccccaactctctctctaatgttgccatttctaa 33709895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 266
Target Start/End: Complemental strand, 54470373 - 54470150
Alignment:
Q  40 ttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgg 139  Q
    ||||||| |||||| ||| ||||||| ||| ||| | || ||||||| || ||   ||||| |||||| |||||||  |||||| ||||| ||| |||      
T  54470373 ttaatagattctcttatagtttttcttggtcttcttttgcctctagtaatttg---actactctccatttgatttactctccttactacataatttacat 54470277  T
Q  140 gtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaac 239  Q
    ||| |||| || |||||||||||||  |||  |||||||||||| ||||||||| |||||||| |||| ||||||||| ||||||||||| ||||| ||     
T  54470276 gtcttctctctacatgcccaaaccacttaagtctagtttccaccatcttttctactataggtgctaccccaactctctctctaatgttgttatttcaaat 54470177  T
Q  240 cgtatctcttctaagcttaccacacat 266  Q
    | |||| | ||||  ||||||||||||    
T  54470176 catatcccatctagtcttaccacacat 54470150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 152 - 276
Target Start/End: Complemental strand, 49987485 - 49987361
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttct 251  Q
    |||| |||||||| |||| |||| |||||||| ||||||||| ||||||||| |||   |||||||||||||||||||||||||||| | ||||   |||    
T  49987485 catgaccaaaccacctaagcctattttccaccatcttttctactataggtgtgacccagactctctatctaatgttgtcatttctaatcctatcatgtct 49987386  T
Q  252 aagcttaccacacattcaacacaac 276  Q
    |  ||||| | ||||||||||||||    
T  49987385 agtcttactaaacattcaacacaac 49987361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 275
Target Start/End: Original strand, 51252686 - 51252807
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttct 251  Q
    |||||||| |||| |||| ||||||||||||| ||||||||| || ||||| |||| ||||||||  |||||||| ||||||||||| | |||||| |||    
T  51252686 catgcccataccacctaagcctagtttccaccatcttttctactagaggtgctaccccaactctc--tctaatgtagtcatttctaatcctatctcgtct 51252783  T
Q  252 aagcttaccacacattcaacacaa 275  Q
    |  ||||| ||||||  |||||||    
T  51252784 agtcttacgacacatctaacacaa 51252807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 10775667 - 10775733
Alignment:
Q  172 ctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||||||| ||| ||||||||| ||||||||||||| |||| |||| ||||||||||||||||||||    
T  10775667 ctagtttctaccatcttttctactataggtgttaccccaacactctctctaatgttgtcatttctaa 10775733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 44047573 - 44047659
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||| |||||||| |||| ||||| ||| |||  |||||||| |||||||| |||| ||||||||| ||||||||||||||||||||    
T  44047573 catgtccaaaccacctaagcctagattctaccaccttttctactataggtgctaccccaactctctctctaatgttgtcatttctaa 44047659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 53707868 - 53707770
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatt 233  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||||| ||||||| ||||||| |||||||    
T  53707868 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacctccactctctttctaatggtgtcatt 53707770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 276
Target Start/End: Complemental strand, 56375364 - 56375223
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| || ||||||||||||| |||| |||  |||| |||  ||||||||||||||||| |||| | ||||||| ||||||| |||||||     
T  56375364 tacgggtcttctctctacatgcccaaaccatctaagcctgttttctaccaacttttctattataggtgctacccctactctctctctaatggtgtcattc 56375265  T
Q  235 ctaaccgtatctcttctaagcttaccacacattcaacacaac 276  Q
    |||| | |||||  ||||  |||||||| ||| |||| ||||    
T  56375264 ctaatcttatcttgtctagtcttaccactcatccaacgcaac 56375223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 25257793 - 25257890
Alignment:
Q  139 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||| |||| || ||||| ||||||| ||||  |||| ||| ||| |||||| |||| ||||||||||||||||||||  ||||||||||||||||||||    
T  25257793 ggtcttctctctacatgctcaaaccacctaagtctagcttctaccatcttttatattgtaggtgttacctcaactctc--tctaatgttgtcatttctaa 25257890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 13805377 - 13805507
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    |||||| ||||||||||| ||| ||||||||||| |||||||| |||||||||||||   || |  |||||| |||| ||  |||||||||||||||| |    
T  13805377 tttcttcatagtttctcttatagtttttctaggttttcctctgcctctagtgatctg---acaatcctccatgtgatctagtctccttgctacaaaatct 13805473  T
Q  136 acgggtcatctcactgcatgcccaaaccaactaa 169  Q
    |  |||| |||| || ||| ||||||||| ||||    
T  13805474 aaaggtcttctctctacatacccaaaccacctaa 13805507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 31960022 - 31960125
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||     
T  31960022 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattc 31960121  T
Q  235 ctaa 238  Q
    ||||    
T  31960122 ctaa 31960125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 48174301 - 48174404
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| || |||||||||| || |||| |||| |||| |||  |||||||| ||||||||||||| | ||||||| ||||||| |||||||     
T  48174301 tacgggtcttctctctacatgcccaaatcatctaagcctattttctaccaacttttctactataggtgttacccccactctctctctaatggtgtcattc 48174400  T
Q  235 ctaa 238  Q
    ||||    
T  48174401 ctaa 48174404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 52569723 - 52569826
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||     
T  52569723 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattc 52569822  T
Q  235 ctaa 238  Q
    ||||    
T  52569823 ctaa 52569826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 37797909 - 37797823
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||| |||||||| |||| |||| |||| |||  |||||||| |||||||| |||||| ||||||| ||||||| ||||||||||||    
T  37797909 catgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacctccactctctctctaatggtgtcatttctaa 37797823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 45569120 - 45569174
Alignment:
Q  35 ttttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 89  Q
    ||||||||||||||||||| ||||| ||||||||| |||||||| ||||||||||    
T  45569120 ttttcttaatagtttctcttataatgtttctaggtcttcctctgcctctagtgat 45569174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 276
Target Start/End: Complemental strand, 17900517 - 17900413
Alignment:
Q  172 ctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaac 271  Q
    |||||||| ||||||||||||| |||||||| |||| ||||||  | |||||||| |||||||||||   |||| | ||||  |||||||||||| ||||    
T  17900517 ctagtttctaccgtcttttctactataggtgctaccccaactccgtctctaatgtcgtcatttctaattttatcccatctagtcttaccacacatccaac 17900418  T
Q  272 acaac 276  Q
     ||||    
T  17900417 gcaac 17900413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 276
Target Start/End: Original strand, 38570972 - 38571095
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttct 251  Q
    ||||||||||||| |||| ||||||||||||  |||||| || |||||||| | || || |||||| || |||||||||||||| || | |||||  |||    
T  38570972 catgcccaaaccacctaagcctagtttccactatcttttgtactataggtgcttccccagctctctctcaaatgttgtcatttccaatcctatcttgtct 38571071  T
Q  252 aagcttaccacacattcaacacaac 276  Q
     ||  |||||||||| |||||||||    
T  38571072 -agtgtaccacacatccaacacaac 38571095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 49987578 - 49987526
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtga 88  Q
    |||||||||||||||||| ||| ||||||||||| |||||||| |||||||||    
T  49987578 tttcttaatagtttctcttatagtttttctaggtcttcctctgcctctagtga 49987526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 238
Target Start/End: Complemental strand, 10209141 - 10209009
Alignment:
Q  102 ctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggt 201  Q
    ||||||||||| ||  |||||| ||| |||||  || |||| |||| || ||||||||||||||||||   |||||||  || ||||||||| |||||||    
T  10209141 ctccatctgatctactctccttactaaaaaattcacaggtcttctcgctacatgcccaaaccaactaagtttagtttctgccatcttttctactataggt 10209042  T
Q  202 gttacctcaactctctatctaatgttgtcatttctaa 238  Q
      |||| ||||||    ||||||||||||||||||||    
T  10209041 tctaccccaactc----tctaatgttgtcatttctaa 10209009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 266
Target Start/End: Complemental strand, 20999034 - 20998955
Alignment:
Q  187 ttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacat 266  Q
    ||||||| ||||||||||||| |||||| ||||||||| || |||||||||| | |||||| ||||  ||||| ||||||    
T  20999034 ttttctagtataggtgttaccccaactccctatctaatattatcatttctaatcctatctcgtctagtcttacaacacat 20998955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 31403250 - 31403369
Alignment:
Q  160 aaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctat----ctaatgttgtcatttctaaccgtatctcttctaagc 255  Q
    ||||| |||| ||||||||||||| | ||||||| |||||||| |||| ||||||| | |    ||||||||||||||||||| | |||| | ||||| |    
T  31403250 aaccacctaagcctagtttccaccat-ttttctactataggtgctaccccaactctatctgtctctaatgttgtcatttctaatcctatcccgtctaatc 31403348  T
Q  256 ttaccacacattcaacacaac 276  Q
    | |||||||||||||| ||||    
T  31403349 tcaccacacattcaactcaac 31403369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 129
Target Start/End: Complemental strand, 47147543 - 47147453
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctaca 129  Q
    ||||||||||||||||   ||| ||||||||||| |||||||| |||||||||||   | ||||| ||||||||||||||  |||||| |||||    
T  47147543 tttcttaatagtttcttctatagtttttctaggtcttcctctgcctctagtgatc---cgactactctccatctgatttactctccttactaca 47147453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 33227283 - 33227185
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatt 233  Q
    |||||||| |||| || ||||||||||| | |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||    
T  33227283 tacgggtcttctctctacatgcccaaacaatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcatt 33227185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 34233142 - 34233192
Alignment:
Q  42 aatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 92  Q
    |||||||||||| ||| ||||||||||| |||||||| |||||||||||||    
T  34233142 aatagtttctctgatagtttttctaggttttcctctgcctctagtgatctg 34233192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 276
Target Start/End: Original strand, 43070014 - 43070113
Alignment:
Q  173 tagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaaca 272  Q
    ||||||||||| || |||||| |||||| | |||||||||||    |||||||||||||||||||| | ||||   ||||| |||||||||||| ||||     
T  43070014 tagtttccaccatcatttctactataggcgctacctcaactc----tctaatgttgtcatttctaatcctatcctgtctaatcttaccacacatccaacc 43070109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 50662437 - 50662322
Alignment:
Q  159 aaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagctta 258  Q
    |||||| |||| |||| |||||||| ||||||||| |||||||||| ||  ||||||||  |||||| ||||||||| || | |||||| | ||  ||||    
T  50662437 aaaccacctaagcctactttccaccatcttttctactataggtgttgcccaaactctct--ctaatgctgtcatttccaatcctatctcatatagtctta 50662340  T
Q  259 ccacacattcaacacaac 276  Q
    |||||||| | |||||||    
T  50662339 ccacacatcctacacaac 50662322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 174 - 276
Target Start/End: Complemental strand, 45423650 - 45423552
Alignment:
Q  174 agtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacac 273  Q
    |||||| ||| |||||||||||||||||| |||||||||||    | ||||||||||||||||||   |||| | ||||  |||||||||||  ||||||    
T  45423650 agtttctaccatcttttctattataggtgctacctcaactc----tataatgttgtcatttctaattctatcccgtctagtcttaccacacaaccaacac 45423555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 50680789 - 50680672
Alignment:
Q  159 aaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagctta 258  Q
    |||||| |||| |||| |||||||| ||||||| | |||||||||| ||  |||||||| ||||||||||| ||||| || | ||| || | ||  |||     
T  50680789 aaaccacctaagcctattttccaccatcttttcaactataggtgttgccctaactctctctctaatgttgttatttccaatcctatgtcatatagtcttg 50680690  T
Q  259 ccacacattcaacacaac 276  Q
    | ||||||||||||||||    
T  50680689 ctacacattcaacacaac 50680672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 50471596 - 50471499
Alignment:
Q  139 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||| |||| || |||||||||||||  ||||||||||||||||| ||||||||| |||  ||| |||| | | ||||  |||||||||||||| |||||    
T  50471596 ggtcttctctctacatgcccaaaccacttaaacctagtttccaccatcttttctactattagtgctaccccgagtctc--tctaatgttgtcatctctaa 50471499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 53540460 - 53540404
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 92  Q
    |||| ||||||||| ||| ||| ||||||||||| |||||||| |||||||||||||    
T  53540460 tttcctaatagtttatcttatagtttttctaggtcttcctctgcctctagtgatctg 53540404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 28236240 - 28236156
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    ||||||||||||| |||| |||| ||||||||  |||||||| |||||||| |||| | ||||||  ||||||| ||||||| ||||    
T  28236240 catgcccaaaccatctaagcctattttccaccaacttttctactataggtgctacccccactctc--tctaatggtgtcattcctaa 28236156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 238
Target Start/End: Complemental strand, 28497596 - 28497459
Alignment:
Q  102 ctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggt 201  Q
    ||||||||||| ||  |||||| ||||| ||| |||  ||| |||| || ||||||||||||| |||| |||  |||||||  ||||||||| || ||||    
T  28497596 ctccatctgatctactctccttactacataatctacaagtcttctctctacatgcccaaaccacctaagcct-ttttccacaatcttttctactaaaggt 28497498  T
Q  202 gttacctcaa--ctctctatctaatgttgtcatttctaa 238  Q
    | |||| |||  |||||| ||| ||||||||||||||||    
T  28497497 gctaccccaactctctctctctgatgttgtcatttctaa 28497459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 31459087 - 31459024
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactct 215  Q
    ||||||||||||| |||| |||| |||| ||| ||||||||| |||||||| |||||| |||||    
T  31459087 catgcccaaaccacctaagcctattttctaccatcttttctactataggtgctacctcgactct 31459024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 33191056 - 33191159
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| || ||||||||||| | ||||  ||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||     
T  33191056 tacgggtcttctctctacatgcccaaacaatctaagtctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattc 33191155  T
Q  235 ctaa 238  Q
    ||||    
T  33191156 ctaa 33191159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 276
Target Start/End: Complemental strand, 44360124 - 44360016
Alignment:
Q  172 ctagtttccaccgtcttttctattataggtgttacctcaactctct----atctaatgttgtcatttctaaccgtatctcttctaagcttaccacacatt 267  Q
    |||||||| ||| ||||||||| |||||||| |||| |||||||||    ||||||| |||||||||||||   ||||||  |||  | ||||||||||     
T  44360124 ctagtttctaccatcttttctactataggtgataccccaactctctctccatctaatattgtcatttctaattctatctcgcctagtcctaccacacatc 44360025  T
Q  268 caacacaac 276  Q
    |||||||||    
T  44360024 caacacaac 44360016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 238
Target Start/End: Original strand, 46715563 - 46715678
Alignment:
Q  118 ctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 217  Q
    |||||||||||| |||  ||  ||| |||| || |||||||| |||| |||| ||||||||||||| |||||||||  |||||||    |||  ||||||    
T  46715563 ctccttgctacataatccacatgtcttctctctacatgcccacaccacctaagcctagtttccaccatcttttctacaataggtg----ctc-tctctct 46715657  T
Q  218 atctaatgttgtcatttctaa 238  Q
     ||||||||||||||||||||    
T  46715658 ctctaatgttgtcatttctaa 46715678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 7682021 - 7682075
Alignment:
Q  35 ttttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 89  Q
    ||||||| ||||||||||| ||| |||||| |||| |||||||| ||||||||||    
T  7682021 ttttcttgatagtttctcttatagtttttccaggtcttcctctgcctctagtgat 7682075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 43433998 - 43433916
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 217  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | |||||||    
T  43433998 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctct 43433916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 47265410 - 47265508
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatt 233  Q
    |||| ||| |||| || |||||||||| || ||||||||| |||| ||   |||||||| ||||||||||||| | ||||||| | ||||| |||||||    
T  47265410 tacgtgtcttctctctacatgcccaaatcatctaaacctattttctactaccttttctactataggtgttacccccactctctctataatggtgtcatt 47265508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 33225945 - 33225978
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggt 69  Q
    |||||||||||||||||| |||||||||||||||    
T  33225945 tttcttaatagtttctcttataatttttctaggt 33225978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 38865758 - 38865803
Alignment:
Q  41 taatagtttctctcataatttttctaggtgttcctctgtctctagt 86  Q
    ||||||||||||||||| |||||||| || ||||| ||||||||||    
T  38865758 taatagtttctctcatagtttttctacgtcttcctatgtctctagt 38865803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 2588970 - 2588914
Alignment:
Q  220 ctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 276  Q
    ||||||||||||||||||| | |||| ||||||  |||||||||||| |||| ||||    
T  2588970 ctaatgttgtcatttctaatcctatcccttctagtcttaccacacatccaacgcaac 2588914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 276
Target Start/End: Original strand, 34233291 - 34233382
Alignment:
Q  187 ttttctattataggtgttacctcaactctctatct--aatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 276  Q
    ||||||| |||||||| || | |||||||||||||  ||||||||| ||||||| | |||| | ||||  |||| ||||||| |||||||||    
T  34233291 ttttctactataggtgctatcccaactctctatctctaatgttgtcgtttctaatcctatcacatctagtcttatcacacatccaacacaac 34233382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 35555873 - 35555937
Alignment:
Q  153 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 217  Q
    |||||||||||| ||||  |||||||| ||| ||||||||| |||||||| ||||  ||||||||    
T  35555873 atgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctacccgaactctct 35555937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 37488261 - 37488205
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 92  Q
    |||||||||||||||||| ||| ||||||||||| | |||||| || | ||||||||    
T  37488261 tttcttaatagtttctcttatagtttttctaggtctacctctgcctatggtgatctg 37488205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 37773659 - 37773731
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacc 207  Q
    |||||||| |||  || ||||||||||||| |||| |||| |||| |||| |||||||| |||||||| ||||    
T  37773659 tacgggtcgtctatctacatgcccaaaccatctaagcctattttctaccgacttttctactataggtgctacc 37773731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 41192920 - 41192828
Alignment:
Q  125 ctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 217  Q
    ||||| ||| ||| |||| |||| || ||||| |||| || ||||  |||||||||||| ||||||||| | |||||| |||| |||||||||    
T  41192920 ctacagaatctacaggtcttctctctacatgcacaaatcacctaagtctagtttccaccatcttttctactgtaggtgctaccccaactctct 41192828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 48622751 - 48622852
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| ||| |||| |||| | ||||||  ||||||| |||||||     
T  48622751 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactatgggtgctacccccactctc--tctaatggtgtcattc 48622848  T
Q  235 ctaa 238  Q
    ||||    
T  48622849 ctaa 48622852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 35 - 238
Target Start/End: Original strand, 7359371 - 7359570
Alignment:
Q  35 ttttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatg 134  Q
    |||||| |||||||||||| ||  ||||||||||  |||||||| |||||||||| ||   ||||  ||||||||||| ||  |||||| ||||| |||     
T  7359371 ttttctaaatagtttctcttatggtttttctaggctttcctctgcctctagtgatatg---actatcctccatctgatctactctccttactacagaatc 7359467  T
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||   || |||| || |||||| |||||| ||||||||| |||||||| | ||||||| |||||||||||||| |||||||| |||||  |||||||||    
T  7359468 tacatatcttctctctacatgcc-aaaccacctaaacctattttccaccatattttctactataggtgttacctgaactctctctctaacattgtcattt 7359566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 247
Target Start/End: Complemental strand, 14749476 - 14749269
Alignment:
Q  37 ttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgta 136  Q
    ||||| ||||||||||| ||| ||||||||||| |||||||| || ||||||| ||   ||| | |||||||||||  |  |||||| | ||| |||  |    
T  14749476 ttcttgatagtttctcttatagtttttctaggtcttcctctgcctttagtgatttg---actcccctccatctgatcgactctccttacaacagaatcca 14749380  T
Q  137 cgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttct 236  Q
    | |||| |||| || |||| |||||||| ||||  |||||||| |||   ||||||| |||||||| |||  ||||||||| ||||||||| ||||||||    
T  14749379 caggtcttctctctacatgtccaaaccatctaagtctagtttctaccaatttttctactataggtgctacaccaactctctctctaatgttttcatttct 14749280  T
Q  237 aaccgtatctc 247  Q
    || | ||||||    
T  14749279 aatcctatctc 14749269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 234
Target Start/End: Original strand, 31636033 - 31636225
Alignment:
Q  37 ttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgta 136  Q
    ||||| ||||||||||| ||| ||||||||| | |||| || ||||||||||| ||   ||| | | |||||| || ||  |||||| |||||| ||  |    
T  31636033 ttcttgatagtttctctaatagtttttctagatcttcccctatctctagtgatttg---actccccaccatctaatctactctccttactacaacatcca 31636129  T
Q  137 cgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||| |||| || ||||||||||||| ||||  |||||||| ||| ||||||||| |||||||| |||| ||||| ||  ||||||| ||||||||    
T  31636130 cgggtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaactttc--tctaatgctgtcattt 31636225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 36 - 237
Target Start/End: Original strand, 15489604 - 15489802
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    |||||||||||||||||| ||  ||||||||||| |||||||| ||||||||||    ||||||  |||||||| || ||  ||||||  |||||||| |    
T  15489604 tttcttaatagtttctcttattgtttttctaggtcttcctctgcctctagtgat---tcaactatcctccatctaatctactctccttaatacaaaatct 15489700  T
Q  136 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 235  Q
    ||   || |||| || ||||||||||||| |||| |  |||||| ||| |||||||||  ||||||  |||| ||||||||| |||||| || |||| ||    
T  15489701 acaaatcttctctctacatgcccaaaccatctaagctgagtttcaaccatcttttctacaataggtactaccccaactctctctctaatcttatcatgtc 15489800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 102 - 202
Target Start/End: Complemental strand, 43475347 - 43475247
Alignment:
Q  102 ctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggt 201  Q
    ||||||||||| ||  |||||| |||||| || ||| |||| |||| ||| || ||||||||| |||| ||||||||||||| ||||||||| |||||||    
T  43475347 ctccatctgatctactctccttactacaacatctacaggtcttctctctgaatacccaaaccacctaagcctagtttccaccatcttttctactataggt 43475248  T
Q  202 g 202  Q
    |    
T  43475247 g 43475247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 2075682 - 2075785
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| || ||||||||||||| |||| |||| | || |||  |||||||| | ||||||||||| | ||||||| |||||||||||||||     
T  2075682 tacgggtcttctctctacatgcccaaaccatctaagcctattgtctaccaacttttctactgtaggtgttacccccactctctctctaatgttgtcattc 2075781  T
Q  235 ctaa 238  Q
    ||||    
T  2075782 ctaa 2075785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 217
Target Start/End: Complemental strand, 2713113 - 2712936
Alignment:
Q  37 ttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgta 136  Q
    ||||||||||||||||| ||| ||||||||||| |||| ||| |||||||||| ||   |||   ||||||||||| ||  ||||||  |||| |||  |    
T  2713113 ttcttaatagtttctcttatagtttttctaggtcttcccctgactctagtgatttg---actctcctccatctgatctactctccttcatacagaatcca 2713017  T
Q  137 cgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 217  Q
    | |||| |||| || ||||||||||||| ||||  ||||| || ||| ||||||  | |||||||| |||| |||||||||    
T  2713016 caggtcttctctctacatgcccaaaccacctaagtctagtctctaccatcttttagactataggtgctaccccaactctct 2712936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 32516606 - 32516491
Alignment:
Q  159 aaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagctta 258  Q
    |||||| |||| |||| |||||||| ||||||||| |||| |||||||  |||||||||  |||||||||||||||||||   ||||   ||||  ||||    
T  32516606 aaaccacctaagcctattttccaccatcttttctactataagtgttactccaactctct--ctaatgttgtcatttctaagtctatcctgtctagtctta 32516509  T
Q  259 ccacacattcaacacaac 276  Q
    |||||||| |||||||||    
T  32516508 ccacacatccaacacaac 32516491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 33667286 - 33667189
Alignment:
Q  139 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||| |||| || ||||||||||||| ||||  |||||||| ||| ||||||||| |||||||| |||| ||||||||    ||||||||||||||||||    
T  33667286 ggtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaactctc--gttaatgttgtcatttctaa 33667189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 4496458 - 4496355
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||| | |||||||     
T  4496458 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccagcttttctactataggtgctacccccactctctctctaaaggtgtcattc 4496359  T
Q  235 ctaa 238  Q
    ||||    
T  4496358 ctaa 4496355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 193
Target Start/End: Complemental strand, 42199456 - 42199302
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    ||||| |||||||| ||| ||| ||||||||||| || ||||  | |||||||| ||   ||||| |||||| |||| ||  |||||| ||||| ||| |    
T  42199456 tttctaaatagtttgtctaatagtttttctaggtctttctctccccctagtgatttg---actactctccatgtgatctactctccttactacagaatct 42199360  T
Q  136 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttcta 193  Q
    ||  ||| |||| || ||||||||||||| ||||  |||||||||||| |||||||||    
T  42199359 acatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttcta 42199302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 24178584 - 24178486
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatt 233  Q
    |||||||| |||| |  ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||    
T  24178584 tacgggtcttctctccacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcatt 24178486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 271
Target Start/End: Complemental strand, 6889163 - 6888931
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    |||| ||||||||||||| ||| ||||||||||  |||||||  ||| |||| | ||   ||||  |||||||| ||||||  ||||| | ||| |||      
T  6889163 tttcctaatagtttctcttatagtttttctaggccttcctcttcctcaagtggtttg---actatcctccatctaatttattgtccttaccacataatcc 6889067  T
Q  136 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 235  Q
    ||  ||| |||| || |||| ||||||||  ||| |||| |||||||| |||||||   |||| ||| |||| ||||||| | | |||| ||||||||||    
T  6889066 acaagtcttctctctacatgtccaaaccacttaagcctattttccaccatcttttcctctatacgtgctaccccaactctttctgtaatattgtcatttc 6888967  T
Q  236 taaccgtatctcttctaagcttaccacacattcaac 271  Q
    ||| | |||||| ||||  |||||||||||| ||||    
T  6888966 taatcatatctcatctagtcttaccacacatccaac 6888931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 9235217 - 9235163
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 92  Q
    ||||||||||||||||||  || ||||||||||| |||||||| |||||||||||||    
T  9235217 tttcttaatagtttctct--tagtttttctaggtcttcctctgcctctagtgatctg 9235163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 234
Target Start/End: Original strand, 18351134 - 18351215
Alignment:
Q  153 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||||||| |||| ||||||||| ||| | ||||||| |||||||| |||| ||||| | | || |||||||||||||    
T  18351134 atgcccaaaccacctaagcctagtttctaccatattttctactataggtgctaccccaactatatgtccaatgttgtcattt 18351215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 43558053 - 43558133
Alignment:
Q  153 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaa--ctctctatctaatgttgtca 231  Q
    |||||||||||| |||| | ||||||||||| ||||||||||||||| || ||||  ||  |||||| |||||||||||||    
T  43558053 atgcccaaaccacctaagcttagtttccaccatcttttctattatagatgctaccctaactctctctctctaatgttgtca 43558133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 266
Target Start/End: Complemental strand, 30588505 - 30588396
Alignment:
Q  153 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttcta 252  Q
    ||||||||||||  |||||||| |||||||| ||||||||||||||  ||||||   |||||    |||||| ||||||||||||| | |||||| | |     
T  30588505 atgcccaaaccacttaaacctattttccaccatcttttctattatacatgttactctaactc----tctaatattgtcatttctaatcatatctcatttg 30588410  T
Q  253 agcttaccacacat 266  Q
    | ||||||||||||    
T  30588409 atcttaccacacat 30588396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 276
Target Start/End: Original strand, 34194724 - 34194845
Alignment:
Q  153 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttcta 252  Q
    |||||||||||| |||  ||| ||||||||| |||||| | |||||||||||| | ||||||||  |||||||||  ||||||||| | ||||   ||||    
T  34194724 atgcccaaaccacctaggcctggtttccaccatcttttatgttataggtgttatcccaactctc--tctaatgtttacatttctaatcctatcctgtcta 34194821  T
Q  253 agcttaccacacattcaacacaac 276  Q
       ||||||||||| |||||||||    
T  34194822 gttttaccacacatccaacacaac 34194845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 1275338 - 1275236
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    ||||| || |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||     
T  1275338 tacggatcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacc-ccactctctctctaatggtgtcattc 1275240  T
Q  235 ctaa 238  Q
    ||||    
T  1275239 ctaa 1275236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 11002648 - 11002732
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    ||||||||||||| ||||  |||||||| ||| | ||||||| | |||||| ||||  |||||||  ||||||||||||||||||||    
T  11002648 catgcccaaaccacctaagtctagtttctaccatgttttctactgtaggtgctacccgaactctc--tctaatgttgtcatttctaa 11002732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 3775178 - 3775232
Alignment:
Q  35 ttttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 89  Q
    ||||||||||||||| ||| ||| ||||||||||| ||| |||| ||||||||||    
T  3775178 ttttcttaatagtttatcttatagtttttctaggtcttcttctgcctctagtgat 3775232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 5305811 - 5305753
Alignment:
Q  34 attttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 92  Q
    |||||| | ||||||||||  ||| ||||||||||| |||||||| |||||||||||||    
T  5305811 attttcatgatagtttctcatatagtttttctaggtcttcctctgcctctagtgatctg 5305753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 34273097 - 34273019
Alignment:
Q  139 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 217  Q
    |||| |||| || ||||||||||||| |||| |||| |||| |||  ||||||||||||||||| |||| | |||||||    
T  34273097 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctattataggtgctacccccactctct 34273019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 272
Target Start/End: Original strand, 4026527 - 4026679
Alignment:
Q  119 tccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctcta 218  Q
    ||||| ||||| ||| ||| ||||  ||| || |||| |||||||| ||||  |||||||||||| |||||| || | || |||||||| |||||||||     
T  4026527 tccttactacagaatctacaggtctcctctctacatgtccaaaccacctaagactagtttccaccatcttttttactttacgtgttaccccaactctctc 4026626  T
Q  219 tctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaaca 272  Q
    | | ||||| || ||| ||| | |||||| ||||  |||||||||||| |||||    
T  4026627 t-tcatgttctcgtttttaatcttatctcatctagtcttaccacacatacaaca 4026679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 9917562 - 9917615
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 89  Q
    ||||| |||||||||||| ||| |||||||||||  |||||||||||| |||||    
T  9917562 tttctaaatagtttctctaatagtttttctaggtcatcctctgtctcttgtgat 9917615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 12576972 - 12577025
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 89  Q
    |||||||||||||| |||  || ||||||||||| |||||||| ||||||||||    
T  12576972 tttcttaatagtttatcttgtagtttttctaggtcttcctctgcctctagtgat 12577025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 276
Target Start/End: Complemental strand, 21952512 - 21952284
Alignment:
Q  51 tctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgggtcatctcact 150  Q
    ||||||| ||||||||||| |||| ||  |||||||||| ||   ||| | ||||||||||| ||| |||||| ||| | |||  || || | |||| ||    
T  21952512 tctcatagtttttctaggtcttcccctacctctagtgatttg---actcccctccatctgatctattctccttactatagaatccacaggacttctctct 21952416  T
Q  151 gcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgt----tacctcaactctctatct--aatgttgtcatttctaaccgtat 244  Q
     |||| |||||||| || |  ||||||||  || ||||||||| |||||||||    |||| |||| |||| |||  |||| |||||||||||| | |||    
T  21952415 acatgtccaaaccacctgagtctagtttctgccatcttttctactataggtgtgtgttaccccaaccctctctctttaatgctgtcatttctaatcttat 21952316  T
Q  245 ctcttctaagcttaccacacattcaacacaac 276  Q
    ||| ||||  |||||||||||| |||| ||||    
T  21952315 ctcgtctagtcttaccacacatgcaacgcaac 21952284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 6788237 - 6788181
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 92  Q
    |||| |||||||| || | ||| ||||||||||| |||||||| |||||||||||||    
T  6788237 tttcctaatagttcctttgatagtttttctaggtcttcctctgcctctagtgatctg 6788181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 12492592 - 12492698
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctatta---taggtgttacctcaactctctatctaatgttgtca 231  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| ||   |||||| |||| | ||||||| ||||||| |||||    
T  12492592 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactatagtaggtgctacccccactctctctctaatggtgtca 12492691  T
Q  232 tttctaa 238  Q
    || ||||    
T  12492692 ttcctaa 12492698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 276
Target Start/End: Complemental strand, 33006664 - 33006595
Alignment:
Q  205 acctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 276  Q
    |||||||||||||  ||||||||||||||| |||   |||||| ||||| ||||  ||||||||||||||||    
T  33006664 acctcaactctct--ctaatgttgtcatttttaattttatctcgtctaatcttagaacacattcaacacaac 33006595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 36 - 267
Target Start/End: Original strand, 39600793 - 39601021
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    |||||||||||||||||| ||| ||||||||||| |||||||  |||| |  |||||   ||||  ||| ||||||| ||  ||||| |||||| ||| |    
T  39600793 tttcttaatagtttctcttatagtttttctaggtcttcctctacctcttgcaatctg---actatcctcgatctgatctactctcctcgctacagaatct 39600889  T
Q  136 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 235  Q
    || |||| ||||  | |||||| |||||| |||| | |  |||||||| ||||||||| |||||||  |||| ||||||||| |||||||||||||||||    
T  39600890 acaggtcttctctttacatgccaaaaccacctaagcttgttttccaccatcttttctactataggtactaccccaactctctctctaatgttgtcatttc 39600989  T
Q  236 taaccgtatctcttctaagcttaccacacatt 267  Q
    ||| | |||| | ||||  |||||||||||||    
T  39600990 taatcttatcccatctagtcttaccacacatt 39601021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 102 - 276
Target Start/End: Complemental strand, 19737104 - 19736929
Alignment:
Q  102 ctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggt 201  Q
    ||||||||||| ||  || ||| |||||| || ||| |||| |||| |||||||| ||||||| ||||||||| |||| ||| ||||||||| |||||||    
T  19737104 ctccatctgatctactcttcttactacaacatctacaggtcttctctctgcatgctcaaaccacctaaacctattttctaccatcttttctactataggt 19737005  T
Q  202 g-ttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 276  Q
    | |  || ||||||||| ||||||| | ||| |||||| |||||| | ||||  |||||||| ||| |||||||||    
T  19737004 gctgcccccaactctctctctaatgatttcacttctaatcgtatcccgtctagtcttaccactcatccaacacaac 19736929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 102 - 276
Target Start/End: Complemental strand, 19758007 - 19757832
Alignment:
Q  102 ctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggt 201  Q
    ||||||||||| ||  || ||| |||||| || ||| |||| |||| |||||||| ||||||| ||||||||| |||| ||| ||||||||| |||||||    
T  19758007 ctccatctgatctactcttcttactacaacatctacaggtcttctctctgcatgctcaaaccacctaaacctattttctaccatcttttctactataggt 19757908  T
Q  202 g-ttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 276  Q
    | |  || ||||||||| ||||||| | ||| |||||| |||||||| | ||  |||||||| ||| |||||||||    
T  19757907 gctgcccccaactctctctctaatgatttcacttctaatcgtatctcgtgtagtcttaccactcatccaacacaac 19757832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 118 - 276
Target Start/End: Original strand, 36820152 - 36820308
Alignment:
Q  118 ctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 217  Q
    |||||| ||||| ||| || ||||| ||||  | |||| | |||||| |||| ||||||||||||| ||||| ||| |||||||| |||| ||||||||     
T  36820152 ctccttactacataatctatgggtcttctctttacatgtctaaaccacctaagcctagtttccaccatctttgctaatataggtgctaccccaactctc- 36820250  T
Q  218 atctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 276  Q
     |||||||| ||||||||||| | |||||| ||||  |||||||||||| |||| ||||    
T  36820251 -tctaatgtcgtcatttctaatcctatctcgtctagtcttaccacacatccaacgcaac 36820308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 139 - 262
Target Start/End: Original strand, 49503766 - 49503889
Alignment:
Q  139 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||| |||| || ||||||||||||| |||| |||| |||| ||| ||||||||| |||||||| ||||| |||||||| ||||||| ||||||| | ||    
T  49503766 ggtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctacctgaactctctctctaatggtgtcattcccaa 49503865  T
Q  239 ccgtatctcttctaagcttaccac 262  Q
     | |||||| ||||  ||||||||    
T  49503866 tcctatctcgtctagtcttaccac 49503889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 47233804 - 47233907
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| || |||| |||||||| |||| |||| |||| |||  |||||||| |||||||| |||||| | ||||| ||||||| ||||||||    
T  47233804 tacgggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacctccattctctctctaatggtgtcattt 47233903  T
Q  235 ctaa 238  Q
    ||||    
T  47233904 ctaa 47233907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 202
Target Start/End: Original strand, 42510128 - 42510289
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    |||| |||| |||||||| ||| ||||||||||| ||||| || |||||||||||||   ||||  ||||||||||| ||  |||||| | ||||||| |    
T  42510128 tttcctaatggtttctctgatagtttttctaggtcttcctttgcctctagtgatctg---actatcctccatctgatctactctccttaccacaaaatct 42510224  T
Q  136 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtg 202  Q
    |  |||| |||  || |||| |||||||| |||| |||| |||||||  ||||||||| ||||||||    
T  42510225 ataggtcttct--ctacatgtccaaaccacctaagcctattttccactatcttttctactataggtg 42510289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 54128435 - 54128354
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatt 233  Q
    ||||||||||||| |||| |||| |||| ||| ||||||||| |||||||| |||| |||| |||| ||||||| |||||||    
T  54128435 catgcccaaaccacctaagcctattttctaccatcttttctactataggtgctaccccaacactctctctaatggtgtcatt 54128354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 247
Target Start/End: Complemental strand, 29600957 - 29600861
Alignment:
Q  152 catgcccaaaccaactaaa-cctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctc 247  Q
    ||||||||||||| ||||| |||| |||| ||| |||||| || |||| | |||||  ||||||||| |||||||||||||||||||| | ||||||    
T  29600957 catgcccaaaccatctaaaacctattttctaccatcttttttactataagcgttacgacaactctctctctaatgttgtcatttctaatcatatctc 29600861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 193
Target Start/End: Complemental strand, 21200718 - 21200564
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    ||||| |||||||| ||| ||| ||||||||||| |||||||  | |||||||| ||   ||||| |||||| |||| ||  |||||| || || ||| |    
T  21200718 tttctaaatagtttgtctaatagtttttctaggtcttcctctccccctagtgatttg---actactctccatgtgatctactctccttactgcagaatct 21200622  T
Q  136 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttcta 193  Q
    ||  ||| |||| || ||||||||||||| ||||  |||||||||||| |||||||||    
T  21200621 acatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttcta 21200564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 33755453 - 33755508
Alignment:
Q  35 ttttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatc 90  Q
    ||||| ||||||||||||| ||| ||||||||||| |||||||| |||||||||||    
T  33755453 ttttcctaatagtttctcttatagtttttctaggttttcctctgcctctagtgatc 33755508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 52138870 - 52138771
Alignment:
Q  139 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| ||||||| ||||    
T  52138870 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattcctaa 52138771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 3987100 - 3987018
Alignment:
Q  156 cccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    ||||||||| ||||  |||||||| ||| ||||||||| |||||||| |||| ||||||||| || ||| | |||||||||||    
T  3987100 cccaaaccacctaagtctagtttctaccatcttttctactataggtgataccccaactctctctccaatatcgtcatttctaa 3987018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 26388538 - 26388452
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||||||||| || ||||||||| |||| ||| ||||||||||||||||||  | ||||||||| | ||||||| | | ||||||||    
T  26388538 catgcccaaatcacctaaacctattttctaccatcttttctattataggtgccatctcaactctatgtctaatggtttaatttctaa 26388452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 50249421 - 50249355
Alignment:
Q  172 ctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||||||||||| ||||||||| |||| | | |||| ||||||||| ||||||||| ||||||||||    
T  50249421 ctagtttccaccatcttttctactatacgcgctaccccaactctctctctaatgttatcatttctaa 50249355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 31261054 - 31261107
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 89  Q
    |||||| ||||||||||| ||| ||||||||||| |||||||| ||||||||||    
T  31261054 tttcttgatagtttctcttatagtttttctaggtcttcctctgcctctagtgat 31261107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 40982066 - 40982013
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 89  Q
    ||||||||||||| |||| ||| ||||||||||| ||||| |||||||||||||    
T  40982066 tttcttaatagttactcttatagtttttctaggtcttcctttgtctctagtgat 40982013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 50960845 - 50960922
Alignment:
Q  139 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctc 216  Q
    |||| |||| || ||||||||||||| |||| |||| |||| ||| ||||||||| |||||||| |||| ||||||||    
T  50960845 ggtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctaccccaactctc 50960922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 26490372 - 26490309
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactct 215  Q
    |||| |||||||| |||| |||| |||| ||| ||||||||| |||||||| ||||||||||||    
T  26490372 catgtccaaaccacctaagcctattttctaccatcttttctactataggtgctacctcaactct 26490309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 28245511 - 28245408
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||  |||| || ||||||||||||| ||||  ||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||     
T  28245511 tacgggttttctctctacatgcccaaaccatctaagtctattttctaccaacttttctactataggtgctacccccactctctctctaatgatgtcattc 28245412  T
Q  235 ctaa 238  Q
    ||||    
T  28245411 ctaa 28245408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 40116585 - 40116636
Alignment:
Q  41 taatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 92  Q
    ||||||||||||| ||| ||||||||||| ||||| || |||||||||||||    
T  40116585 taatagtttctcttatagtttttctaggtcttcctttggctctagtgatctg 40116636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 31454471 - 31454536
Alignment:
Q  172 ctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||||||| ||| ||||||||| |||||||| || | |||| |||| ||||||||||||||||||||    
T  31454471 ctagtttctaccatcttttctactataggtgctaac-caacactctctctaatgttgtcatttctaa 31454536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 45289203 - 45289383
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    |||| ||||||||||||| ||| ||||  ||| | ||||||| ||||| || ||||   |||||  ||||||||||| ||  || ||| ||||||||| |    
T  45289203 tttcctaatagtttctcttatagttttcatagatcttcctctatctcttgtaatct---aactatcctccatctgatctactcttcttactacaaaatct 45289299  T
Q  136 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctatt--ataggtgttacctcaactctct 217  Q
    ||  ||  |||| || | ||||||||||| |||| |||| |||||||| ||||||||| |  ||||||| |||| |||||||||    
T  45289300 acaagtgttctctctacgtgcccaaaccacctaagcctattttccaccatcttttctactgaataggtgctaccccaactctct 45289383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 46367499 - 46367547
Alignment:
Q  35 ttttcttaatagtttctctcataatttttctaggtgttcctctgtctct 83  Q
    |||| |||||||||||||| ||||||||| ||||| |||| ||||||||    
T  46367499 tttttttaatagtttctcttataatttttttaggtcttccactgtctct 46367547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 54365087 - 54365143
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 92  Q
    |||| ||||||||||||| ||| ||||||||||| |||||||| |||| ||| ||||    
T  54365087 tttcctaatagtttctcttatagtttttctaggtcttcctctgcctctcgtggtctg 54365143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 269
Target Start/End: Complemental strand, 55244351 - 55244242
Alignment:
Q  156 cccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagc 255  Q
    ||||| ||| |||| ||| ||||||||| ||||||||| |||||||||| |  ||||||||||    ||||||||||| |||| | |||| | || |  |    
T  55244351 cccaagccacctaagccttgtttccaccatcttttctactataggtgttgcaccaactctcta----atgttgtcattactaatcttatcccgtcaagtc 55244256  T
Q  256 ttaccacacattca 269  Q
    ||||||||||||||    
T  55244255 ttaccacacattca 55244242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 276
Target Start/End: Original strand, 9556481 - 9556717
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    |||||||||||||| ||| ||| |||||| |||| ||||| || |||||||  | ||   ||||  ||||||||||| ||   | ||| ||||| ||| |    
T  9556481 tttcttaatagtttatcttatagtttttcaaggtcttcctttgcctctagtagtttg---actatcctccatctgatatacttttcttactacagaatct 9556577  T
Q  136 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 235  Q
    ||  ||| |||| || |||||| |||||| |||| |||| |||||||| | ||||||| |||| |||||||| ||||| ||| |||||||||||||||||    
T  9556578 acttgtcttctctctacatgcctaaaccacctaagcctattttccaccat-ttttctactataagtgttaccccaactttctctctaatgttgtcatttc 9556676  T
Q  236 taaccgtatctcttctaagcttaccacacattcaacacaac 276  Q
    ||| | |||| | ||||| |||||||||||| |||||||||    
T  9556677 taatcatatcccgtctaatcttaccacacatccaacacaac 9556717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 36 - 238
Target Start/End: Complemental strand, 38435122 - 38434922
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    ||||||||||||||||||  || ||||||||||| | |||||| |||||||||||||   ||||  |||||| |||| ||  |||||| ||| |  || |    
T  38435122 tttcttaatagtttctcttgtagtttttctaggtctacctctgcctctagtgatctg---actatcctccatatgatctactctccttactaaagcatct 38435026  T
Q  136 acgggtcatctcactgcatgcccaaaccaactaaac-ctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    ||  ||| ||||  | ||||||||||||| | |||  |||||||||||| ||||||||| |||||||| |||| ||| ||||| ||||||||||||||||    
T  38435025 acaagtcttctctttacatgcccaaaccacccaaagtctagtttccaccatcttttctactataggtgctaccccaattctctctctaatgttgtcattt 38434926  T
Q  235 ctaa 238  Q
    ||||    
T  38434925 ctaa 38434922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 36 - 238
Target Start/End: Original strand, 37481729 - 37481928
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    |||||||||||||||||| ||| ||||||| ||| ||| |||  ||| ||||||||   |||| | ||||||||||| ||  |||||  |||||||||      
T  37481729 tttcttaatagtttctctaatagtttttcttggtcttcatctacctccagtgatct---aactcccctccatctgatctactctcctaactacaaaattc 37481825  T
Q  136 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 235  Q
    ||  ||| |||| || ||||| ||||||| |||| ||||| ||| ||| |||||| || ||||||   |||| ||||||||| |||||||||||||||||    
T  37481826 acaagtcttctctctacatgctcaaaccacctaagcctaggttcaaccatcttttttactataggaactaccccaactctctctctaatgttgtcatttc 37481925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 235
Target Start/End: Complemental strand, 11412777 - 11412695
Alignment:
Q  153 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 235  Q
    |||||||||| | |||| |||| |||||||| | ||||||| |||||||| |||| ||||||||| |||||||||||||||||    
T  11412777 atgcccaaacaacctaagcctattttccaccatattttctactataggtgctaccccaactctctctctaatgttgtcatttc 11412695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 36 - 238
Target Start/End: Original strand, 43752059 - 43752258
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    |||| ||||||||||||| ||| ||||||||||| ||||| || ||| |||||||||   | ||  ||||||||||| ||  |||| | ||||| ||| |    
T  43752059 tttcctaatagtttctctgatagtttttctaggtcttcctatgcctccagtgatctg---agtatcctccatctgatctactctccctactacataatct 43752155  T
Q  136 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 235  Q
    |  |||| |||| || |||| ||||| || |||| |||| |||| |||  |||||||| |||||||| |||| ||||||||| |||||| | |||| |||    
T  43752156 ataggtcttctctctacatgtccaaatcacctaagcctattttctaccaccttttctactataggtgctaccccaactctctctctaatatggtcagttc 43752255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 213
Target Start/End: Complemental strand, 18959074 - 18958903
Alignment:
Q  43 atagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgggtc 142  Q
    |||||||||||  || ||||||||||| |||||||| ||||  |||||||   ||||  ||||||||||| ||  |||||| ||||||||  | | ||||    
T  18959074 atagtttctcttgtagtttttctaggtcttcctctgcctctgatgatctg---actatcctccatctgatctactctccttactacaaaagctgcaggtc 18958978  T
Q  143 atctcactgcatgc----ccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaact 213  Q
     |||| ||||||||    |||||||| |||| |||| |||||||| ||||||||| |||||||| |||| |||||    
T  18958977 ttctctctgcatgcccaaccaaaccacctaagcctattttccaccatcttttctactataggtgctaccccaact 18958903  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 13240970 - 13241056
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    ||||||||||||| |||| ||||||||||||| |||||||||  |||  || |||  ||| ||||| ||||||||||||||||||||    
T  13240970 catgcccaaaccacctaagcctagtttccaccatcttttctaacatacttgctactccaattctctctctaatgttgtcatttctaa 13241056  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 33504393 - 33504320
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgat 112  Q
    |||||||||||||||||| ||| ||||||||||| || ||||| |||||||||||||   ||||| |||||||||||    
T  33504393 tttcttaatagtttctcttatagtttttctaggtttttctctgcctctagtgatctg---actaccctccatctgat 33504320  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 186 - 276
Target Start/End: Complemental strand, 36039246 - 36039156
Alignment:
Q  186 cttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 276  Q
    ||||||||||||| ||||||| |||||||| | |||||||||||||||| |||   || ||| ||||| ||| |||||||| |||||||||    
T  36039246 cttttctattatatgtgttacgtcaactctttctctaatgttgtcatttataattttaactcatctaaacttgccacacatccaacacaac 36039156  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 11017398 - 11017306
Alignment:
Q  125 ctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 217  Q
    ||||||||| |||||||| |||| |  ||| |||||||||  ||| || |||||||||  ||||||||| |||||||| ||||||||||||||    
T  11017398 ctacaaaatctacgggtcttctctccacatacccaaaccacttaagccgagtttccacgatcttttctactataggtgctacctcaactctct 11017306  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 133
Target Start/End: Original strand, 26784452 - 26784546
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaat 133  Q
    |||||||||||||||||| ||| ||||||||||| || ||||| |||||||||| ||   ||||| |||||||| || ||  |||||| |||||||||    
T  26784452 tttcttaatagtttctcttatagtttttctaggtctttctctgcctctagtgatttg---actaccctccatcttatctaccctccttactacaaaat 26784546  T

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Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 41763254 - 41763352
Alignment:
Q  139 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||| |||| ||||||| |||||||| |||| |||| |||| |||  |||||||| ||||||||||||| | ||||||| ||||||| ||||||| ||||    
T  41763254 ggtcttctctctgcatgtccaaaccacctaagcctattttctaccaacttttctactataggtgttacc-ccactctctctctaatggtgtcattcctaa 41763352  T

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Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 19024237 - 19024151
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||| |||||||| |||| | || |||||||| ||||||| | |||||||| ||||  ||| |||| ||||||||||||||||||||    
T  19024237 catgtccaaaccacctaagcttactttccaccatcttttcaaatataggtgctacccaaaccctctctctaatgttgtcatttctaa 19024151  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 276
Target Start/End: Complemental strand, 8180850 - 8180713
Alignment:
Q  139 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||| |||| || ||||||||||||| |||| | || |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| ||||||| ||||    
T  8180850 ggtcttctctctacatgcccaaaccatctaagcttattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattcctaa 8180751  T
Q  239 ccgtatctcttctaagcttaccacacattcaacacaac 276  Q
     | ||||   ||||  |||||||| ||| |||||||||    
T  8180750 tcctatcatgtctagtcttaccactcatccaacacaac 8180713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 19235096 - 19235149
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 89  Q
    ||||| |||||||||||| ||| ||||||||||| ||||||| |||||||||||    
T  19235096 tttctcaatagtttctcttatagtttttctaggtcttcctctatctctagtgat 19235149  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 237
Target Start/End: Complemental strand, 7615340 - 7615271
Alignment:
Q  166 ctaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttcta 237  Q
    |||| |||||||| |||| ||||||||| ||||||||||||| ||| ||||  |||||||| ||||||||||    
T  7615340 ctaaccctagtttgcaccatcttttctactataggtgttaccccaagtctc--tctaatgtggtcatttcta 7615271  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 24583840 - 24583908
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgt 203  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  ||||||||||||||||||    
T  24583840 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctattataggtgt 24583908  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 40759157 - 40759070
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaac-tctctatctaatgttgtcatttctaa 238  Q
    ||||| ||||||| ||||  |||||||||||| | ||||||| |||| ||| || | |||| ||||| ||||||||||||||||||||    
T  40759157 catgcacaaaccacctaactctagtttccaccattttttctactataagtgctaacccaacctctctctctaatgttgtcatttctaa 40759070  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 14197387 - 14197437
Alignment:
Q  152 catgcccaaaccaactaaa-cctagtttccaccgtcttttctattataggt 201  Q
    ||||||||||||| ||||| ||||||||||||| ||||||||| |||||||    
T  14197387 catgcccaaaccacctaaagcctagtttccaccatcttttctactataggt 14197437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 276
Target Start/End: Complemental strand, 21834567 - 21834486
Alignment:
Q  195 tataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 276  Q
    |||||||| |||||||||| ||| |  |||||||| |||||||| | |||||| ||||  |||||||||||| |||| ||||    
T  21834567 tataggtgctacctcaactatctttacaatgttgtaatttctaatcttatctcatctagtcttaccacacatccaactcaac 21834486  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 23714506 - 23714607
Alignment:
Q  172 ctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaac 271  Q
    |||||||||||| ||||||||| |||| ||| |||| |||  ||||||||||||| ||||||| ||| | ||| |  ||||  |||||||||||| ||||    
T  23714506 ctagtttccaccatcttttctactatatgtgctacc-caa--ctctatctaatgtcgtcatttttaatcctattttgtctagtcttaccacacatccaac 23714602  T
Q  272 acaac 276  Q
    |||||    
T  23714603 acaac 23714607  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 24102178 - 24102279
Alignment:
Q  172 ctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaac 271  Q
    |||||||||||| ||||||||| |||| ||| |||| |||  ||||||||||||| ||||||| ||| | ||| |  ||||  |||||||||||| ||||    
T  24102178 ctagtttccaccatcttttctactatatgtgctacc-caa--ctctatctaatgtcgtcatttttaatcctattttgtctagtcttaccacacatccaac 24102274  T
Q  272 acaac 276  Q
    |||||    
T  24102275 acaac 24102279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 33287591 - 33287550
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctct 77  Q
    |||||||||||||||||| ||| ||||||||||| |||||||    
T  33287591 tttcttaatagtttctcttatagtttttctaggtcttcctct 33287550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 12141599 - 12141539
Alignment:
Q  154 tgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactc 214  Q
    ||||||||||| |||| |||  |||||||| ||||||||| |||||||| |||| ||||||    
T  12141599 tgcccaaaccacctaagcctcttttccaccatcttttctactataggtgctaccccaactc 12141539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 37452338 - 37452394
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 92  Q
    ||||||||||| | |||| ||||||||||||||| |||||||  |||| ||||||||    
T  37452338 tttcttaatagctcctcttataatttttctaggtcttcctcttcctcttgtgatctg 37452394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 207
Target Start/End: Original strand, 44437834 - 44438001
Alignment:
Q  37 ttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgta 136  Q
    ||||||||||||||||  ||| ||||||||||| | || ||  |||||||||||||   ||| | |||||||| || ||| ||||||  |||| |||  |    
T  44437834 ttcttaatagtttctcatatagtttttctaggtctacccctacctctagtgatctg---actcccctccatctcatctatactccttattacagaatcca 44437930  T
Q  137 cgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacc 207  Q
    |  ||| |||| || |||||| |||||| |||   |||||||| ||| ||||||||| |||||| ||||||    
T  44437931 caagtcttctctctacatgccgaaaccacctatgtctagtttctaccatcttttctactataggggttacc 44438001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 45437000 - 45436956
Alignment:
Q  48 ttctctcataatttttctaggtgttcctctgtctctagtgatctg 92  Q
    |||||| ||||||||| ||||| |||||||| |||||||||||||    
T  45437000 ttctcttataatttttataggtcttcctctgcctctagtgatctg 45436956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 37 - 276
Target Start/End: Complemental strand, 32043759 - 32043523
Alignment:
Q  37 ttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgta 136  Q
    ||||| ||||||||||| ||| ||||| ||||| |||| ||  |||||||||| || || |    ||||||||||| ||| |||||| |||||| ||  |    
T  32043759 ttcttgatagtttctctaatagtttttttaggtcttcccctacctctagtgatttgacaccc---ctccatctgatctattctccttactacaacatcca 32043663  T
Q  137 cgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttct 236  Q
    | |||| |||| || |||| |||||||| | ||  |||||||| ||| |||||| || |||||||| |||| ||||||||| ||||||||||||||||||    
T  32043662 caggtcttctctctacatggccaaaccaccaaagtctagtttctaccatcttttgtactataggtgataccccaactctctctctaatgttgtcatttct 32043563  T
Q  237 aaccgtatctcttctaagcttaccacacattcaacacaac 276  Q
    ||   |||| | ||||  |||||||||||| |||| ||||    
T  32043562 aattctatcccgtctagtcttaccacacatccaacgcaac 32043523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 5908812 - 5908613
Alignment:
Q  40 ttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgg 139  Q
    |||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||   || |  ||||| ||||| ||  |||||| ||||||||| ||| |    
T  5908812 ttaatagtttctcttatagtttttctaggtcttcctatgtctctagtgatctg---accatcctccacctgatctactctccttactacaaaatctacag 5908716  T
Q  140 gtcatctcactgcatgcccaaaccaactaaacctagtttcc------accgtcttttctattataggtgttacctcaactctctatctaatgttgtcatt 233  Q
    ||| |||| ||  ||  |||||||||||||  |||||||||      ||| ||||||||| |||||||  |||| ||||||||| |||||||||||||||    
T  5908715 gtcttctctct--atatccaaaccaactaagtctagtttccatttcaaccatcttttctactataggttctaccccaactctctctctaatgttgtcatt 5908618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 176 - 266
Target Start/End: Original strand, 44681288 - 44681378
Alignment:
Q  176 tttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacat 266  Q
    |||||||| |||||||||||||||||| |||| ||||| ||| |||||||||||||||||||| | |||||| ||||  ||||||||||||    
T  44681288 tttccaccatcttttctattataggtgctaccacaactgtctctctaatgttgtcatttctaatcttatctcgtctagtcttaccacacat 44681378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 10080019 - 10080239
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    |||||||| ||||| ||| ||| ||| ||||||| |||||||  |||||||||| ||   ||| | || ||| |||| ||  |||||| |||||||||      
T  10080019 tttcttaacagtttttcttatagtttctctaggtcttcctctacctctagtgatttg---actccccttcatttgatctactctccttactacaaaatcc 10080115  T
Q  136 acgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttc 235  Q
     | |||| |||| || ||||||||||||| | |  ||||||||||||| ||||||||| | ||| || |||||||||||||| |||||||||||||||||    
T  10080116 tcaggtcttctctctacatgcccaaaccatc-aggcctagtttccaccatcttttctact-tagatgctacctcaactctctctctaatgttgtcatttc 10080213  T
Q  236 taaccgtatctcttctaagcttacca 261  Q
    ||| | |||||| ||||  |||||||    
T  10080214 taatcttatctcgtctagtcttacca 10080239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 9695688 - 9695602
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    ||||||||||||| |||| || |||||||||| ||||||||| |||||||| |||| ||| | ||| | ||||||||||||||||||    
T  9695688 catgcccaaaccacctaagccgagtttccaccatcttttctactataggtgctaccccaaatatctctataatgttgtcatttctaa 9695602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 13171875 - 13171960
Alignment:
Q  153 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||||||||||| |||| | || |||||||| ||||||||| |||||||| | || ||||||||| |||||| |||||||||||||    
T  13171875 atgcccaaaccacctaagcatattttccaccatcttttctactataggtgcttccccaactctctctctaatcttgtcatttctaa 13171960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 11733784 - 11733718
Alignment:
Q  172 ctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||||||||||| ||| |||||| |||||||||| | ||||||| | ||||||||||||||||||||    
T  11733784 ctagtttccaccatctattctatcataggtgttatcccaactctttctctaatgttgtcatttctaa 11733718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 157 - 234
Target Start/End: Original strand, 42493536 - 42493611
Alignment:
Q  157 ccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| ||||||||||||  ||||||||| ||||||||||||| ||||||||  || |||||||||||||    
T  42493536 ccaaaccacctaagcctagtttccacaatcttttctactataggtgttaccccaactctc--tccaatgttgtcattt 42493611  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 4011253 - 4011204
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctag 85  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||||||    
T  4011253 tttcttaatagtttctcttatagtttttctaggtcttcctctgtctctag 4011204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 41444551 - 41444612
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaact 213  Q
    |||| |||||||| |||||||||||||||||| ||||||||| |||||||| |||| |||||    
T  41444551 catgtccaaaccacctaaacctagtttccaccatcttttctactataggtgctaccccaact 41444612  T

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Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 266
Target Start/End: Original strand, 2518623 - 2518730
Alignment:
Q  158 caaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagctt 257  Q
    ||||||| ||||||||| |||||||| ||||||||| |  ||||| |||| ||| | ||| |||||| ||||||||||||| | |||||| ||||  |||    
T  2518623 caaaccacctaaacctattttccaccatcttttctacttgaggtgctaccccaattttctctctaat-ttgtcatttctaatcctatctcatctagtctt 2518721  T
Q  258 accacacat 266  Q
    |||||||||    
T  2518722 accacacat 2518730  T

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Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 276
Target Start/End: Complemental strand, 16252937 - 16252868
Alignment:
Q  205 acctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 276  Q
    |||||||||||||  |||||||||||||||||||   |||||| ||||| |||||||||||| |||||||||    
T  16252937 acctcaactctct--ctaatgttgtcatttctaattttatctcatctaatcttaccacacatccaacacaac 16252868  T

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Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 30113423 - 30113503
Alignment:
Q  153 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatt 233  Q
    ||||||||||||| |||||||| |||| ||| ||||||||| |||| |||||||| | ||||||| ||||||  |||||||    
T  30113423 atgcccaaaccaattaaacctattttctaccatcttttctactatatgtgttaccccgactctctctctaataatgtcatt 30113503  T

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Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 276
Target Start/End: Complemental strand, 36545223 - 36545080
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaa--ctctctatctaatgttgtcat 232  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| ||||||||||||| | |  |||||| ||||||| ||||||    
T  36545223 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgttacccccactctctctctctaatggtgtcat 36545124  T
Q  233 ttctaaccgtatctcttctaagcttaccacacattcaacacaac 276  Q
    | |||| | ||||   ||||  |||||||| ||| |||||||||    
T  36545123 tcctaatcctatcatgtctagtcttaccactcatccaacacaac 36545080  T

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Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 36565449 - 36565552
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||  |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||     
T  36565449 tacgggtattctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattc 36565548  T
Q  235 ctaa 238  Q
    ||||    
T  36565549 ctaa 36565552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 164
Target Start/End: Original strand, 35914713 - 35914838
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgt 135  Q
    |||| ||||||||||||| ||| |||||||| || ||||||||||||||| ||||||   ||||  ||||||||||  ||  |||||||||| ||||| |    
T  35914713 tttcctaatagtttctcttatagtttttctatgtcttcctctgtctctagggatctg---actatcctccatctgacctactctccttgctataaaatct 35914809  T
Q  136 acgggtcatctcactgcatgcccaaacca 164  Q
    |  |||| |||| || | |||||||||||    
T  35914810 ataggtcttctctctacgtgcccaaacca 35914838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 39051195 - 39051113
Alignment:
Q  156 cccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    ||||||||| ||||||| ||||||  || ||||||| || |||||||||| | ||||||||| || ||| |||||||||||||    
T  39051195 cccaaaccacctaaaccgagtttctgccatcttttcaatgataggtgttatcccaactctctctcgaatattgtcatttctaa 39051113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 16705918 - 16705861
Alignment:
Q  35 ttttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 92  Q
    ||||||||||||||||||| | ||| ||| ||||| ||||| ||||||||||||||||    
T  16705918 ttttcttaatagtttctcttacaatatttttaggtcttcctttgtctctagtgatctg 16705861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 195 - 276
Target Start/End: Original strand, 28300380 - 28300461
Alignment:
Q  195 tataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaacacaac 276  Q
    |||||||||||| |||||| ||| |  ||||||||||||||||| | |||||| ||||  ||||| |||||| |||||||||    
T  28300380 tataggtgttacgtcaactatctctacaatgttgtcatttctaatcttatctcatctagtcttactacacatccaacacaac 28300461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 35602050 - 35601992
Alignment:
Q  178 tccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||||| |||||| |||||||||||||||||||  ||||| |||||| |||||||||||||    
T  35602050 tccaccatcttttttattataggtgttacctca--tctctctctaatattgtcatttctaa 35601992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 45512607 - 45512660
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 89  Q
    |||| ||||||||||||| ||| ||||||||||| |||||||| ||||||||||    
T  45512607 tttcctaatagtttctcttatagtttttctaggtcttcctctgcctctagtgat 45512660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 5127382 - 5127442
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaa 96  Q
    |||||||||||||||||| ||| ||||||||||  | |||||| |||||||||||| ||||    
T  5127382 tttcttaatagtttctcttatagtttttctaggcctacctctgcctctagtgatctagcaa 5127442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 35643718 - 35643774
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 92  Q
    |||||||||| ||||||| ||| ||||||||||| |||||||| ||||||| |||||    
T  35643718 tttcttaataatttctcttatagtttttctaggtcttcctctgcctctagtaatctg 35643774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 276
Target Start/End: Complemental strand, 36069676 - 36069576
Alignment:
Q  173 tagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaaccgtatctcttctaagcttaccacacattcaaca 272  Q
    ||||||||||| ||| || ||||||||||  ||| ||||||||||  ||||||||||| ||||||| | |||| | ||||  |||||||||||| |||||    
T  36069676 tagtttccaccatctattttattataggttctac-tcaactctct--ctaatgttgtcgtttctaatcttatcccgtctagtcttaccacacatccaaca 36069580  T
Q  273 caac 276  Q
    ||||    
T  36069579 caac 36069576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 36395161 - 36395261
Alignment:
Q  139 ggtcatctcactgcatgcccaaaccaactaaa-cctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttcta 237  Q
    |||| |||| || ||||||||||||| ||||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| ||||||| |||    
T  36395161 ggtcttctctctacatgcccaaaccatctaaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattccta 36395260  T
Q  238 a 238  Q
    |    
T  36395261 a 36395261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 92
Target Start/End: Complemental strand, 2216457 - 2216402
Alignment:
Q  37 ttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 92  Q
    ||||||||||||||||| ||  ||||||||||| |||||||  |||||||||||||    
T  2216457 ttcttaatagtttctcttatgttttttctaggtcttcctctacctctagtgatctg 2216402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 25985556 - 25985492
Alignment:
Q  172 ctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||||||| ||| ||||||||| |||||||| |||| |||||||||  ||||||||||| |||||||    
T  25985556 ctagtttctaccatcttttctactataggtgctaccccaactctct--ctaatgttgtcgtttctaa 25985492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 2796614 - 2796528
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    ||||||||||||| |||| |||| |||| |||  |||||||| |||||| | |||| | ||||||| ||||||| ||||||| ||||    
T  2796614 catgcccaaaccatctaagcctattttctaccaacttttctactataggcgctacccccactctctctctaatggtgtcattcctaa 2796528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 7046391 - 7046305
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    ||||||||||||| |||| || || ||||||| |||||||||  || |||| ||||    |||||| ||||||||||||||||||||    
T  7046391 catgcccaaaccagctaagccgaggttccaccatcttttctacgattggtgctacccagcctctctctctaatgttgtcatttctaa 7046305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 18474185 - 18474235
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtg 202  Q
    ||||| |||||||||||| ||||||||||||| || |||||| ||||||||    
T  18474185 catgctcaaaccaactaagcctagtttccaccatcatttctactataggtg 18474235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 24399902 - 24399951
Alignment:
Q  37 ttcttaatagtttctctcataatttttctaggtgttcctctgtctctagt 86  Q
    ||||||||||||||||| |||||||||||| || || ||||| |||||||    
T  24399902 ttcttaatagtttctcttataatttttctaagttttgctctgcctctagt 24399951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 29700332 - 29700267
Alignment:
Q  153 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctcta 218  Q
    |||||||||||| |||| || | ||||| || ||||||||| |||||||| |||| ||||||||||    
T  29700332 atgcccaaaccacctaagccaactttcctccatcttttctactataggtgctaccccaactctcta 29700267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 271
Target Start/End: Complemental strand, 30748527 - 30748397
Alignment:
Q  139 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||| |||| || ||||||||||||| |||| ||| | ||||||| ||||||||| ||  ||||  ||| ||||||||  | ||||||||||||||||||    
T  30748527 ggtcttctctctacatgcccaaaccacctaagccttgattccaccatcttttctactactggtgcgaccacaactctc--tgtaatgttgtcatttctaa 30748430  T
Q  239 ccgtatctcttctaagcttaccacacattcaac 271  Q
     | ||||   ||||| || ||||||||| ||||    
T  30748429 tcctatcatgtctaatctaaccacacatccaac 30748397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 32931131 - 32931078
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 89  Q
    |||| ||||||||||||| ||| ||||| ||||| |||||||| ||||||||||    
T  32931131 tttcctaatagtttctctgatagtttttttaggtcttcctctgcctctagtgat 32931078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 40813381 - 40813316
Alignment:
Q  152 catgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctct 217  Q
    ||||||||||||| ||||||||| |||| |||  |||||||| |||||||| |||| | |||||||    
T  40813381 catgcccaaaccatctaaacctattttctaccaacttttctactataggtgctacccccactctct 40813316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 12491346 - 12491418
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacc 207  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| ||||    
T  12491346 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 12491418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 18125247 - 18125146
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| || ||||  ||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | |||||||  |||||| ||||||||    
T  18125247 tacgggtcttctctctacatgttcaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctct--ctaatggtgtcattt 18125150  T
Q  235 ctaa 238  Q
    ||||    
T  18125149 ctaa 18125146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 38178376 - 38178475
Alignment:
Q  40 ttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgg 139  Q
    |||||||||||||| ||| ||||||||||| |||||||  |||||| ||| ||   ||||  ||||||||||| ||  |||||| ||||||||| ||| |    
T  38178376 ttaatagtttctcttatagtttttctaggtcttcctctacctctagcgatttg---actatcctccatctgatctactctccttactacaaaatctacag 38178472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 38392005 - 38392057
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtga 88  Q
    ||||||||| |||||||  ||| ||||||||||| ||||||||||| ||||||    
T  38392005 tttcttaatggtttctcatatagtttttctaggtcttcctctgtctatagtga 38392057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 41444451 - 41444506
Alignment:
Q  35 ttttcttaatagtttctctcataatttt--tctaggtgttcctctgtctctagtga 88  Q
    ||||||||||||||||||| ||| ||||  ||||||| |||||||| |||||||||    
T  41444451 ttttcttaatagtttctcttatagtttttttctaggtcttcctctgcctctagtga 41444506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 31542 - 31439
Alignment:
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcattt 234  Q
    |||||||| |||| || ||||||||||||| |||| |||| |||| |||  |||||||| |||||||| |||| | ||||||| ||||||| |||||||     
T  31542 tacgggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattc 31443  T
Q  235 ctaa 238  Q
    ||||    
T  31442 ctaa 31439  T

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Target: scaffold0018; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 44080 - 44159
Alignment:
Q  139 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctcta 218  Q
    |||| |||| || ||||||||||||| |||| |||| ||||| || ||||||||| |||||||| |||| ||||||||||    
T  44080 ggtcttctctctacatgcccaaaccacctaagcctattttccgccatcttttctactataggtgctaccccaactctcta 44159  T

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Target: scaffold0018; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 178532 - 178585
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgat 89  Q
    |||||||||||||||||| ||| ||||||||||| || ||| | ||||||||||    
T  178532 tttcttaatagtttctcttatagtttttctaggtcttactccgcctctagtgat 178585  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 271
Target Start/End: Complemental strand, 33084128 - 33083996
Alignment:
Q  139 ggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||| |||| || ||| ||||||||| ||||  |||||||| ||| |||||||||  ||||||| |||| ||||||||| |||||| | |||||||||||    
T  33084128 ggtcttctctctacattcccaaaccacctaagtctagtttctaccatcttttctaccataggtgctaccccaactctctctctaatatcgtcatttctaa 33084029  T
Q  239 ccgtatctcttctaagcttaccacacattcaac 271  Q
       |||| | ||||  |||||||||||| ||||    
T  33084028 ttctatcccatctagtcttaccacacatccaac 33083996  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 34617 - 34672
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatct 91  Q
    ||||||||| |||||||| ||| ||||||||||| |||||||| ||||||||||||    
T  34617 tttcttaatggtttctcttatagtttttctaggtcttcctctgcctctagtgatct 34672  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 12134145 - 12134212
Alignment:
Q  171 cctagtttccaccgtcttttctattataggtgttacctcaactctctatctaatgttgtcatttctaa 238  Q
    |||| |||||||| ||||||||| |||||||  |||||||| ||||| |||||| |||||||||||||    
T  12134145 cctattttccaccatcttttctactataggtcgtacctcaattctctctctaatattgtcatttctaa 12134212  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 217
Target Start/End: Original strand, 14389323 - 14389457
Alignment:
Q  79 tctctagtgatctggcaactacgctccatctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagttt 178  Q
    ||||||||||||||   ||||  ||||||||||| ||| |||||| ||||||| | ||  |||| |||| || |||| |||||||| ||||   | ||||    
T  14389323 tctctagtgatctg---actatcctccatctgatctattctccttactacaaagtctataggtcttctctctacatgtccaaaccacctaagttt-gttt 14389418  T
Q  179 ccaccgtcttttctattataggtgttacctcaactctct 217  Q
    ||||| |||||||||  ||||||| ||||||||||||||    
T  14389419 ccaccatcttttctacgataggtgctacctcaactctct 14389457  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 9593820 - 9593861
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctct 77  Q
    |||| ||||||||||||| ||||||||||||||| |||||||    
T  9593820 tttcctaatagtttctcttataatttttctaggtcttcctct 9593861  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 21870299 - 21870364
Alignment:
Q  153 atgcccaaaccaactaaacctagtttccaccgtcttttctattataggtgttacctcaactctcta 218  Q
    |||||||||||| |||| || |||||| ||| ||||||||| || ||||| |||| ||||||||||    
T  21870299 atgcccaaaccacctaagccgagtttctaccatcttttctactacaggtgctaccccaactctcta 21870364  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 201
Target Start/End: Original strand, 6293564 - 6293660
Alignment:
Q  105 catctgatttatgctccttgctacaaaatgtacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggt 201  Q
    |||||||||||  ||||||  |||| ||| ||| |||  |||| || ||||||||||||| || ||||||||||||||| | |||| || |||||||    
T  6293564 catctgatttactctccttattacataatctacaggtgttctctctacatgcccaaaccacctgaacctagtttccaccatattttgtactataggt 6293660  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 7513614 - 7513666
Alignment:
Q  150 tgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggtg 202  Q
    ||||||||||||||| ||||  |||| ||| ||| ||||||||||||||||||    
T  7513614 tgcatgcccaaaccacctaagtctaggttctaccatcttttctattataggtg 7513666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 8364726 - 8364670
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 92  Q
    |||||||||||||||||| ||| ||||| ||||| ||| |||  |||||||||||||    
T  8364726 tttcttaatagtttctcttatagtttttttaggtcttcatcttcctctagtgatctg 8364670  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 201
Target Start/End: Complemental strand, 24665981 - 24665818
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctggcaactacgctccatctgatttatgctccttgctac-aaaatg 134  Q
    ||||||||||||||||||  || || ||||| |  |||||||| |||| ||||||   | |||| ||| |||||||| ||  |||||| |||| |||||     
T  24665981 tttcttaatagtttctcttgtagttattctatgacttcctctgcctctggtgatc---cgactatgcttcatctgatctactctccttactacaaaaatc 24665885  T
Q  135 tacgggtcatctcactgcatgcccaaaccaactaaacctagtttccaccgtcttttctattataggt 201  Q
    ||| |||| |||| || |||| |||||||| |||| |||| |||| ||| | ||||||| |||||||    
T  24665884 tacaggtcttctctctacatgtccaaaccacctaagcctattttctaccatattttctactataggt 24665818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 33997655 - 33997707
Alignment:
Q  35 ttttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtg 87  Q
    ||||||||||||||||||| ||| |||| | |||| |||||||| ||||||||    
T  33997655 ttttcttaatagtttctcttatagttttccaaggtcttcctctgcctctagtg 33997707  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 45556 - 45611
Alignment:
Q  36 tttcttaatagtttctctcataatttttctaggtgttcctctgtctctagtgatctg 92  Q
    |||||||||||||||||| ||| |||| |||||||||| | ||||| ||||||||||    
T  45556 tttcttaatagtttctctgatagtttt-ctaggtgttcttatgtctttagtgatctg 45611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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