View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13826_low_11 (Length: 281)
Name: NF13826_low_11
Description: NF13826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13826_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 266
Target Start/End: Complemental strand, 1516461 - 1516205
Alignment:
| Q |
10 |
atatcaacatcatatccttccactctcaagtagacaacctcgtatgcagttttttgtttcatgcagagctaacaaaaatgttccaattcaacctgagctg |
109 |
Q |
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| T |
1516461 |
atatcaacatcatatccttccactctcaagtagacaacctcgtatgcagttttctgtttcatgcagagctacaaaaaatgttccaattcataatgagttg |
1516362 |
T |
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| Q |
110 |
aatgatgatggcaacttgtacaagatactatgtttgagtcctaaaagtgcaacaatggatgacataaagagagcatatagaacaatggctctccagtatc |
209 |
Q |
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| T |
1516361 |
aatgatgatggcaacttgtacaagatactatgtttgagtcctaaaagtgcaacaatggatgacataaagagagcatatagaacaatggctctccagtatc |
1516262 |
T |
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| Q |
210 |
atcctgatgtttgtcatgatcgtttgaagaaagaggaatcaacgaagatgtttgtac |
266 |
Q |
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| T |
1516261 |
atcctgatgtttgtcatgatcgtttgaagaaagaggaatcaacgaagatgtttgtac |
1516205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 266
Target Start/End: Complemental strand, 1530691 - 1530435
Alignment:
| Q |
10 |
atatcaacatcatatccttccactctcaagtagacaacctcgtatgcagttttttgtttcatgcagagctaacaaaaatgttccaattcaacctgagctg |
109 |
Q |
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| T |
1530691 |
atatcaacatcatatccttccactctcaagtagacaacctcgtatgcagttttctgtttcatgcagagctacaaaaaatgttccaattcataatgagttg |
1530592 |
T |
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| Q |
110 |
aatgatgatggcaacttgtacaagatactatgtttgagtcctaaaagtgcaacaatggatgacataaagagagcatatagaacaatggctctccagtatc |
209 |
Q |
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| T |
1530591 |
aatgatgatggcaacttgtacaagatactatgtttgagtcctaaaagtgcaacaatggatgacataaagagagcatatagaacaatggctctccagtatc |
1530492 |
T |
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| Q |
210 |
atcctgatgtttgtcatgatcgtttgaagaaagaggaatcaacgaagatgtttgtac |
266 |
Q |
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| T |
1530491 |
atcctgatgtttgtcatgatcgtttgaagaaagaggaatcaacgaagatgtttgtac |
1530435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 152 - 252
Target Start/End: Original strand, 37592983 - 37593083
Alignment:
| Q |
152 |
aaaagtgcaacaatggatgacataaagagagcatatagaacaatggctctccagtatcatcctgatgtttgtcatgatcgtttgaagaaagaggaatcaa |
251 |
Q |
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| T |
37592983 |
aaaagtgcaacaatggaagatataaagagagcttatagatcaatggcacttcagtatcatcctgatgtgtgtcatgatccttccatgaaagaggaatcaa |
37593082 |
T |
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| Q |
252 |
c |
252 |
Q |
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| T |
37593083 |
c |
37593083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 7978366 - 7978454
Alignment:
| Q |
142 |
tttgagtcctaaaagtgcaacaatggatgacataaagagagcatatagaacaatggctctccagtatcatcctgatgtttgtcatgatc |
230 |
Q |
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||||||||||| |||| |||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| | |||| ||||| |
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| T |
7978366 |
tttgagtcctagaagttcaacaatgaatgacataaagagagaatatagaacaatggctctttagtatcatcctgatttgtgtcgtgatc |
7978454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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