View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13826_low_12 (Length: 276)
Name: NF13826_low_12
Description: NF13826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13826_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 15970139 - 15970386
Alignment:
| Q |
12 |
catcaccaccatcaacaacatcaacaacgacaccaagtagatacgagaatcaaaagagaagagattggaacacatttggacaatacctaagaaaccatag |
111 |
Q |
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| T |
15970139 |
catcaccaccatcaacaacatcaacaacgacaccaagtagatacgagaatcaaaagagaagagattggaacacatttggacaatacctaagaaaccatag |
15970238 |
T |
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| Q |
112 |
accaccactttcactctcacgttgtagtggagctcatgtccttgaattcttgcgttacctcgaccaatttggaaaaactaaggttcatactcagatttgt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15970239 |
accaccactttcactctcacgttgtagtggagctcatgtccttgaattcttgcgatacctcgaccaatttggaaaaactaaggttcatactctgatttgt |
15970338 |
T |
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| Q |
212 |
cccttttatggacatccaaatccacctgcaccatgtccatgtcctctt |
259 |
Q |
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| T |
15970339 |
cccttttatggacatccaaatccacctgcatcatgtccatgtcctctt |
15970386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 33672318 - 33672116
Alignment:
| Q |
56 |
gagaatcaaaagagaagagattggaacacatttggacaatacctaagaaaccatagaccaccactttcactctcacgttgtagtggagctcatgtccttg |
155 |
Q |
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| T |
33672318 |
gagaatcaaaaaagaagagactggaacacttttggtcaatacctaagaaaccatagaccaccactttcactctcacgttgtagtggagcacatgttcttg |
33672219 |
T |
|
| Q |
156 |
aattcttgcgttacctcgaccaatttggaaaaactaaggttcatactcagatttgtcccttttatggacatccaaatccacctgcaccatgtccatgtcc |
255 |
Q |
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| T |
33672218 |
aatttttaaggtatcttgatcagtttgggaaaactaaggttcattcacagatttgtccattttttggtcatccaaacccacctgcaccttgtccttgtcc |
33672119 |
T |
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| Q |
256 |
tct |
258 |
Q |
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||| |
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| T |
33672118 |
tct |
33672116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 30504064 - 30504015
Alignment:
| Q |
206 |
atttgtcccttttatggacatccaaatccacctgcaccatgtccatgtcc |
255 |
Q |
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| T |
30504064 |
atttgtccattctatggacatccaaaccctccagcaccatgtccatgtcc |
30504015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 199
Target Start/End: Original strand, 37974946 - 37975083
Alignment:
| Q |
62 |
caaaagagaagagattggaacacatttggacaatacctaagaaaccatagaccaccactttcactctcacgttgtagtggagctcatgtccttgaattct |
161 |
Q |
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| T |
37974946 |
caaaagagacgtgattggaacacttttggtcaatacctaaaaaaccatcgtccaccattaacactctcacgttgtagtggtgcacatgttcttgagtttc |
37975045 |
T |
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| Q |
162 |
tgcgttacctcgaccaatttggaaaaactaaggttcat |
199 |
Q |
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| T |
37975046 |
ttcgttacttggatcagtttggaaaaaccaaggttcat |
37975083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 38980600 - 38980652
Alignment:
| Q |
206 |
atttgtcccttttatggacatccaaatccacctgcaccatgtccatgtcctct |
258 |
Q |
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| T |
38980600 |
atttgtccattttatgggcatccaaatccaccagcaccatgtccatgtcctct |
38980652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 32002379 - 32002323
Alignment:
| Q |
62 |
caaaagagaagagattggaacacatttggacaatacctaagaaaccatagaccacca |
118 |
Q |
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| T |
32002379 |
caaaagagaagagattggaacacttttggacaatacttaaggaatcaaagaccacca |
32002323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 39556377 - 39556413
Alignment:
| Q |
61 |
tcaaaagagaagagattggaacacatttggacaatac |
97 |
Q |
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|||||||||||||||||||||||| ||||| |||||| |
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| T |
39556377 |
tcaaaagagaagagattggaacacttttggtcaatac |
39556413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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