View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13826_low_15 (Length: 263)
Name: NF13826_low_15
Description: NF13826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13826_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 41126584 - 41126820
Alignment:
| Q |
18 |
agttaatgatgataaaatcagcgacatcgaacttgtacaaagggcacttctgataggtctcaacaaattcaacattttgaatatctttcccaaagtgact |
117 |
Q |
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| T |
41126584 |
agttaatgatgataaaatcagcgacatcgaacttgtacaaagggcacttctgataggtctcaacaaattcaacattttgaatatctttcccaaagtgact |
41126683 |
T |
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| Q |
118 |
cggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaagaagatgttctacttccgctaataagagcgaggaaggaagccaagg |
217 |
Q |
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| T |
41126684 |
cggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaagaagatgttctacttccgctaataagagcgaggaaggaagccaagg |
41126783 |
T |
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| Q |
218 |
aaaggagattgagcaaaaacaatgttgtttcctatgc |
254 |
Q |
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| T |
41126784 |
aaaggagattgagcaaaaacaatgttgtttcctatgc |
41126820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 2350578 - 2350767
Alignment:
| Q |
18 |
agttaatgatgataaaatcagcgacatcgaacttgtacaaagggcacttctgataggtctcaacaaattcaacattttgaatatctttcccaaagtgact |
117 |
Q |
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| T |
2350578 |
agttaatgatgagaaaatcagtgatattgagcgtgtacaaaggacaattctgttgagtgttaacaaattcaatataataaatttctggccaaaagttact |
2350677 |
T |
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| Q |
118 |
cggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaagaagatgttctacttccgctaataagagcgaggaag |
207 |
Q |
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| T |
2350678 |
cggattttgttttgcaaacgatgggaagagttgttgaagttacgaaaggatcaagaagatgttttgcttccgctgattagagcgaggaag |
2350767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 2326658 - 2326746
Alignment:
| Q |
119 |
ggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaagaagatgttctacttccgctaataagagcgaggaag |
207 |
Q |
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| T |
2326658 |
ggattttgttgcgtaaacaatgggaggaattgttgatgttgcgtagagatcaagaagatgttttgcttccgctgataagagggaggaag |
2326746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 2330373 - 2330461
Alignment:
| Q |
119 |
ggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaagaagatgttctacttccgctaataagagcgaggaag |
207 |
Q |
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| T |
2330373 |
ggattttgttgcgtaaacgatgggatgagttggcgaagttgcttaaagatcaagaagatgttctgcttccgctgataagagcgaggaag |
2330461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 2303103 - 2303190
Alignment:
| Q |
119 |
ggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaagaagatgttctacttccgctaataagagcgaggaa |
206 |
Q |
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| T |
2303103 |
ggattttgttgcgtaaccgatggaaggagtttttgaagttacttaaggatcaagaggatgttctacttccgctgataagagcgaggaa |
2303190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 2320804 - 2320892
Alignment:
| Q |
119 |
ggattttattccgtaaacgatgggaggaattgttgaagttgcgaaaagatcaagaagatgttctacttccgctaataagagcgaggaag |
207 |
Q |
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| T |
2320804 |
ggattttgttgcgtaaccgatgggaggagtttttgaagttacttaaggatcaagaggatgttctgcttccgctgataagagcaaggaag |
2320892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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