View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13826_low_19 (Length: 227)
Name: NF13826_low_19
Description: NF13826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13826_low_19 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 3830770 - 3830991
Alignment:
| Q |
6 |
aataacaacacctttcagccgaagcacaagacaacgttgtatgagcataaaggataaacagggtaacaaaatagaaaaatataatatacctgtcttgcag |
105 |
Q |
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| T |
3830770 |
aataacaacacctttcagccgaagcacaagacaacgttgtacgagcaaaaaggataaaaagggtaacaaaatagaaaaatataatatgcctgtcttgcag |
3830869 |
T |
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| Q |
106 |
cttgtataatgggatacacatcttcaccaggaaaacgactttgaataaatgacatcatatttgccataatcaaatttgtcctctgttgatttttaagcat |
205 |
Q |
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| T |
3830870 |
cttgtataatgggatacacatcttcaccaggaaaacgactttgaataaatgacatcatatttgccataatcaaatttgtcctctgttgatttttaagcat |
3830969 |
T |
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| Q |
206 |
ttgcttaagtttaccgcgcaat |
227 |
Q |
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| T |
3830970 |
ttgcttaagtttaccgcgcaat |
3830991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 216
Target Start/End: Original strand, 3836669 - 3836781
Alignment:
| Q |
104 |
agcttgtataatgggatacacatcttcaccaggaaaacgactttgaataaatgacatcatatttgccataatcaaatttgtcctctgttgatttttaagc |
203 |
Q |
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|||||||||||||| || |||||| ||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| |||||||| | || |
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| T |
3836669 |
agcttgtataatggcattcacatcctcaccagaaaaacgattttgaataaatgacatcatattttccataatcaaatttgtcttctcttgattttcacgc |
3836768 |
T |
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| Q |
204 |
atttgcttaagtt |
216 |
Q |
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| T |
3836769 |
attttctttagtt |
3836781 |
T |
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