View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13826_low_2 (Length: 547)

Name: NF13826_low_2
Description: NF13826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13826_low_2
NF13826_low_2
[»] chr4 (5 HSPs)
chr4 (221-530)||(47630940-47631249)
chr4 (253-340)||(18910339-18910427)
chr4 (14-49)||(47631254-47631289)
chr4 (276-359)||(23255028-23255112)
chr4 (258-306)||(54041964-54042012)
[»] chr1 (1 HSPs)
chr1 (255-367)||(37070972-37071086)
[»] chr8 (5 HSPs)
chr8 (248-367)||(39028976-39029097)
chr8 (257-367)||(13637739-13637850)
chr8 (257-367)||(13738152-13738263)
chr8 (321-367)||(39566779-39566825)
chr8 (292-367)||(17785128-17785204)
[»] chr7 (3 HSPs)
chr7 (240-344)||(33698535-33698640)
chr7 (294-367)||(36031029-36031103)
chr7 (248-340)||(45463257-45463351)
[»] chr2 (2 HSPs)
chr2 (255-367)||(27892647-27892761)
chr2 (255-367)||(6150075-6150188)
[»] chr3 (3 HSPs)
chr3 (255-367)||(2032380-2032493)
chr3 (257-367)||(6955936-6956047)
chr3 (255-303)||(55006974-55007022)
[»] chr5 (2 HSPs)
chr5 (257-306)||(28613394-28613443)
chr5 (257-344)||(6313086-6313174)
[»] chr6 (1 HSPs)
chr6 (223-305)||(30496411-30496494)
[»] scaffold0069 (1 HSPs)
scaffold0069 (258-303)||(4168-4213)


Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 221 - 530
Target Start/End: Complemental strand, 47631249 - 47630940
Alignment:
Q  221 tatcttttctttcccttcattctctctttcatttaaaccaaacaactaaacaattatcttatttttcattcactttctactcacttcattcctaccatta 320  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  47631249 tatcttttctttcccttcattctctctttcattcaaaccaaacaactaaataatcatcttacttttcattcactttctactcatttcattcctaccatta 47631150  T
Q  321 tctttcctcatactttctttccttcagctttcttttctcatccaaaccattcataaaagatcaataatatcatcttccaatacatctagcgtctaatatg 420  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47631149 tctttcctcatactttctttccttcaactttcttttctcatccaaaccattcataaaagatcaataatatcatcttccaatacatctagcgtctaatatg 47631050  T
Q  421 aaaaaataatttataataacctagtatcagacttacgtgcacaattaaattttcagctctttatcttcatgtacatactgattttgtttgtgggtgggct 520  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47631049 aaaaaataatttataataacctagtatcagacttacgtgcacaattaaattttcagctatttatcttcatgtacatactgattttgtttgtgggtgggct 47630950  T
Q  521 aagacccatg 530  Q
    ||||||||||    
T  47630949 aagacccatg 47630940  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 340
Target Start/End: Complemental strand, 18910427 - 18910339
Alignment:
Q  253 ttaaaccaaacaactaaacaattatcttatttttcattcactttctactcac-ttcattcctaccattatctttcctcatactttcttt 340  Q
    |||||||||||||||||| ||| |||| |||||||| | ||||||||||||| ||||||||| | |  |||||||||  ||||||||||    
T  18910427 ttaaaccaaacaactaaataatcatctcatttttcacttactttctactcactttcattccttcaacaatctttccttttactttcttt 18910339  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 47631289 - 47631254
Alignment:
Q  14 atatctaagtatttaatgaataacttcacaagcaat 49  Q
    ||||||||||||||||||||||||||||||||||||    
T  47631289 atatctaagtatttaatgaataacttcacaagcaat 47631254  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 359
Target Start/End: Original strand, 23255028 - 23255112
Alignment:
Q  276 atcttatttttcattcactttctactcac-ttcattcctaccattatctttcctcatactttctttccttcagctttcttttctc 359  Q
    |||||| ||| |||||||||||||| ||| ||||||||| |    ||||||||||||||||| |||||||   ||||||||||||    
T  23255028 atcttactttccattcactttctacacacattcattccttcatcaatctttcctcatactttatttccttatactttcttttctc 23255112  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 54042012 - 54041964
Alignment:
Q  258 ccaaacaactaaacaattatcttatttttcattcactttctactcactt 306  Q
    ||||||||||||||||| |||| | ||| |||||||||||||| |||||    
T  54042012 ccaaacaactaaacaatcatctcactttccattcactttctacccactt 54041964  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 367
Target Start/End: Complemental strand, 37071086 - 37070972
Alignment:
Q  255 aaaccaaacaactaa-acaattatcttatttttcattcactttctactcac-ttcattcctaccattatctttcctcatactttctttccttcagctttc 352  Q
    ||||||||||||||  | ||| |||||| ||| |||||||||||||||||| ||||||||| |    |||||||||||||||||||||||||   |||||    
T  37071086 aaaccaaacaactatgaaaatcatcttactttccattcactttctactcacattcattccttcatcaatctttcctcatactttctttccttatactttc 37070987  T
Q  353 ttttctcatccaaac 367  Q
    ||||||| |||||||    
T  37070986 ttttctcgtccaaac 37070972  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 367
Target Start/End: Original strand, 39028976 - 39029097
Alignment:
Q  248 ttcatttaaaccaaacaactaaac-aattatcttatttttcattcactttctactcac-ttcattcct--accattatctttcctcatactttctttcct 343  Q
    |||||| | ||||||||||||||  ||||||| || ||| |||| ||||||||||||| |||||||||  ||||  |||||||||| |||||||||||||    
T  39028976 ttcattcataccaaacaactaaaataattatcatactttccatttactttctactcacattcattccttaacca--atctttcctcttactttctttcct 39029073  T
Q  344 tcagctttcttttctcatccaaac 367  Q
    |   ||||||||||||||||||||    
T  39029074 tatactttcttttctcatccaaac 39029097  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 367
Target Start/End: Original strand, 13637739 - 13637850
Alignment:
Q  257 accaaacaactaaacaattatcttatttttcattcactttctactcac-ttcattcctaccattatctttcctcatactttctttccttcagctttcttt 355  Q
    |||||||||||||| ||| |||| | ||| |||||||||||||| ||| ||||||||| | |  |||||||||| |||| |||||||||   ||||||||    
T  13637739 accaaacaactaaataatcatctcactttccattcactttctacccactttcattccttcaacaatctttcctcttactatctttcctttcactttcttt 13637838  T
Q  356 tctcatccaaac 367  Q
      ||||||||||    
T  13637839 gatcatccaaac 13637850  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 367
Target Start/End: Original strand, 13738152 - 13738263
Alignment:
Q  257 accaaacaactaaacaattatcttatttttcattcactttctactcac-ttcattcctaccattatctttcctcatactttctttccttcagctttcttt 355  Q
    |||||||||||||| ||| |||| | ||| |||||||||||||| ||| ||||||||| | |  |||||||||| |||| |||||||||   ||||||||    
T  13738152 accaaacaactaaataatcatctcactttccattcactttctacccactttcattccttcaacaatctttcctcttactatctttcctttcactttcttt 13738251  T
Q  356 tctcatccaaac 367  Q
      ||||||||||    
T  13738252 gatcatccaaac 13738263  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 367
Target Start/End: Complemental strand, 39566825 - 39566779
Alignment:
Q  321 tctttcctcatactttctttccttcagctttcttttctcatccaaac 367  Q
    ||||||||||||||||||||||||   |||||| |||||||||||||    
T  39566825 tctttcctcatactttctttcctttcactttctcttctcatccaaac 39566779  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 292 - 367
Target Start/End: Complemental strand, 17785204 - 17785128
Alignment:
Q  292 actttctactcactt-cattcctaccattatctttcctcatactttctttccttcagctttcttttctcatccaaac 367  Q
    ||||||||||||||| |||||||   |  |||||||||||||||||||||||||   ||||||||  ||||||||||    
T  17785204 actttctactcactttcattcctttaacaatctttcctcatactttctttccttatcctttctttggtcatccaaac 17785128  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 344
Target Start/End: Original strand, 33698535 - 33698640
Alignment:
Q  240 ttctctctttcatttaaaccaaacaactaaacaattatcttatttttcattcactttctactcac-ttcattcctaccattatctttcctcatactttct 338  Q
    ||||| |||||||||| ||||||||||||||  || |||| | ||| ||||||| |||||||||| ||||||||| | || |||||||||| |||| |||    
T  33698535 ttctcactttcatttataccaaacaactaaaatatcatctcactttccattcacattctactcactttcattccttcaataatctttcctcttactatct 33698634  T
Q  339 ttcctt 344  Q
    ||||||    
T  33698635 ttcctt 33698640  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 367
Target Start/End: Original strand, 36031029 - 36031103
Alignment:
Q  294 tttctactcactt-cattcctaccattatctttcctcatactttctttccttcagctttcttttctcatccaaac 367  Q
    ||||||||||||| ||||||||| ||  ||||| ||| ||||||||||||||   |||||| |||||||||||||    
T  36031029 tttctactcactttcattcctacaatattcttttctcttactttctttcctttcactttctcttctcatccaaac 36031103  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 340
Target Start/End: Complemental strand, 45463351 - 45463257
Alignment:
Q  248 ttcatttaaaccaaacaactaaac-aattatcttatttttcattcactttctactcac-ttcattcct--accattatctttcctcatactttcttt 340  Q
    |||||| | ||||||||||||||  ||| ||| |||||| |||||||||||||||||| |||||||||  ||||  ||||||||| |||||||||||    
T  45463351 ttcattcataccaaacaactaaaataatcatcatattttccattcactttctactcacattcattccttaacca--atctttccttatactttcttt 45463257  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 255 - 367
Target Start/End: Original strand, 27892647 - 27892761
Alignment:
Q  255 aaaccaaacaactaa-acaattatcttatttttcattcactttctactcac-ttcattcctaccattatctttcctcatactttctttccttcagctttc 352  Q
    ||||||||||||||  | ||| |||||| ||| |||||||||||||||||| ||||||||| |    ||||||||||||||| |||||||||   |||||    
T  27892647 aaaccaaacaactatgaaaatcatcttactttccattcactttctactcacattcattccttcatcaatctttcctcatactctctttccttatactttc 27892746  T
Q  353 ttttctcatccaaac 367  Q
    ||||||| |||||||    
T  27892747 ttttctcgtccaaac 27892761  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 367
Target Start/End: Complemental strand, 6150188 - 6150075
Alignment:
Q  255 aaaccaaacaactaaacaattatcttatttttcattcactttctactcac-ttcattcctaccattatctttcctcatactttctttccttcagctttct 353  Q
    |||||||||||||||| ||| || | | ||| || ||||||||||||||| ||||||||| | |  |||||||||  |||| |||||||||   ||||||    
T  6150188 aaaccaaacaactaaataatcatttcactttccactcactttctactcactttcattccttcaacaatctttccttttactatctttcctttcactttct 6150089  T
Q  354 tttctcatccaaac 367  Q
    ||  ||||||||||    
T  6150088 ttgatcatccaaac 6150075  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 367
Target Start/End: Original strand, 2032380 - 2032493
Alignment:
Q  255 aaaccaaacaactaaacaattatcttatttttcattcactttctactca-cttcattcctaccattatctttcctcatactttctttccttcagctttct 353  Q
    |||||||||||||||| ||| |||| ||||| |||||||||||||||||  ||||||||| | |  |||||||||  |||| |||||||||   ||||||    
T  2032380 aaaccaaacaactaaataatcatctcattttccattcactttctactcattttcattccttcaacaatctttccttttactatctttcctttcactttct 2032479  T
Q  354 tttctcatccaaac 367  Q
    ||  ||||||||||    
T  2032480 ttgatcatccaaac 2032493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 367
Target Start/End: Original strand, 6955936 - 6956047
Alignment:
Q  257 accaaacaactaaacaattatcttatttttcattcactttctactcac-ttcattcctaccattatctttcctcatactttctttccttcagctttcttt 355  Q
    |||||||||||||| ||| ||||   ||| |||||||||||||||||| ||||||||| | |  |||||||||| |||| |||||||||   ||||||||    
T  6955936 accaaacaactaaataatcatctctctttccattcactttctactcactttcattccttcaacaatctttcctcttactatctttcctttcactttcttt 6956035  T
Q  356 tctcatccaaac 367  Q
      ||||||||||    
T  6956036 gatcatccaaac 6956047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 55006974 - 55007022
Alignment:
Q  255 aaaccaaacaactaaacaattatcttatttttcattcactttctactca 303  Q
    |||||||||||||||| ||| |||| | ||| |||||||||||||||||    
T  55006974 aaaccaaacaactaaataatcatctcactttccattcactttctactca 55007022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 28613394 - 28613443
Alignment:
Q  257 accaaacaactaaacaattatcttatttttcattcactttctactcactt 306  Q
    |||||||||||||| ||| |||||| ||||||||||||||||| ||||||    
T  28613394 accaaacaactaaaaaatcatcttacttttcattcactttctattcactt 28613443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 344
Target Start/End: Original strand, 6313086 - 6313174
Alignment:
Q  257 accaaacaactaaacaattatcttatttttcattcactttctactcac-ttcattcctaccattatctttcctcatactttctttcctt 344  Q
    ||||||||  |||| ||| |||||||||| |||| ||||||||||| | ||||||||| | |  |||||||| |||||| |||||||||    
T  6313086 accaaacacttaaataatcatcttattttccatttactttctactctctttcattccttcaacaatctttccacatactatctttcctt 6313174  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 30496494 - 30496411
Alignment:
Q  223 tcttttctttcccttcattctctctttcatttaaaccaaacaactaaa-caattatcttatttttcattcactttctactcact 305  Q
    ||||| ||||| ||| ||| || |||||||| | |||||||||||||| |||| |||| | ||| |||||||||||||||||||    
T  30496494 tctttcctttcactttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcact 30496411  T

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Target: scaffold0069 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 303
Target Start/End: Complemental strand, 4213 - 4168
Alignment:
Q  258 ccaaacaactaaacaattatcttatttttcattcactttctactca 303  Q
    ||||| ||||||||||| |||| ||||| |||||||||||||||||    
T  4213 ccaaataactaaacaatcatctcattttccattcactttctactca 4168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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