View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13826_low_3 (Length: 487)
Name: NF13826_low_3
Description: NF13826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13826_low_3 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 350
Target Start/End: Original strand, 16807229 - 16807556
Alignment:
| Q |
20 |
gaatctttatgcatactccttaagggtgtatttctttgcttaaattactgcattccgtgccaccatcggtttcagctactttctcctggtagtgaaatgg |
119 |
Q |
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| T |
16807229 |
gaatctttctacatactccttaagggtgtatttctttccttaaattactgcattccgtgccaccatcggtttcagctactttctcctggcagtgaaatgg |
16807328 |
T |
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| Q |
120 |
gaggtaagctcttcacaaagctccctctaacaatcaatagagtcgtccttaaggcccttaaaccaagtcctcgatgcaactttcaatgcgagggcaaata |
219 |
Q |
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| T |
16807329 |
ggggtaagctcttcacaaagctccctctaacaatcaatagagtcgtcctaaaggcctttaaaccaagtcctcgatgcaactttcaatgcgaggacaaata |
16807428 |
T |
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| Q |
220 |
ttttacacttaattgcccgcgctcctgatgggagttgttgatggtatcaatgtcgctgacatgtatcttttgggttggggtgttaatgaggaggcctaga |
319 |
Q |
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| T |
16807429 |
ttttacacttaattgcccgagctcctgatgggagttggtgatggtatcaatgtcgctgacatgtatcttttgggttggggtgttaatggggagg-ctaga |
16807527 |
T |
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| Q |
320 |
agtggcgtatatgaggctgtttgcatgggaa |
350 |
Q |
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| T |
16807528 |
agtggcg--tatgaggctgtttgcatgggaa |
16807556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 375 - 487
Target Start/End: Original strand, 16807609 - 16807721
Alignment:
| Q |
375 |
gtatactgttaaaagtgtttatactaacttaacctatgcttaagtcaattttaatgtgggttataagcatgttttgtgggttaaagcggttccactcaaa |
474 |
Q |
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| T |
16807609 |
gtatacggttaaaagtgtttatactaactaaactgatgcttaagtcaattttaatgtgggttataagcatgttttgtgggttaaagcgattccactcaaa |
16807708 |
T |
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| Q |
475 |
gttaacatttttg |
487 |
Q |
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| T |
16807709 |
gttaacatttttg |
16807721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 416 - 487
Target Start/End: Complemental strand, 11966727 - 11966657
Alignment:
| Q |
416 |
aagtcaattttaatgtgggttataagcatgttttgtgggttaaagcggttccactcaaagttaacatttttg |
487 |
Q |
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| T |
11966727 |
aagtcgatttcaatgtgggttataatcatgtgttgtggctt-aagcggttccgctcaaagttatcatttttg |
11966657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 487
Target Start/End: Complemental strand, 3329304 - 3329243
Alignment:
| Q |
426 |
taatgtgggttataagcatgttttgtgggttaaagcggttccactcaaagttaacatttttg |
487 |
Q |
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| T |
3329304 |
taatgtggagtataatcatgtgtggtggcttaaagcggtgccgctcaaagttaacatttttg |
3329243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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