View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13826_low_5 (Length: 460)
Name: NF13826_low_5
Description: NF13826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13826_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 20 - 453
Target Start/End: Original strand, 26576945 - 26577386
Alignment:
| Q |
20 |
tacattttatttgcatgtgatagtcaaaactgacattaagccaactcaattattaatcaacattattactaggatttagggaacctataaaagtgtgaat |
119 |
Q |
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| T |
26576945 |
tacattttatttgcatgtgatagtcaaaactgacattaagccaactcaattattaatcaacattattactaggatttagggaacctataaaagtgtgaat |
26577044 |
T |
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| Q |
120 |
ctgtgtgatactttatactccaacactaatgtctttaatgttatttccaaaaaatgggatatcttattgtatattatccataatgtattttggtggtgct |
219 |
Q |
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| T |
26577045 |
ctgtgtgatactttatactccaacactcatgtctttaatgttatttccaaaaaatgggatatcttatggtatattatccataatgtattttggtggtgct |
26577144 |
T |
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| Q |
220 |
tttatccatattgtaatcacaaagaccaaggtacatgttttagatcaatgtaatgcaatgtaatagattttgattatttgaataattgatgttcgatgta |
319 |
Q |
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| T |
26577145 |
tttatccatattgtaatcacaaagaccaaggtacatgttttagatcaatgtaatgcaatgtaatagattttgattatttgaataattgatgttccatgtg |
26577244 |
T |
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| Q |
320 |
atgtgtccgttcagtgataagagttttaactttgtaatctcgagagataagtttgaatcagattaaaacagattttggtattggtttattgca------- |
412 |
Q |
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| T |
26577245 |
atgtgtccgttcaatgataagagttttaactttgtaatctcgagagataagtttgaaccagatcaaaacagatcttggtattggtttattgcatcaacgt |
26577344 |
T |
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| Q |
413 |
-ttttgtgctacatttttcaaattatttcaaattagtatatt |
453 |
Q |
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| T |
26577345 |
gttttgtgctacatttttcaaataatttcaaattagtatatt |
26577386 |
T |
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