View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13826_low_7 (Length: 438)
Name: NF13826_low_7
Description: NF13826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13826_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 35822109 - 35821671
Alignment:
| Q |
1 |
attattaaataaaattaaatatgatcatcatttataataaatctaagctgagaatcaagatgatcaccaaatgcttaaaaatgcatcacacatgtg-taa |
99 |
Q |
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| T |
35822109 |
attattaaataaaattaaatatgatcatcatttataataaatctaagttgagaatcaagatgatcaccaaatgcttaaaaatgcatcacacatgtggtaa |
35822010 |
T |
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| Q |
100 |
ttttaacaagttgacaaatatattagtaaatgaagaaactgtggcagaataattttcaaaccggtccatcatgaaactactattgaaaccatcaagtaac |
199 |
Q |
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| T |
35822009 |
ttttaacatgttgacaaatatattagtaaatgaagaaactgtggcagaataattttcaaaccggtccatcatgaaactactattgaaaccatcaagtaac |
35821910 |
T |
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| Q |
200 |
cagtcaaagaggtacctgaagcagtgaatgcaaattgaagatgcagactgaagaagagacttcatttgaggagacaccaagattaaagcaaaacaacgag |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35821909 |
cagtcaaagaggtacctgaagcagtgaatgcaaattgaagatgcagactgaagaagagacttcatttgaggagacaccaagattaaagcaaaacaacgag |
35821810 |
T |
|
| Q |
300 |
acatgtctgaaagcggacgctaactgcaaatataacaaagacgttgaccacataaggcgcagtggaaggaaaggagacgtcactcaaagatagagctccg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35821809 |
acatgtctgaaagcggacgctaactgcaaatataacaaagacgttgaccacataaggcgcagtggaaggaaaggagacgtcacttgaagatagagctccg |
35821710 |
T |
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| Q |
400 |
tgacagactgaagacgaagaccgaaacataaacataatt |
438 |
Q |
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| T |
35821709 |
tgacagactgaagacgaagagcgaaacataaacataatt |
35821671 |
T |
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