View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13827_high_12 (Length: 317)
Name: NF13827_high_12
Description: NF13827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13827_high_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 44018306 - 44018121
Alignment:
| Q |
18 |
acacccaggttgctctcttacatgcctcacaaattacactattttctctatcattttcttcaaatagaaatcaactgtaggcgctcttaaaattcaagtt |
117 |
Q |
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| T |
44018306 |
acaccaaggttgctctcttacatgcctcacaaattacactattttctctatcattttcttcaaatagaaatcaactgtaggcgctcttaaaattcaagtt |
44018207 |
T |
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| Q |
118 |
taagttggtaaaatatatgcattgtgcactagaaatatttaccttctaccctgtttataaaaacatattctattcctatcaataaa |
203 |
Q |
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| T |
44018206 |
taagttggtaaaatatatgcattgtgcactagaaatatttaccttctactctgtttataaaaacatattctattcctatcaataaa |
44018121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Complemental strand, 44017957 - 44017928
Alignment:
| Q |
242 |
attttcaatgtggtaccttgttttttccaa |
271 |
Q |
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| T |
44017957 |
attttcaatgtggtaccttgttttttccaa |
44017928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 20454264 - 20454309
Alignment:
| Q |
272 |
gagaaatgatatttgtagttgtgacaactttctctctcatactcac |
317 |
Q |
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| T |
20454264 |
gagaaatgatatttgtatttgtgacaacattctctctcatattcac |
20454309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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