View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13827_high_16 (Length: 239)
Name: NF13827_high_16
Description: NF13827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13827_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 11526727 - 11526622
Alignment:
| Q |
1 |
ataacataatataaaattattttgattaaccaacctaaatgattgtttttaaaagcatatttgattgcaatagattcttaatttagtttgctgttattga |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11526727 |
ataacataatataaaatcattttgattaaccaacctaaatgattgtttttaaaagcatatttgattgcaatagattcttaatttagtttgctgttattga |
11526628 |
T |
|
| Q |
101 |
atgaca |
106 |
Q |
| |
|
|||||| |
|
|
| T |
11526627 |
atgaca |
11526622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 38088494 - 38088626
Alignment:
| Q |
1 |
ataacataatataaaattattttgattaaccaacctaaatgattgtttttaaaagcatatttgattgcaatagattcttaa-tttagtttgctgttattg |
99 |
Q |
| |
|
||||||||||||||||| || ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||| |||||||| |
|
|
| T |
38088494 |
ataacataatataaaatcat---gataaacca-cctaaatgattgtttttaaaagcatatttgattgcaatagatttttaattttaatttgatgttattg |
38088589 |
T |
|
| Q |
100 |
aatgacatatataacagtatgacaaaacaatggttcatg |
138 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
38088590 |
aatgac--atatggcagtatgacaaaacaatggttcatg |
38088626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 4846191 - 4846294
Alignment:
| Q |
5 |
cataatataaaattattttgattaaccaacctaaatgattgtttttaaaagcatatttgattgcaatagattcttaatttagtttgctgttattgaatga |
104 |
Q |
| |
|
||||||||||||| | |||||||||| | |||||||||||||||||||||| | |||| |||||| | |||||| ||||||||||||| |||||||||| |
|
|
| T |
4846191 |
cataatataaaatcactttgattaacta-cctaaatgattgtttttaaaagtaaatttaattgcagttgattctccatttagtttgctgctattgaatga |
4846289 |
T |
|
| Q |
105 |
catat |
109 |
Q |
| |
|
||||| |
|
|
| T |
4846290 |
catat |
4846294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 4080513 - 4080410
Alignment:
| Q |
5 |
cataatataaaattattttgattaaccaacctaaatgattgtttttaaaagcatatttgattgcaatagattcttaatttagtttgctgttattgaatga |
104 |
Q |
| |
|
||||||||||||| | |||||||||| | |||||||||||||||||||||| | ||||||||||| | |||||| ||||||||||||| |||||||||| |
|
|
| T |
4080513 |
cataatataaaatcactttgattaacta-cctaaatgattgtttttaaaagtaaatttgattgcagttgattctccatttagtttgctgctattgaatga |
4080415 |
T |
|
| Q |
105 |
catat |
109 |
Q |
| |
|
||||| |
|
|
| T |
4080414 |
catat |
4080410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University