View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13827_high_3 (Length: 446)
Name: NF13827_high_3
Description: NF13827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13827_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-116; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 206 - 430
Target Start/End: Original strand, 7605247 - 7605471
Alignment:
| Q |
206 |
taacatgatgttgaggtataaatgagaacaaaaggccaaacatgacagcaactatatagtcatcaaaacaatagcaaacccacaaatactcctgcatcac |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7605247 |
taacatgatgttgaggtataaatgagaacaaaaggccaaacatgacaacaactatatagtcatcaaaacaatagcaaacccacgaatactcctgcatcac |
7605346 |
T |
|
| Q |
306 |
agccagcactataacagaaaggacatggaggcatagcagaaccgatagggagatctcaccaccaaaaggaaagcaaaaggacgccaccacagccgctgaa |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7605347 |
agccagcactataacagaaaggacatggaggcatagcagaaccgatagggagatctcaccaccaaaaggaaagcaaaaggaagccaccacagccgctgaa |
7605446 |
T |
|
| Q |
406 |
actgcagcagcacctaaacccaaac |
430 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
7605447 |
actgcagcagcacctaaacccaaac |
7605471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 206 - 430
Target Start/End: Original strand, 31768809 - 31769034
Alignment:
| Q |
206 |
taacatgatgttgaggtataaatgagaacaaaaggccaaacatgacagcaactatatagtcatcaaaacaat-agcaaacccacaaatactcctgcatca |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
31768809 |
taacatgatgttgaggtataaatgagaacaaaaggccaaacatgacaacaactatatagtcatcaaaacaattagcaaacccacgaatactcctgcatca |
31768908 |
T |
|
| Q |
305 |
cagccagcactataacagaaaggacatggaggcatagcagaaccgatagggagatctcaccaccaaaaggaaagcaaaaggacgccaccacagccgctga |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31768909 |
cagccagcactataacagaaaggacatggaggcatagcagaaccgatagggagatcttaccaccaaaaggaaagcaaaaggaagccaccacagccgctga |
31769008 |
T |
|
| Q |
405 |
aactgcagcagcacctaaacccaaac |
430 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
31769009 |
aactgcagcagcacctaaacccaaac |
31769034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 310 - 400
Target Start/End: Complemental strand, 14186962 - 14186872
Alignment:
| Q |
310 |
agcactataacagaaaggacatggaggcatagcagaaccgatagggagatctcaccaccaaaaggaaagcaaaaggacgccaccacagccg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14186962 |
agcactataacagaaaggacatggaggcatagcagaaccgatagggagatctcaccaccaaaaggaaagcaaaaggaagccaccacagccg |
14186872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 31768627 - 31768724
Alignment:
| Q |
24 |
aatttcggtctccctcaaaggcaagacacaaaaaacacttgcgaataaagccaataaggcaaaatacaaataaggtgccgtatataccggatcaccgg |
121 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31768627 |
aatttcggtctccctaaaaggcaagacacaaaaaacaactgcggataaagccaataaggcaaaatacaaataaggtgccgtatatagcggatcaccgg |
31768724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 14187217 - 14187119
Alignment:
| Q |
24 |
aatttcggtctccctcaaaggcaagacacaaaaaacacttgcgaataaagccaataaggcaaaatacaaataaggtgccgtatata-ccggatcaccgg |
121 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14187217 |
aatttcggtctccctaaaaggcaagacacgaaaaacaattgtggataaagccaataaggcaaaatacaaataaggtgccgtatataggcggatcaccgg |
14187119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 7605065 - 7605162
Alignment:
| Q |
24 |
aatttcggtctccctcaaaggcaagacacaaaaaacacttgcgaataaagccaataaggcaaaatacaaataaggtgccgtatataccggatcaccgg |
121 |
Q |
| |
|
||||| ||||||||| |||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
7605065 |
aattttggtctccctaaaaggcaagacataaaaaacaattgcggataaagccaataaggcaaaatacaaataaggtgtcgtatatagtggatcaccgg |
7605162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 14187034 - 14186959
Alignment:
| Q |
206 |
taacatgatgttgaggtataaatgagaacaaaaggccaaacatgacagcaactatatagtcatcaaaacaatagca |
281 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14187034 |
taacatgatactgaggtataaatgagaacaaaaggccaaacatgacaacaactatatagtcatcaaaacaatagca |
14186959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 206 - 430
Target Start/End: Complemental strand, 41813156 - 41812932
Alignment:
| Q |
206 |
taacatgatgttgaggtataaatgagaacaaaaggccaaacatgacagcaactatatagtcatcaaaacaatagcaaacccacaaatactcctgcatcac |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41813156 |
taacatgatgttgaggtataaatgagaacaaaaggccaaacatgacaacaactatatagtcatcaaaacaatagcaaacccacgaatactcctgcatcac |
41813057 |
T |
|
| Q |
306 |
agccagcactataacagaaaggacatggaggcatagcagaaccgatagggagatctcaccaccaaaaggaaagcaaaaggacgccaccacagccgctgaa |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41813056 |
agccagcactataacagaaaggacatggaggcatagcagaaccgatagggagatctcaccaccaaaaggaaagcaaaaggaagccaccacagccgctgaa |
41812957 |
T |
|
| Q |
406 |
actgcagcagcacctaaacccaaac |
430 |
Q |
| |
|
||||||| ||||||||||||||||| |
|
|
| T |
41812956 |
actgcagtagcacctaaacccaaac |
41812932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 41813338 - 41813241
Alignment:
| Q |
24 |
aatttcggtctccctcaaaggcaagacacaaaaaacacttgcgaataaagccaataaggcaaaatacaaataaggtgccgtatataccggatcaccgg |
121 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41813338 |
aatttcggtctccctaaaaggcaagacacaaaaaacaattgcggataaagtcaataaggcaaaatacaaataaggtgccgtatatagcggatcaccgg |
41813241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 24278904 - 24278818
Alignment:
| Q |
24 |
aatttcggtctccctcaaaggcaagacacaaaaaacacttgcgaataaagccaataaggcaaaatacaaataaggtgccgtatatac |
110 |
Q |
| |
|
||||| ||||||||| |||||||||||||| |||||| || || ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24278904 |
aattttggtctccctaaaaggcaagacacagaaaacaattacggataaagccaataaagcaaaatacaaataaggtgccgtatatac |
24278818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University