View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13827_high_5 (Length: 381)
Name: NF13827_high_5
Description: NF13827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13827_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 33683607 - 33683242
Alignment:
| Q |
1 |
actatggctagcagcagttatattggtagttggtatatgcacatactctttcaagaagatgtttgttacctatgtgatgggtcttgttggaatttctggt |
100 |
Q |
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| T |
33683607 |
actatggctagcagcagttatattggtagttggtatatgcacatactctttcaagaagatgtttgttacctatgtgttgggtcttgttggaatttctggt |
33683508 |
T |
|
| Q |
101 |
gttcttttacctgattgggattatttcaaccgtgatgtttctcgttggccttatcctgttactgttgaggaaagatcagaagcttctctttctcatggat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33683507 |
gttcttttacctgattgggattatttcaaccgtgatgtttctcgttggccttatcctgttactgttgaggaaagatcagcagcttctctttctcatggat |
33683408 |
T |
|
| Q |
201 |
ctgtatttctaaagtgagtcccttaattcatttatattctttatatatactcttgtagactagattttgatgaatcaatttaaatcgaaggtgagattgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33683407 |
ctgtatttctaaagtgagtcccttaattcatttatattctttatatatactcttgtagactagattttgatgaatcaatttaaatcgaaggtaagattgc |
33683308 |
T |
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| Q |
301 |
tagaatcacaatgaataatcgtgatttgaataaagttacgtcttgaaatcatggtaccaccaaaat |
366 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33683307 |
tagaatcacaatgaataattgtgatttgaataaagttacgtcttgaaatcatggtgccaccaaaat |
33683242 |
T |
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