View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13827_low_1 (Length: 453)
Name: NF13827_low_1
Description: NF13827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13827_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 30 - 442
Target Start/End: Original strand, 29133285 - 29133702
Alignment:
| Q |
30 |
taacgaacgagttaggctaaactccgatgatagtataatgtatgattggtttaaattaatgtaatgattgaatgattgtgttatatttaatgtaatcatt |
129 |
Q |
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| T |
29133285 |
taacgaacgagttaggctaaactccgatgatagtatagtgtatgattggtttaaattaatgtaatgattgaaagattgt--tatatttaatgtaatcatt |
29133382 |
T |
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| Q |
130 |
tgactcttattttaaaatttataacccctacattattaatgaagtactattttaaattaatactaaaattcttcatctaaatcatcattaacgttttgac |
229 |
Q |
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| T |
29133383 |
tgactcttattttaaaatttacaatcactactttattaatgaa--actattttaaattaatactaaaattcttcatctaaatcatcattaacgttttgac |
29133480 |
T |
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| Q |
230 |
agaagtttaactgttttgaacctgtaaaaatatctaatgtttcatacgttcatttg---------aagcttggcttactatatgatagtgaatttgcttt |
320 |
Q |
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| T |
29133481 |
agaagtttaactgttttgaacctgtaaaaatatctaatgtttcatactttcatttgctaaaaaataaacttggcttactatatgatagtgaatttgcttt |
29133580 |
T |
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| Q |
321 |
cgtcacatgcatttaatacctatatcataccctcaaacaaaataacttgtcatcattcaatgagtttggagtacatttttacttcatgacaagttatttc |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29133581 |
cgtcacatgcatttaatacctatatcataccctcaaacaaaataacttgtcatcattcaatgagtttggagtacatttttacttcatgacaagttatttc |
29133680 |
T |
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| Q |
421 |
aggaccaaaataaccaaccttt |
442 |
Q |
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| T |
29133681 |
aggaccaaaataaccaaccttt |
29133702 |
T |
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