View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13827_low_11 (Length: 337)
Name: NF13827_low_11
Description: NF13827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13827_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 34978155 - 34978460
Alignment:
| Q |
18 |
atctacctggtttattgagttgacggcatcattttcgtatcaatgctttgtactatactacacttttacaggttttaaatcatcctggtgacggtggagt |
117 |
Q |
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| T |
34978155 |
atctacctggtttattgagttgacggcatcattttcgtatcaatgctttgtactataccacacttttacaggttttaaatcatcctggtgacggtggagt |
34978254 |
T |
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| Q |
118 |
tcagcgcacattagagttaggaactggaatgcctacaatttggctcttcagaatcagagcacttaaattgccttcagtttgcaatggaattatatatgcg |
217 |
Q |
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| T |
34978255 |
tcagcgcacattagagttgggaactggaatgcctacaatttggctctgcagaatcagagcacttaaattgccttcagtttgcaatggaat----tatgcg |
34978350 |
T |
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| Q |
218 |
ctcagaacaccatatcagccgcaggaggaaacaacatcagcctgttctaccaccttcatcatagcttatccgagcaaatgcgccccagaaacattctctt |
317 |
Q |
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| T |
34978351 |
ctcagaacaccatatcagccgcaggaggaaacaacatcagcctgttctaccaccttcatcatagcttatccgagcaaatgcgccccagaaacattctctt |
34978450 |
T |
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| Q |
318 |
ttacttcatc |
327 |
Q |
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|||||||||| |
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| T |
34978451 |
ttacttcatc |
34978460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 103 - 240
Target Start/End: Original strand, 34992809 - 34992943
Alignment:
| Q |
103 |
tggtgacggtggagttcagcgcacattaga-gttaggaactggaatgcctacaatttggctcttcagaatcagagcacttaaattgccttcagtttgcaa |
201 |
Q |
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| T |
34992809 |
tggtgatggtggagtcgaacgcacattagaagttaggaactggaatgcctacaatttggctctgcagaatcagagcacttaaattgccttcagtttgcaa |
34992908 |
T |
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| Q |
202 |
tggaattatatatgcgctcagaacaccatatcagccgca |
240 |
Q |
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| T |
34992909 |
tggaat----tatgtgctcagaacaccatatcagccgca |
34992943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 34986023 - 34986124
Alignment:
| Q |
135 |
taggaactggaatgcctacaatttggctcttcagaatcagagcacttaaattgccttcagtttgcaatggaattatatatgcgctcagaacaccatatca |
234 |
Q |
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| T |
34986023 |
taggaactggaatgcctacaatttggctctgcagaatctgagcacttaaattgccttcagtttgcaatggaat----tatgtgctcagaacaccatatca |
34986118 |
T |
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| Q |
235 |
gccgca |
240 |
Q |
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|||||| |
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| T |
34986119 |
gccgca |
34986124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 34986610 - 34986669
Alignment:
| Q |
33 |
tgagttgacggcatcattttcgtatcaatgctttgtactatactacacttttacaggttt |
92 |
Q |
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| T |
34986610 |
tgagttgacggtatcattttcgtatcaatgctttgtactatgctacacttttacaggttt |
34986669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 34985296 - 34985365
Alignment:
| Q |
18 |
atctacctggtttattgagttgacggcatcattttcgtatcaatgctttgtactatactacacttttaca |
87 |
Q |
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| T |
34985296 |
atctacctggtttattgagttgatggcgtcattttcgtatcaacgctctgtactatgctacacttttaca |
34985365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 34992059 - 34992120
Alignment:
| Q |
18 |
atctacctggtttattgagttgacggcatcattttcgtatcaatgctttgtactatactaca |
79 |
Q |
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|||||||||||||||| ||||||| ||||||| |||||||||||||||| |||| ||||| |
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| T |
34992059 |
atctacctggtttattaggttgacgatatcatttccgtatcaatgctttgtgctatgctaca |
34992120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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