View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13827_low_14 (Length: 320)

Name: NF13827_low_14
Description: NF13827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13827_low_14
NF13827_low_14
[»] chr1 (1 HSPs)
chr1 (13-305)||(52375598-52375890)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 13 - 305
Target Start/End: Original strand, 52375598 - 52375890
Alignment:
Q  13 cttctcaacaacaatgacatttcacaaaatgcaacaccgtcgttatctttgaaggaagctatcagcgctagcatttccagagggaaattagtttctggcg 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52375598 cttcacaacaacaatgacatttcacaaaatgcaacaccgtcgttatctttgaaggaagctatcagcgctagcatttccagagggaaattagtttctggcg 52375697  T
Q  113 caacagctgcaactaattcaaatgcaatagccacatcaccatcttcttcatcatcctcaattgtgcctacttatgcaaatccgttttggattgagttatt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  52375698 caacagctgcaactaattcaaatgcaatagccacatcaccatcttcttcatcatcctcaatcgtgcctacttatgcaaatccgttttggattgagttatt 52375797  T
Q  213 aacactttcgaagcgttcaataactaattcaaggcgaatgcctgaactatttgggataagattgggcgctgttatggtaactggtttcattct 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52375798 aacactttcgaagcgttcaataactaattcaaggcgaatgcctgaactatttgggataagattgggcgctgttatggtaactggtttcattct 52375890  T

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