View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13827_low_16 (Length: 294)
Name: NF13827_low_16
Description: NF13827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13827_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 133 - 279
Target Start/End: Complemental strand, 6454254 - 6454107
Alignment:
| Q |
133 |
agtgattatatgatcatgagtgagtcatgatttgcattgttttcgaggtacccttttagtaggatccaactagggttgatttaaagaattgcannnnnnn |
232 |
Q |
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| T |
6454254 |
agtgattatatgatcatgagtgagtcatgatttgcattgttttcgaggtacccttttagtaggatccaactagggttgatttaaagaattgcattttttt |
6454155 |
T |
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| Q |
233 |
aatataacacagagatgaattaatttttccagagac-tactagtaact |
279 |
Q |
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| T |
6454154 |
aatataacacagagatgaattaatttttccagagacttactagtaact |
6454107 |
T |
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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 6454376 - 6454314
Alignment:
| Q |
11 |
caaaggtgaaaataaagtatgcattttaggatgtgatttaattagggtatagtatagagtact |
73 |
Q |
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| T |
6454376 |
caaaggtgaaaataaagtatgcattttaggatgtgatttaattagggtatagtatagagtact |
6454314 |
T |
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