View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13827_low_17 (Length: 275)
Name: NF13827_low_17
Description: NF13827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13827_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 4 - 258
Target Start/End: Complemental strand, 260342 - 260087
Alignment:
| Q |
4 |
ctattgtttggggtggattccagacatttgacttaaaatgtgttacaatctgatatttatagtttgcctccatatagaaatattattgctaactataggt |
103 |
Q |
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| T |
260342 |
ctattttttggggtggattccagacatttgacttaaaatgtgttacaatctgatatttattgtttgcctccatatagaaatattattgctaactataggt |
260243 |
T |
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| Q |
104 |
tatacatccttttaaaaaagaaaacaatagtttatgcatttaatctcataatatata-tttgatttttctagttggcctaacattttcttagagaacatg |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
260242 |
tatacatccttttaaaaaagaaaacaatagtttatgcatttaatctcataatatatattttgatttttctagttagcctaacattttcttagagaacatg |
260143 |
T |
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| Q |
203 |
tcttatttctcaaaataaccagttcactttttctgtgctacctgcaggtggggatt |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
260142 |
tcttatttctcaaaataaccagttcactttttctgtgctacctgcaggtggggatt |
260087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 4 - 258
Target Start/End: Original strand, 38111448 - 38111702
Alignment:
| Q |
4 |
ctattgtttggggtggattccagacatttgacttaaaatgtgttacaatctgatatttatagtttgcctccatatagaaatattattgctaactataggt |
103 |
Q |
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| T |
38111448 |
ctattttttggggtggattccagacatttgacttaaaatgtgttacaatctgatatttattgtttgcctccatatagaaatattattgctaactataggt |
38111547 |
T |
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| Q |
104 |
tatacatccttttaaaaaagaaaacaatagtttatgcatttaatctcataatatatatttgatttttctagttggcctaacattttcttagagaacatgt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38111548 |
tatacatccttttaaaaaagaaaacaatagtttatgcatttaatctcataatatatatttgatttttctagttggcccaacattttcttagagaacatgt |
38111647 |
T |
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| Q |
204 |
cttatttctcaaaataaccagttcactttttctgtgctacctgcaggtggggatt |
258 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||||||| |||| |
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| T |
38111648 |
cttatttctcaaagtaaccagttcactttttccgtgctacctgcaggtggagatt |
38111702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 4 - 258
Target Start/End: Original strand, 38121077 - 38121331
Alignment:
| Q |
4 |
ctattgtttggggtggattccagacatttgacttaaaatgtgttacaatctgatatttatagtttgcctccatatagaaatattattgctaactataggt |
103 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38121077 |
ctattttttggggtggattccagacatttgacttaaaatgtgttacaatctgatatttattgtttgcctccatatagaaatattattgctaactataggt |
38121176 |
T |
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| Q |
104 |
tatacatccttttaaaaaagaaaacaatagtttatgcatttaatctcataatatatatttgatttttctagttggcctaacattttcttagagaacatgt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38121177 |
tatacatccttttaaaaaagaaaacaatagtttatgcatttaatctcataatatatatttgatttttctagttggcccaacattttcttagagaacatgt |
38121276 |
T |
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| Q |
204 |
cttatttctcaaaataaccagttcactttttctgtgctacctgcaggtggggatt |
258 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||||||| |||| |
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| T |
38121277 |
cttatttctcaaagtaaccagttcactttttccgtgctacctgcaggtggagatt |
38121331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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