View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13827_low_18 (Length: 247)
Name: NF13827_low_18
Description: NF13827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13827_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 260404 - 260641
Alignment:
| Q |
1 |
caaaaatagaatgcttttaagggatacataccatccagaggttaaaagaaggcttctttttggttccccggaagcagtggtatatgaggcttctatctgc |
100 |
Q |
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| T |
260404 |
caaaaatagaatgtttttaagggatacataccatccagaggttaaaagaaggcttctttttgtttccccggaagcagtggtatatgaggcttctatctgc |
260503 |
T |
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| Q |
101 |
aagtacattttcattatgaatagcttatgcaagtcttacgacaataagattcccaatctgacttgcattatatagaaaatagaaagtacattccaaatga |
200 |
Q |
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| T |
260504 |
aagtacattttcattatgaatagcttatgcaagtcttacgacaataagattcccaatctgacttgcattatatagaaaatagaaagtacattccaaatga |
260603 |
T |
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| Q |
201 |
aaaatagtaacccagtatattctatgcatctttacctt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
260604 |
aaaatagtaacccagtatattctatgcatctttacctt |
260641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 38111386 - 38111147
Alignment:
| Q |
1 |
caaaaatagaatgcttttaagggatacataccatccagaggttaaaagaaggcttctttttggttccccggaagcagtggtatatgaggcttctatctgc |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
38111386 |
caaaaatagaatgtttttaagggatacataccatccagaggttaaaagaaggcttctttttgtttccccggaagaagtggtatatgaggcttctatctgc |
38111287 |
T |
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| Q |
101 |
aagtacattttcattatgaatagcttatgcaagtcttacgacaataagattcccaatctgacttgcattatatagaaaatagaaagtacattccaaatga |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38111286 |
aagtacattttcattatgaataccttatgcaagtctcacgacaataagattcccaatctgacttgcattatatagaaaatagaaagtacatttcaaatga |
38111187 |
T |
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| Q |
201 |
aaaatagtaacccagtatattctatgcatctttacctttg |
240 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||| |
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| T |
38111186 |
aaaatagtaacccagtatattctacgcatctttatctttg |
38111147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 38121015 - 38120776
Alignment:
| Q |
1 |
caaaaatagaatgcttttaagggatacataccatccagaggttaaaagaaggcttctttttggttccccggaagcagtggtatatgaggcttctatctgc |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
38121015 |
caaaaatagaatgtttttaagggatacataccatccagaggttaaaagaaggcttctttttgtttccccggaagaagtggtatatgaggcttctatctgc |
38120916 |
T |
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| Q |
101 |
aagtacattttcattatgaatagcttatgcaagtcttacgacaataagattcccaatctgacttgcattatatagaaaatagaaagtacattccaaatga |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38120915 |
aagtacattttcattatgaataccttatgcaagtctcacgacaataagattcccaatctgacttgcattatatagaaaatagaaagtacatttcaaatga |
38120816 |
T |
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| Q |
201 |
aaaatagtaacccagtatattctatgcatctttacctttg |
240 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||| |
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| T |
38120815 |
aaaatagtaacccagtatattctacgcatctttatctttg |
38120776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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